RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 HSP90AB3PQ58FF7 597 aa19.18■□□□□ 0.66
TRIM28-209ENST00000597423 ATP10DQ9P241 1426 aa19.17■□□□□ 0.66
TRIM28-209ENST00000597423 ERVV-1B6SEH8 477 aa19.17■□□□□ 0.66
TRIM28-209ENST00000597423 SF3B2Q13435 895 aaKnown RBP19.17■□□□□ 0.66
TRIM28-209ENST00000597423 LINC00116Q8NCU8 138 aa19.17■□□□□ 0.66
TRIM28-209ENST00000597423 RPS6KA4O75676 772 aa19.16■□□□□ 0.66
TRIM28-209ENST00000597423 TTLL7Q6ZT98 887 aa19.16■□□□□ 0.66
TRIM28-209ENST00000597423 RWDD1Q9H446 243 aaPredicted RBP19.16■□□□□ 0.66
TRIM28-209ENST00000597423 ZNF831Q5JPB2 1677 aa19.16■□□□□ 0.66
TRIM28-209ENST00000597423 MAP3K15Q6ZN16 1313 aa19.16■□□□□ 0.66
TRIM28-209ENST00000597423 BTAF1O14981 1849 aa19.16■□□□□ 0.66
TRIM28-209ENST00000597423 DZIP3Q86Y13 1208 aaKnown RBP19.15■□□□□ 0.66
TRIM28-209ENST00000597423 MYD88Q99836 296 aa19.15■□□□□ 0.66
TRIM28-209ENST00000597423 C9orf78Q9NZ63 289 aaPredicted RBP19.15■□□□□ 0.66
TRIM28-209ENST00000597423 RTCBQ9Y3I0 505 aaKnown RBP19.15■□□□□ 0.66
TRIM28-209ENST00000597423 SBF2Q86WG5 1849 aa19.14■□□□□ 0.65
TRIM28-209ENST00000597423 GNAI2P04899 355 aa19.14■□□□□ 0.65
TRIM28-209ENST00000597423 TXNRD1Q16881 649 aa19.14■□□□□ 0.65
TRIM28-209ENST00000597423 B4GALNT3Q6L9W6 998 aa19.14■□□□□ 0.65
TRIM28-209ENST00000597423 AK7Q96M32 723 aa19.14■□□□□ 0.65
TRIM28-209ENST00000597423 ZBTB3Q9H5J0 574 aa19.14■□□□□ 0.65
TRIM28-209ENST00000597423 IBTKQ9P2D0 1353 aaPredicted RBP19.14■□□□□ 0.65
TRIM28-209ENST00000597423 RGL2O15211 777 aa19.13■□□□□ 0.65
TRIM28-209ENST00000597423 UBTFL1P0CB47 393 aaPredicted RBP19.13■□□□□ 0.65
TRIM28-209ENST00000597423 KCNQ4P56696 695 aa19.13■□□□□ 0.65
TRIM28-209ENST00000597423 TCIRG1Q13488 830 aa19.13■□□□□ 0.65
TRIM28-209ENST00000597423 ZNF652Q9Y2D9 606 aa19.13■□□□□ 0.65
TRIM28-209ENST00000597423 CICQ96RK0 1608 aaPredicted RBP19.12■□□□□ 0.65
TRIM28-209ENST00000597423 TRIM28Q13263 835 aaKnown RBP19.12■□□□□ 0.65
TRIM28-209ENST00000597423 GIGYF2Q6Y7W6 1299 aaKnown RBP19.12■□□□□ 0.65
TRIM28-209ENST00000597423 CCDC125Q86Z20 511 aa19.12■□□□□ 0.65
TRIM28-209ENST00000597423 RPAP2Q8IXW5 612 aaPredicted RBP19.12■□□□□ 0.65
TRIM28-209ENST00000597423 CCDC191Q8NCU4 936 aa19.12■□□□□ 0.65
TRIM28-209ENST00000597423 USP44Q9H0E7 712 aa19.12■□□□□ 0.65
TRIM28-209ENST00000597423 TBC1D2BQ9UPU7 963 aa19.12■□□□□ 0.65
TRIM28-209ENST00000597423 TJP1Q07157 1748 aa19.11■□□□□ 0.65
TRIM28-209ENST00000597423 NEURL1BA8MQ27 555 aa19.11■□□□□ 0.65
TRIM28-209ENST00000597423 GNPATO15228 680 aa19.11■□□□□ 0.65
TRIM28-209ENST00000597423 ADRA2BP18089 450 aa19.11■□□□□ 0.65
TRIM28-209ENST00000597423 GCKRQ14397 625 aa19.11■□□□□ 0.65
TRIM28-209ENST00000597423 TRAPPC3LQ5T215 181 aa19.11■□□□□ 0.65
TRIM28-209ENST00000597423 MEIS3Q99687 375 aa19.11■□□□□ 0.65
TRIM28-209ENST00000597423 CWC25Q9NXE8 425 aaPredicted RBP19.11■□□□□ 0.65
TRIM28-209ENST00000597423 GRM8O00222 908 aa19.1■□□□□ 0.65
TRIM28-209ENST00000597423 IGKV5-2P06315 115 aa19.1■□□□□ 0.65
TRIM28-209ENST00000597423 CLEC4GQ6UXB4 293 aa19.1■□□□□ 0.65
TRIM28-209ENST00000597423 LRRC4BQ9NT99 713 aa19.1■□□□□ 0.65
TRIM28-209ENST00000597423 PCDHB15Q9Y5E8 787 aa19.1■□□□□ 0.65
TRIM28-209ENST00000597423 ZPR1O75312 459 aa19.09■□□□□ 0.65
TRIM28-209ENST00000597423 HMMRO75330 724 aa19.09■□□□□ 0.65
TRIM28-209ENST00000597423 CWF19L2Q2TBE0 894 aaKnown RBP19.09■□□□□ 0.65
TRIM28-209ENST00000597423 CENPQQ7L2Z9 268 aaPredicted RBP19.09■□□□□ 0.65
TRIM28-209ENST00000597423 COL15A1P39059 1388 aa19.08■□□□□ 0.65
TRIM28-209ENST00000597423 ATP5J2-PTCD1G3V325 749 aa19.08■□□□□ 0.64
TRIM28-209ENST00000597423 BAG6P46379 1132 aa19.08■□□□□ 0.64
TRIM28-209ENST00000597423 HDAC1Q13547 482 aaPredicted RBP19.08■□□□□ 0.64
TRIM28-209ENST00000597423 ISCA1Q9BUE6 129 aa19.08■□□□□ 0.64
TRIM28-209ENST00000597423 RFC4P35249 363 aa19.07■□□□□ 0.64
TRIM28-209ENST00000597423 PROM2Q8N271 834 aa19.07■□□□□ 0.64
TRIM28-209ENST00000597423 NARFQ9UHQ1 456 aa19.07■□□□□ 0.64
TRIM28-209ENST00000597423 UTYO14607 1347 aa19.06■□□□□ 0.64
TRIM28-209ENST00000597423 LY75O60449 1722 aa19.06■□□□□ 0.64
TRIM28-209ENST00000597423 HLFQ16534 295 aa19.06■□□□□ 0.64
TRIM28-209ENST00000597423 ANKRD44Q8N8A2 993 aa19.06■□□□□ 0.64
TRIM28-209ENST00000597423 FLAD1Q8NFF5 587 aa19.06■□□□□ 0.64
TRIM28-209ENST00000597423 CAMTA2O94983 1202 aa19.05■□□□□ 0.64
TRIM28-209ENST00000597423 NBPF7P0C2Y1 421 aaPredicted RBP19.05■□□□□ 0.64
TRIM28-209ENST00000597423 SSFA2P28290 1259 aa19.05■□□□□ 0.64
TRIM28-209ENST00000597423 PARP10Q53GL7 1025 aa19.05■□□□□ 0.64
TRIM28-209ENST00000597423 C1orf115Q9H7X2 142 aa19.05■□□□□ 0.64
TRIM28-209ENST00000597423 H7C1W4 665 aa19.04■□□□□ 0.64
TRIM28-209ENST00000597423 HSP90B1P14625 803 aaKnown RBP19.04■□□□□ 0.64
TRIM28-209ENST00000597423 ATP8B2P98198 1209 aa19.04■□□□□ 0.64
TRIM28-209ENST00000597423 ARHGEF1Q92888 912 aaKnown RBP19.04■□□□□ 0.64
TRIM28-209ENST00000597423 LRRFIP2Q9Y608 721 aaKnown RBP19.04■□□□□ 0.64
TRIM28-209ENST00000597423 CEP85Q6P2H3 762 aa19.03■□□□□ 0.64
TRIM28-209ENST00000597423 PPP1R42Q7Z4L9 355 aa19.03■□□□□ 0.64
TRIM28-209ENST00000597423 ZNF34Q8IZ26 560 aa19.03■□□□□ 0.64
TRIM28-209ENST00000597423 CAMKK2Q96RR4 588 aa19.03■□□□□ 0.64
TRIM28-209ENST00000597423 TFCP2L1Q9NZI6 479 aa19.03■□□□□ 0.64
TRIM28-209ENST00000597423 RREB1Q92766 1687 aa19.03■□□□□ 0.64
TRIM28-209ENST00000597423 IGHDP01880 384 aa19.02■□□□□ 0.64
TRIM28-209ENST00000597423 NLRP10Q86W26 655 aa19.02■□□□□ 0.64
TRIM28-209ENST00000597423 PELP1Q8IZL8 1130 aaKnown RBP19.02■□□□□ 0.64
TRIM28-209ENST00000597423 ZBTB38Q8NAP3 1195 aaPredicted RBP19.02■□□□□ 0.64
TRIM28-209ENST00000597423 GCC1Q96CN9 775 aa19.02■□□□□ 0.64
TRIM28-209ENST00000597423 COL5A3P25940 1745 aaPredicted RBP19.02■□□□□ 0.63
TRIM28-209ENST00000597423 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP19.01■□□□□ 0.63
TRIM28-209ENST00000597423 PHF14O94880 888 aa19.01■□□□□ 0.63
TRIM28-209ENST00000597423 PCCAP05165 728 aaPredicted RBP19.01■□□□□ 0.63
TRIM28-209ENST00000597423 GPTP24298 496 aa19.01■□□□□ 0.63
TRIM28-209ENST00000597423 EN1Q05925 392 aaPredicted RBP19.01■□□□□ 0.63
TRIM28-209ENST00000597423 UBE3BQ7Z3V4 1068 aa19.01■□□□□ 0.63
TRIM28-209ENST00000597423 NIP7Q9Y221 180 aaKnown RBP eCLIP19.01■□□□□ 0.63
TRIM28-209ENST00000597423 USPL1Q5W0Q7 1092 aa19■□□□□ 0.63
TRIM28-209ENST00000597423 UTP14AQ9BVJ6 771 aaKnown RBP19■□□□□ 0.63
TRIM28-209ENST00000597423 ZBTB47Q9UFB7 747 aaPredicted RBP19■□□□□ 0.63
TRIM28-209ENST00000597423 TRMT112Q9UI30 125 aaKnown RBP19■□□□□ 0.63
TRIM28-209ENST00000597423 KDM2BQ8NHM5 1336 aa19■□□□□ 0.63
TRIM28-209ENST00000597423 EZH2Q15910 746 aaKnown RBP18.99■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 83.3 ms