RNA–Protein interactions for RNA: ENST00000587339.2

TRIM47-204, Transcript of tripartite motif containing 47, humanhuman

TSL 1 (best)

Gene TRIM47, Length 1,907 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM47-204ENST00000587339 SSH3Q8TE77 659 aa24.67■■□□□ 1.54
TRIM47-204ENST00000587339 UTYO14607 1347 aa24.67■■□□□ 1.54
TRIM47-204ENST00000587339 EXOC6BQ9Y2D4 811 aa24.66■■□□□ 1.54
TRIM47-204ENST00000587339 GCKRQ14397 625 aa24.65■■□□□ 1.54
TRIM47-204ENST00000587339 TTLL7Q6ZT98 887 aa24.65■■□□□ 1.54
TRIM47-204ENST00000587339 SRGAP3O43295 1099 aa24.65■■□□□ 1.54
TRIM47-204ENST00000587339 SLC4A9Q96Q91 983 aa24.65■■□□□ 1.54
TRIM47-204ENST00000587339 ARFGEF2Q9Y6D5 1785 aa24.64■■□□□ 1.54
TRIM47-204ENST00000587339 BCL11AQ9H165 835 aa24.64■■□□□ 1.53
TRIM47-204ENST00000587339 POLA2Q14181 598 aa24.63■■□□□ 1.53
TRIM47-204ENST00000587339 MTX1Q13505 466 aa24.63■■□□□ 1.53
TRIM47-204ENST00000587339 AFF2P51816 1311 aa24.62■■□□□ 1.53
TRIM47-204ENST00000587339 SMARCA5O60264 1052 aaPredicted RBP24.62■■□□□ 1.53
TRIM47-204ENST00000587339 ZNF330Q9Y3S2 320 aaPredicted RBP24.62■■□□□ 1.53
TRIM47-204ENST00000587339 CYP19A1P11511 503 aaPredicted RBP24.61■■□□□ 1.53
TRIM47-204ENST00000587339 ANP32AP39687 249 aaKnown RBP24.61■■□□□ 1.53
TRIM47-204ENST00000587339 ATP5J2-PTCD1G3V325 749 aa24.61■■□□□ 1.53
TRIM47-204ENST00000587339 BMP2KLQ5H9B9 411 aa24.61■■□□□ 1.53
TRIM47-204ENST00000587339 C16orf71Q8IYS4 520 aaPredicted RBP24.61■■□□□ 1.53
TRIM47-204ENST00000587339 LRRCC1Q9C099 1032 aa24.61■■□□□ 1.53
TRIM47-204ENST00000587339 ZBTB3Q9H5J0 574 aa24.61■■□□□ 1.53
TRIM47-204ENST00000587339 NPM2Q86SE8 214 aaKnown RBP24.6■■□□□ 1.53
TRIM47-204ENST00000587339 PLEKHM2Q8IWE5 1019 aa24.6■■□□□ 1.53
TRIM47-204ENST00000587339 SUCLG2Q96I99 432 aa24.6■■□□□ 1.53
TRIM47-204ENST00000587339 GJD4Q96KN9 370 aaPredicted RBP24.6■■□□□ 1.53
TRIM47-204ENST00000587339 KCNQ2O43526 872 aa24.58■■□□□ 1.53
TRIM47-204ENST00000587339 SURF6O75683 361 aaKnown RBP24.58■■□□□ 1.53
TRIM47-204ENST00000587339 KAZALD1Q96I82 304 aa24.58■■□□□ 1.53
TRIM47-204ENST00000587339 BICC1Q9H694 974 aaKnown RBP24.57■■□□□ 1.52
TRIM47-204ENST00000587339 NUP188Q5SRE5 1749 aa24.57■■□□□ 1.52
TRIM47-204ENST00000587339 A0A087WZG4 1122 aa24.57■■□□□ 1.52
TRIM47-204ENST00000587339 RAB11FIP3O75154 756 aa24.57■■□□□ 1.52
TRIM47-204ENST00000587339 KIF6Q6ZMV9 814 aa24.57■■□□□ 1.52
TRIM47-204ENST00000587339 THSD7AQ9UPZ6 1657 aa24.56■■□□□ 1.52
TRIM47-204ENST00000587339 AFDNP55196 1824 aaKnown RBP24.56■■□□□ 1.52
TRIM47-204ENST00000587339 PALLDQ8WX93 1383 aa24.55■■□□□ 1.52
TRIM47-204ENST00000587339 LOC102724428A0A0B4J2F2 783 aa24.55■■□□□ 1.52
TRIM47-204ENST00000587339 ATP6V1AP38606 617 aa24.55■■□□□ 1.52
TRIM47-204ENST00000587339 SIK1P57059 783 aa24.55■■□□□ 1.52
TRIM47-204ENST00000587339 UBE3BQ7Z3V4 1068 aa24.55■■□□□ 1.52
TRIM47-204ENST00000587339 OTUD7AQ8TE49 926 aaPredicted RBP24.55■■□□□ 1.52
TRIM47-204ENST00000587339 SMARCC1Q92922 1105 aaPredicted RBP24.55■■□□□ 1.52
TRIM47-204ENST00000587339 TRPC5Q9UL62 973 aaPredicted RBP24.55■■□□□ 1.52
TRIM47-204ENST00000587339 TJP1Q07157 1748 aa24.55■■□□□ 1.52
TRIM47-204ENST00000587339 HSP90AB4PQ58FF6 505 aa24.55■■□□□ 1.52
TRIM47-204ENST00000587339 ZBTB1Q9Y2K1 713 aa24.55■■□□□ 1.52
TRIM47-204ENST00000587339 SEC24BO95487 1268 aa24.54■■□□□ 1.52
TRIM47-204ENST00000587339 ARXQ96QS3 562 aa24.54■■□□□ 1.52
TRIM47-204ENST00000587339 CWC25Q9NXE8 425 aaPredicted RBP24.54■■□□□ 1.52
TRIM47-204ENST00000587339 CCDC191Q8NCU4 936 aa24.53■■□□□ 1.52
TRIM47-204ENST00000587339 ATRNO75882 1429 aa24.53■■□□□ 1.52
TRIM47-204ENST00000587339 NOP58Q9Y2X3 529 aaKnown RBP24.53■■□□□ 1.52
TRIM47-204ENST00000587339 IL6STP40189 918 aaPredicted RBP24.52■■□□□ 1.52
TRIM47-204ENST00000587339 JARID2Q92833 1246 aaPredicted RBP24.52■■□□□ 1.52
TRIM47-204ENST00000587339 TCIRG1Q13488 830 aa24.51■■□□□ 1.51
TRIM47-204ENST00000587339 TTC22Q5TAA0 569 aa24.51■■□□□ 1.51
TRIM47-204ENST00000587339 KIF1BPQ96EK5 621 aa24.51■■□□□ 1.51
TRIM47-204ENST00000587339 MAP3K15Q6ZN16 1313 aa24.51■■□□□ 1.51
TRIM47-204ENST00000587339 COL15A1P39059 1388 aa24.51■■□□□ 1.51
TRIM47-204ENST00000587339 RHPN1Q8TCX5 695 aa24.51■■□□□ 1.51
TRIM47-204ENST00000587339 H7C1W4 665 aa24.5■■□□□ 1.51
TRIM47-204ENST00000587339 ONECUT3O60422 494 aaPredicted RBP24.5■■□□□ 1.51
TRIM47-204ENST00000587339 GSPT1P15170 499 aaKnown RBP24.5■■□□□ 1.51
TRIM47-204ENST00000587339 EPHA10Q5JZY3 1008 aa24.5■■□□□ 1.51
TRIM47-204ENST00000587339 UPF2Q9HAU5 1272 aaKnown RBP24.5■■□□□ 1.51
TRIM47-204ENST00000587339 CASP7P55210 303 aa24.49■■□□□ 1.51
TRIM47-204ENST00000587339 OS9Q13438 667 aaPredicted RBP24.49■■□□□ 1.51
TRIM47-204ENST00000587339 ISCA1Q9BUE6 129 aa24.49■■□□□ 1.51
TRIM47-204ENST00000587339 OSBPL3Q9H4L5 887 aa24.49■■□□□ 1.51
TRIM47-204ENST00000587339 IL1RAPL2Q9NP60 686 aa24.49■■□□□ 1.51
TRIM47-204ENST00000587339 PDE1AP54750 535 aa24.49■■□□□ 1.51
TRIM47-204ENST00000587339 CCDC87Q9NVE4 849 aa24.49■■□□□ 1.51
TRIM47-204ENST00000587339 CRKLP46109 303 aaKnown RBP24.48■■□□□ 1.51
TRIM47-204ENST00000587339 ITPK1Q13572 414 aa24.48■■□□□ 1.51
TRIM47-204ENST00000587339 GIGYF2Q6Y7W6 1299 aaKnown RBP24.48■■□□□ 1.51
TRIM47-204ENST00000587339 SALL3Q9BXA9 1300 aa24.47■■□□□ 1.51
TRIM47-204ENST00000587339 TRIM28Q13263 835 aaKnown RBP24.47■■□□□ 1.51
TRIM47-204ENST00000587339 INTS5Q6P9B9 1019 aaKnown RBP24.47■■□□□ 1.51
TRIM47-204ENST00000587339 QTRT2Q9H974 415 aaKnown RBP24.47■■□□□ 1.51
TRIM47-204ENST00000587339 PA2G4Q9UQ80 394 aaKnown RBP24.47■■□□□ 1.51
TRIM47-204ENST00000587339 MX1P20591 662 aa24.47■■□□□ 1.51
TRIM47-204ENST00000587339 RABL6Q3YEC7 729 aaPredicted RBP24.47■■□□□ 1.51
TRIM47-204ENST00000587339 CICQ96RK0 1608 aaPredicted RBP24.47■■□□□ 1.51
TRIM47-204ENST00000587339 RTL5Q5HYW3 569 aaPredicted RBP24.46■■□□□ 1.51
TRIM47-204ENST00000587339 FAM182BQ5T319 152 aa24.46■■□□□ 1.51
TRIM47-204ENST00000587339 DZIP3Q86Y13 1208 aaKnown RBP24.46■■□□□ 1.51
TRIM47-204ENST00000587339 ERC1Q8IUD2 1116 aa24.46■■□□□ 1.51
TRIM47-204ENST00000587339 HSP90AB3PQ58FF7 597 aa24.45■■□□□ 1.51
TRIM47-204ENST00000587339 SEPT12Q8IYM1 358 aa24.45■■□□□ 1.51
TRIM47-204ENST00000587339 EIF5P55010 431 aaKnown RBP24.45■■□□□ 1.5
TRIM47-204ENST00000587339 IPO9Q96P70 1041 aaKnown RBP24.45■■□□□ 1.5
TRIM47-204ENST00000587339 ERVV-1B6SEH8 477 aa24.44■■□□□ 1.5
TRIM47-204ENST00000587339 HLFQ16534 295 aa24.44■■□□□ 1.5
TRIM47-204ENST00000587339 TBC1D2BQ9UPU7 963 aa24.44■■□□□ 1.5
TRIM47-204ENST00000587339 G3BP1Q13283 466 aaKnown RBP eCLIP24.43■■□□□ 1.52e-8■■■■■ 28.9
TRIM47-204ENST00000587339 PTF1AQ7RTS3 328 aa24.43■■□□□ 1.5
TRIM47-204ENST00000587339 STAP2Q9UGK3 403 aa24.43■■□□□ 1.5
TRIM47-204ENST00000587339 CDC45O75419 566 aa24.42■■□□□ 1.5
TRIM47-204ENST00000587339 FOXO4P98177 505 aa24.42■■□□□ 1.5
TRIM47-204ENST00000587339 LMBR1LQ6UX01 489 aa24.42■■□□□ 1.5
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms