RNA–Protein interactions for RNA: ENST00000580287.5

CDK5RAP3-217, Transcript of CDK5 regulatory subunit associated protein 3, humanhuman

TSL 1 (best)

Gene CDK5RAP3, Length 2,609 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5RAP3-217ENST00000580287 MYD88Q99836 296 aa15.83■□□□□ 0.13
CDK5RAP3-217ENST00000580287 ITGB4P16144 1822 aa15.83■□□□□ 0.13
CDK5RAP3-217ENST00000580287 ATP6V1AP38606 617 aa15.83■□□□□ 0.12
CDK5RAP3-217ENST00000580287 CEP85Q6P2H3 762 aa15.83■□□□□ 0.12
CDK5RAP3-217ENST00000580287 LRRFIP2Q9Y608 721 aaKnown RBP15.83■□□□□ 0.12
CDK5RAP3-217ENST00000580287 DOT1LQ8TEK3 1739 aa15.83■□□□□ 0.12
CDK5RAP3-217ENST00000580287 ONECUT3O60422 494 aaPredicted RBP15.82■□□□□ 0.12
CDK5RAP3-217ENST00000580287 DDX58O95786 925 aaKnown RBP15.82■□□□□ 0.12
CDK5RAP3-217ENST00000580287 ZBTB1Q9Y2K1 713 aa15.82■□□□□ 0.12
CDK5RAP3-217ENST00000580287 LOC102724428A0A0B4J2F2 783 aa15.82■□□□□ 0.12
CDK5RAP3-217ENST00000580287 APBB1O00213 710 aa15.82■□□□□ 0.12
CDK5RAP3-217ENST00000580287 CYP19A1P11511 503 aaPredicted RBP15.82■□□□□ 0.12
CDK5RAP3-217ENST00000580287 SIK1P57059 783 aa15.82■□□□□ 0.12
CDK5RAP3-217ENST00000580287 ITPK1Q13572 414 aa15.82■□□□□ 0.12
CDK5RAP3-217ENST00000580287 SMIM5Q71RC9 77 aa15.82■□□□□ 0.12
CDK5RAP3-217ENST00000580287 STARD3NLO95772 234 aa15.81■□□□□ 0.12
CDK5RAP3-217ENST00000580287 DDRGK1Q96HY6 314 aa15.81■□□□□ 0.12
CDK5RAP3-217ENST00000580287 CHMP4BQ9H444 224 aaKnown RBP15.81■□□□□ 0.12
CDK5RAP3-217ENST00000580287 GNAI2P04899 355 aa15.81■□□□□ 0.12
CDK5RAP3-217ENST00000580287 VSIG10Q8N0Z9 540 aa15.81■□□□□ 0.12
CDK5RAP3-217ENST00000580287 PNMA6EA0A0J9YXQ4 647 aa15.81■□□□□ 0.12
CDK5RAP3-217ENST00000580287 UBTFL1P0CB47 393 aaPredicted RBP15.81■□□□□ 0.12
CDK5RAP3-217ENST00000580287 PALLDQ8WX93 1383 aa15.8■□□□□ 0.12
CDK5RAP3-217ENST00000580287 ATP10DQ9P241 1426 aa15.8■□□□□ 0.12
CDK5RAP3-217ENST00000580287 PAPPAQ13219 1627 aa15.8■□□□□ 0.12
CDK5RAP3-217ENST00000580287 ANKRD44Q8N8A2 993 aa15.8■□□□□ 0.12
CDK5RAP3-217ENST00000580287 C9orf78Q9NZ63 289 aaPredicted RBP15.8■□□□□ 0.12
CDK5RAP3-217ENST00000580287 UBR2Q8IWV8 1755 aa15.79■□□□□ 0.12
CDK5RAP3-217ENST00000580287 GNAI3P08754 354 aa15.79■□□□□ 0.12
CDK5RAP3-217ENST00000580287 LINS1Q8NG48 757 aa15.79■□□□□ 0.12
CDK5RAP3-217ENST00000580287 METTL22Q9BUU2 404 aaPredicted RBP15.79■□□□□ 0.12
CDK5RAP3-217ENST00000580287 LNPKQ9C0E8 428 aa15.79■□□□□ 0.12
CDK5RAP3-217ENST00000580287 SMC5Q8IY18 1101 aa15.79■□□□□ 0.12
CDK5RAP3-217ENST00000580287 ANKRD45Q5TZF3 282 aa15.78■□□□□ 0.12
CDK5RAP3-217ENST00000580287 TEX13AQ9BXU3 409 aaPredicted RBP15.78■□□□□ 0.12
CDK5RAP3-217ENST00000580287 TBC1D2BQ9UPU7 963 aa15.78■□□□□ 0.12
CDK5RAP3-217ENST00000580287 NEURL1BA8MQ27 555 aa15.78■□□□□ 0.12
CDK5RAP3-217ENST00000580287 PLBD2Q8NHP8 589 aa15.78■□□□□ 0.12
CDK5RAP3-217ENST00000580287 NEXNQ0ZGT2 675 aa15.77■□□□□ 0.12
CDK5RAP3-217ENST00000580287 ZBTB22O15209 634 aa15.77■□□□□ 0.11
CDK5RAP3-217ENST00000580287 CRKLP46109 303 aaKnown RBP15.77■□□□□ 0.11
CDK5RAP3-217ENST00000580287 RPAP2Q8IXW5 612 aaPredicted RBP15.77■□□□□ 0.11
CDK5RAP3-217ENST00000580287 CACNA1FO60840 1977 aa15.77■□□□□ 0.11
CDK5RAP3-217ENST00000580287 TNKS1BP1Q9C0C2 1729 aaKnown RBP15.76■□□□□ 0.11
CDK5RAP3-217ENST00000580287 HLFQ16534 295 aa15.76■□□□□ 0.11
CDK5RAP3-217ENST00000580287 INTS5Q6P9B9 1019 aaKnown RBP15.76■□□□□ 0.11
CDK5RAP3-217ENST00000580287 ERBB4Q15303 1308 aa15.76■□□□□ 0.11
CDK5RAP3-217ENST00000580287 THSD7AQ9UPZ6 1657 aa15.76■□□□□ 0.11
CDK5RAP3-217ENST00000580287 GCKRQ14397 625 aa15.76■□□□□ 0.11
CDK5RAP3-217ENST00000580287 RGS17Q9UGC6 210 aaPredicted RBP15.76■□□□□ 0.11
CDK5RAP3-217ENST00000580287 EXOC6BQ9Y2D4 811 aa15.76■□□□□ 0.11
CDK5RAP3-217ENST00000580287 GRM8O00222 908 aa15.75■□□□□ 0.11
CDK5RAP3-217ENST00000580287 SMARCA5O60264 1052 aaPredicted RBP15.75■□□□□ 0.11
CDK5RAP3-217ENST00000580287 KAZALD1Q96I82 304 aa15.75■□□□□ 0.11
CDK5RAP3-217ENST00000580287 SUCLG2Q96I99 432 aa15.75■□□□□ 0.11
CDK5RAP3-217ENST00000580287 ALDH1L1O75891 902 aa15.75■□□□□ 0.11
CDK5RAP3-217ENST00000580287 NFKBIBQ15653 356 aa15.75■□□□□ 0.11
CDK5RAP3-217ENST00000580287 KRT27Q7Z3Y8 459 aa15.75■□□□□ 0.11
CDK5RAP3-217ENST00000580287 PPP1R42Q7Z4L9 355 aa15.75■□□□□ 0.11
CDK5RAP3-217ENST00000580287 PXDNLA1KZ92 1463 aa15.74■□□□□ 0.11
CDK5RAP3-217ENST00000580287 ZNF772Q68DY9 489 aaPredicted RBP15.74■□□□□ 0.11
CDK5RAP3-217ENST00000580287 C16orf71Q8IYS4 520 aaPredicted RBP15.74■□□□□ 0.11
CDK5RAP3-217ENST00000580287 LINC00116Q8NCU8 138 aa15.74■□□□□ 0.11
CDK5RAP3-217ENST00000580287 DCTPP1Q9H773 170 aa15.74■□□□□ 0.11
CDK5RAP3-217ENST00000580287 TRIM37O94972 964 aa15.74■□□□□ 0.11
CDK5RAP3-217ENST00000580287 GPTP24298 496 aa15.74■□□□□ 0.11
CDK5RAP3-217ENST00000580287 ATP8B2P98198 1209 aa15.74■□□□□ 0.11
CDK5RAP3-217ENST00000580287 EPHA10Q5JZY3 1008 aa15.74■□□□□ 0.11
CDK5RAP3-217ENST00000580287 UBE3BQ7Z3V4 1068 aa15.74■□□□□ 0.11
CDK5RAP3-217ENST00000580287 FBXO41Q8TF61 875 aa15.74■□□□□ 0.11
CDK5RAP3-217ENST00000580287 A0A087WZG4 1122 aa15.73■□□□□ 0.11
CDK5RAP3-217ENST00000580287 RBM6P78332 1123 aaKnown RBP15.73■□□□□ 0.11
CDK5RAP3-217ENST00000580287 NUCB1Q02818 461 aa15.73■□□□□ 0.11
CDK5RAP3-217ENST00000580287 SMARCC1Q92922 1105 aaPredicted RBP15.73■□□□□ 0.11
CDK5RAP3-217ENST00000580287 SRGAP3O43295 1099 aa15.73■□□□□ 0.11
CDK5RAP3-217ENST00000580287 CHD1LQ86WJ1 897 aa15.73■□□□□ 0.11
CDK5RAP3-217ENST00000580287 CCDC87Q9NVE4 849 aa15.73■□□□□ 0.11
CDK5RAP3-217ENST00000580287 POTEAQ6S8J7 498 aa15.72■□□□□ 0.11
CDK5RAP3-217ENST00000580287 BICC1Q9H694 974 aaKnown RBP15.72■□□□□ 0.11
CDK5RAP3-217ENST00000580287 SYNE4Q8N205 404 aa15.72■□□□□ 0.11
CDK5RAP3-217ENST00000580287 UPF2Q9HAU5 1272 aaKnown RBP15.72■□□□□ 0.11
CDK5RAP3-217ENST00000580287 LAMB4A4D0S4 1761 aa15.71■□□□□ 0.11
CDK5RAP3-217ENST00000580287 KIF6Q6ZMV9 814 aa15.71■□□□□ 0.11
CDK5RAP3-217ENST00000580287 DZIP3Q86Y13 1208 aaKnown RBP15.71■□□□□ 0.11
CDK5RAP3-217ENST00000580287 OTUD7AQ8TE49 926 aaPredicted RBP15.71■□□□□ 0.11
CDK5RAP3-217ENST00000580287 GCC1Q96CN9 775 aa15.71■□□□□ 0.11
CDK5RAP3-217ENST00000580287 FRAT2O75474 233 aaPredicted RBP15.71■□□□□ 0.11
CDK5RAP3-217ENST00000580287 AMIGO3Q86WK7 504 aa15.71■□□□□ 0.11
CDK5RAP3-217ENST00000580287 RXRBP28702 533 aa15.7■□□□□ 0.1
CDK5RAP3-217ENST00000580287 EIF5P55010 431 aaKnown RBP15.7■□□□□ 0.1
CDK5RAP3-217ENST00000580287 KLHDC4Q8TBB5 520 aa15.7■□□□□ 0.1
CDK5RAP3-217ENST00000580287 SLKQ9H2G2 1235 aaPredicted RBP15.7■□□□□ 0.1
CDK5RAP3-217ENST00000580287 CCNL1Q9UK58 526 aaPredicted RBP15.7■□□□□ 0.1
CDK5RAP3-217ENST00000580287 PA2G4Q9UQ80 394 aaKnown RBP15.7■□□□□ 0.1
CDK5RAP3-217ENST00000580287 IL6STP40189 918 aaPredicted RBP15.7■□□□□ 0.1
CDK5RAP3-217ENST00000580287 MAP3K15Q6ZN16 1313 aa15.69■□□□□ 0.1
CDK5RAP3-217ENST00000580287 FAM177BA6PVY3 158 aa15.69■□□□□ 0.1
CDK5RAP3-217ENST00000580287 HMMRO75330 724 aa15.69■□□□□ 0.1
CDK5RAP3-217ENST00000580287 TCIRG1Q13488 830 aa15.69■□□□□ 0.1
CDK5RAP3-217ENST00000580287 SPRYD3Q8NCJ5 442 aa15.69■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 75.2 ms