RNA–Protein interactions for RNA: ENST00000589318.5

DDX39A-209, Transcript of DExD-box helicase 39A, human

TSL 1 (best)

Gene DDX39A, Length 1,903 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX39A-209	ENST00000589318	VSIG10	Q8N0Z9	540 aa		19.13	■□□□□ 0.65
DDX39A-209	ENST00000589318	A1BG	P04217	495 aa		19.13	■□□□□ 0.65
DDX39A-209	ENST00000589318	IGKV5-2	P06315	115 aa		19.13	■□□□□ 0.65
DDX39A-209	ENST00000589318	PRIM1	P49642	420 aa	Known RBP	19.13	■□□□□ 0.65
DDX39A-209	ENST00000589318	PKNOX2	Q96KN3	472 aa		19.13	■□□□□ 0.65
DDX39A-209	ENST00000589318	HMMR	O75330	724 aa		19.12	■□□□□ 0.65
DDX39A-209	ENST00000589318	FAM98C	Q17RN3	349 aa	Known RBP	19.12	■□□□□ 0.65
DDX39A-209	ENST00000589318	ANKRD13D	Q6ZTN6	518 aa		19.12	■□□□□ 0.65
DDX39A-209	ENST00000589318	RIC3	Q7Z5B4	369 aa		19.12	■□□□□ 0.65
DDX39A-209	ENST00000589318	TJP1	Q07157	1748 aa		19.12	■□□□□ 0.65
DDX39A-209	ENST00000589318	AFDN	P55196	1824 aa	Known RBP	19.12	■□□□□ 0.65
DDX39A-209	ENST00000589318	SLC4A9	Q96Q91	983 aa		19.12	■□□□□ 0.65
DDX39A-209	ENST00000589318	METTL22	Q9BUU2	404 aa	Predicted RBP	19.12	■□□□□ 0.65
DDX39A-209	ENST00000589318	THSD7A	Q9UPZ6	1657 aa		19.11	■□□□□ 0.65
DDX39A-209	ENST00000589318	UTY	O14607	1347 aa		19.11	■□□□□ 0.65
DDX39A-209	ENST00000589318	DNAJC10	Q8IXB1	793 aa		19.1	■□□□□ 0.65
DDX39A-209	ENST00000589318	SYTL4	Q96C24	671 aa	Predicted RBP	19.1	■□□□□ 0.65
DDX39A-209	ENST00000589318	USP21	Q9UK80	565 aa		19.1	■□□□□ 0.65
DDX39A-209	ENST00000589318	NEURL1B	A8MQ27	555 aa		19.09	■□□□□ 0.65
DDX39A-209	ENST00000589318	PLBD2	Q8NHP8	589 aa		19.09	■□□□□ 0.65
DDX39A-209	ENST00000589318	SSH3	Q8TE77	659 aa		19.09	■□□□□ 0.65
DDX39A-209	ENST00000589318	POLA2	Q14181	598 aa		19.08	■□□□□ 0.65
DDX39A-209	ENST00000589318	RBM42	Q9BTD8	480 aa	Known RBP	19.08	■□□□□ 0.65
DDX39A-209	ENST00000589318	TEX13A	Q9BXU3	409 aa	Predicted RBP	19.08	■□□□□ 0.65
DDX39A-209	ENST00000589318	GRM8	O00222	908 aa		19.08	■□□□□ 0.64
DDX39A-209	ENST00000589318	TTLL7	Q6ZT98	887 aa		19.08	■□□□□ 0.64
DDX39A-209	ENST00000589318	MYD88	Q99836	296 aa		19.08	■□□□□ 0.64
DDX39A-209	ENST00000589318	PPP1R42	Q7Z4L9	355 aa		19.07	■□□□□ 0.64
DDX39A-209	ENST00000589318	ACSBG1	Q96GR2	724 aa		19.07	■□□□□ 0.64
DDX39A-209	ENST00000589318	C9orf78	Q9NZ63	289 aa	Predicted RBP	19.07	■□□□□ 0.64
DDX39A-209	ENST00000589318	CIC	Q96RK0	1608 aa	Predicted RBP	19.07	■□□□□ 0.64
DDX39A-209	ENST00000589318	NEXN	Q0ZGT2	675 aa		19.06	■□□□□ 0.64
DDX39A-209	ENST00000589318	MTX1	Q13505	466 aa		19.06	■□□□□ 0.64
DDX39A-209	ENST00000589318	KAZALD1	Q96I82	304 aa		19.06	■□□□□ 0.64
DDX39A-209	ENST00000589318	GCKR	Q14397	625 aa		19.06	■□□□□ 0.64
DDX39A-209	ENST00000589318	EXOC6B	Q9Y2D4	811 aa		19.06	■□□□□ 0.64
DDX39A-209	ENST00000589318	SMARCA5	O60264	1052 aa	Predicted RBP	19.05	■□□□□ 0.64
DDX39A-209	ENST00000589318	CYP19A1	P11511	503 aa	Predicted RBP	19.05	■□□□□ 0.64
DDX39A-209	ENST00000589318	PLEKHM2	Q8IWE5	1019 aa		19.04	■□□□□ 0.64
DDX39A-209	ENST00000589318	C16orf71	Q8IYS4	520 aa	Predicted RBP	19.04	■□□□□ 0.64
DDX39A-209	ENST00000589318	SUCLG2	Q96I99	432 aa		19.04	■□□□□ 0.64
DDX39A-209	ENST00000589318	AFF2	P51816	1311 aa		19.04	■□□□□ 0.64
DDX39A-209	ENST00000589318	STARD3NL	O95772	234 aa		19.04	■□□□□ 0.64
DDX39A-209	ENST00000589318	APBB1	O00213	710 aa		19.03	■□□□□ 0.64
DDX39A-209	ENST00000589318	SRGAP3	O43295	1099 aa		19.03	■□□□□ 0.64
DDX39A-209	ENST00000589318	ATRN	O75882	1429 aa		19.03	■□□□□ 0.64
DDX39A-209	ENST00000589318	MEX3C	Q5U5Q3	659 aa	Known RBP	19.03	■□□□□ 0.64
DDX39A-209	ENST00000589318	OTUD7A	Q8TE49	926 aa	Predicted RBP	19.03	■□□□□ 0.64
DDX39A-209	ENST00000589318	KCNQ2	O43526	872 aa		19.02	■□□□□ 0.64
DDX39A-209	ENST00000589318	SEC24B	O95487	1268 aa		19.02	■□□□□ 0.64
DDX39A-209	ENST00000589318	L1TD1	Q5T7N2	865 aa	Known RBP	19.02	■□□□□ 0.64
DDX39A-209	ENST00000589318	RREB1	Q92766	1687 aa		19.02	■□□□□ 0.63
DDX39A-209	ENST00000589318	ATP5J2-PTCD1	G3V325	749 aa		19.02	■□□□□ 0.63
DDX39A-209	ENST00000589318	BMP2KL	Q5H9B9	411 aa		19.02	■□□□□ 0.63
DDX39A-209	ENST00000589318	GJD4	Q96KN9	370 aa	Predicted RBP	19.01	■□□□□ 0.63
DDX39A-209	ENST00000589318	HDAC5	Q9UQL6	1122 aa		19.01	■□□□□ 0.63
DDX39A-209	ENST00000589318	ZBTB3	Q9H5J0	574 aa		19	■□□□□ 0.63
DDX39A-209	ENST00000589318	BICC1	Q9H694	974 aa	Known RBP	19	■□□□□ 0.63
DDX39A-209	ENST00000589318	COL15A1	P39059	1388 aa		19	■□□□□ 0.63
DDX39A-209	ENST00000589318	ZNF831	Q5JPB2	1677 aa		19	■□□□□ 0.63
DDX39A-209	ENST00000589318	CASP7	P55210	303 aa		19	■□□□□ 0.63
DDX39A-209	ENST00000589318	LRRCC1	Q9C099	1032 aa		19	■□□□□ 0.63
DDX39A-209	ENST00000589318	ZBTB1	Q9Y2K1	713 aa		19	■□□□□ 0.63
DDX39A-209	ENST00000589318	SALL3	Q9BXA9	1300 aa		18.99	■□□□□ 0.63
DDX39A-209	ENST00000589318	MYH14	Q7Z406	1995 aa	Known RBP	18.99	■□□□□ 0.63
DDX39A-209	ENST00000589318	COL5A3	P25940	1745 aa	Predicted RBP	18.98	■□□□□ 0.63
DDX39A-209	ENST00000589318	PALLD	Q8WX93	1383 aa		18.98	■□□□□ 0.63
DDX39A-209	ENST00000589318		A0A0G2JS52	829 aa		18.98	■□□□□ 0.63
DDX39A-209	ENST00000589318	GSPT1	P15170	499 aa	Known RBP	18.98	■□□□□ 0.63
DDX39A-209	ENST00000589318	EPHA10	Q5JZY3	1008 aa		18.98	■□□□□ 0.63
DDX39A-209	ENST00000589318	NHS	Q6T4R5	1651 aa		18.98	■□□□□ 0.63
DDX39A-209	ENST00000589318	TUBGCP6	Q96RT7	1819 aa		18.98	■□□□□ 0.63
DDX39A-209	ENST00000589318	LOC102724428	A0A0B4J2F2	783 aa		18.98	■□□□□ 0.63
DDX39A-209	ENST00000589318	ONECUT3	O60422	494 aa	Predicted RBP	18.98	■□□□□ 0.63
DDX39A-209	ENST00000589318	SIK1	P57059	783 aa		18.98	■□□□□ 0.63
DDX39A-209	ENST00000589318	SURF6	O75683	361 aa	Known RBP	18.97	■□□□□ 0.63
DDX39A-209	ENST00000589318	JARID2	Q92833	1246 aa	Predicted RBP	18.97	■□□□□ 0.63
DDX39A-209	ENST00000589318	BTAF1	O14981	1849 aa		18.97	■□□□□ 0.63
DDX39A-209	ENST00000589318	ANKRD36C	Q5JPF3	1778 aa		18.96	■□□□□ 0.63
DDX39A-209	ENST00000589318		A0A087WZG4	1122 aa		18.96	■□□□□ 0.63
DDX39A-209	ENST00000589318	RAB11FIP3	O75154	756 aa		18.96	■□□□□ 0.63
DDX39A-209	ENST00000589318	UBE3B	Q7Z3V4	1068 aa		18.96	■□□□□ 0.63
DDX39A-209	ENST00000589318	ISCA1	Q9BUE6	129 aa		18.96	■□□□□ 0.63
DDX39A-209	ENST00000589318	ZNF330	Q9Y3S2	320 aa	Predicted RBP	18.96	■□□□□ 0.63
DDX39A-209	ENST00000589318	SBF2	Q86WG5	1849 aa		18.96	■□□□□ 0.63
DDX39A-209	ENST00000589318	NUP98	P52948	1817 aa		18.96	■□□□□ 0.63
DDX39A-209	ENST00000589318		H7C1W4	665 aa		18.96	■□□□□ 0.63
DDX39A-209	ENST00000589318	ITPK1	Q13572	414 aa		18.96	■□□□□ 0.63
DDX39A-209	ENST00000589318	TTC22	Q5TAA0	569 aa		18.96	■□□□□ 0.63
DDX39A-209	ENST00000589318	PTF1A	Q7RTS3	328 aa		18.96	■□□□□ 0.63
DDX39A-209	ENST00000589318	OSBPL3	Q9H4L5	887 aa		18.96	■□□□□ 0.63
DDX39A-209	ENST00000589318	TRPC5	Q9UL62	973 aa	Predicted RBP	18.96	■□□□□ 0.63
DDX39A-209	ENST00000589318	MAP3K15	Q6ZN16	1313 aa		18.95	■□□□□ 0.62
DDX39A-209	ENST00000589318	TCIRG1	Q13488	830 aa		18.95	■□□□□ 0.62
DDX39A-209	ENST00000589318	RABL6	Q3YEC7	729 aa	Predicted RBP	18.95	■□□□□ 0.62
DDX39A-209	ENST00000589318	INTS5	Q6P9B9	1019 aa	Known RBP	18.95	■□□□□ 0.62
DDX39A-209	ENST00000589318	CCDC191	Q8NCU4	936 aa		18.95	■□□□□ 0.62
DDX39A-209	ENST00000589318	SMARCC1	Q92922	1105 aa	Predicted RBP	18.95	■□□□□ 0.62
DDX39A-209	ENST00000589318	CWC25	Q9NXE8	425 aa	Predicted RBP	18.95	■□□□□ 0.62
DDX39A-209	ENST00000589318	ATP6V1A	P38606	617 aa		18.94	■□□□□ 0.62

Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms