RNA–Protein interactions for RNA: ENST00000564634.5

CYLD-208, Transcript of CYLD lysine 63 deubiquitinase, human

TSL 3

Gene CYLD, Length 539 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CYLD-208	ENST00000564634	PHACTR3	Q96KR7	559 aa		33.46	■■■□□ 2.95
CYLD-208	ENST00000564634	PRKRIP1	Q9H875	184 aa	Predicted RBP	33.46	■■■□□ 2.95
CYLD-208	ENST00000564634	PDZRN3	Q9UPQ7	1066 aa		33.46	■■■□□ 2.95
CYLD-208	ENST00000564634	KCNQ3	O43525	872 aa		33.45	■■■□□ 2.95
CYLD-208	ENST00000564634	CAMTA2	O94983	1202 aa		33.45	■■■□□ 2.95
CYLD-208	ENST00000564634	NPM2	Q86SE8	214 aa	Known RBP	33.44	■■■□□ 2.94
CYLD-208	ENST00000564634	SETDB2	Q96T68	719 aa		33.44	■■■□□ 2.94
CYLD-208	ENST00000564634	PIP4K2A	P48426	406 aa	Predicted RBP	33.43	■■■□□ 2.94
CYLD-208	ENST00000564634	TNS4	Q8IZW8	715 aa		33.43	■■■□□ 2.94
CYLD-208	ENST00000564634	TAOK3	Q9H2K8	898 aa		33.43	■■■□□ 2.94
CYLD-208	ENST00000564634	SLX4	Q8IY92	1834 aa		33.43	■■■□□ 2.94
CYLD-208	ENST00000564634	CEMIP	Q8WUJ3	1361 aa		33.43	■■■□□ 2.94
CYLD-208	ENST00000564634	HSPA1A	P0DMV8	641 aa	Known RBP	33.42	■■■□□ 2.94
CYLD-208	ENST00000564634	HSPA1B	P0DMV9	641 aa	Known RBP	33.42	■■■□□ 2.94
CYLD-208	ENST00000564634	ST5	P78524	1137 aa		33.41	■■■□□ 2.94
CYLD-208	ENST00000564634	BTBD11	A6QL63	1104 aa		33.4	■■■□□ 2.94
CYLD-208	ENST00000564634	PRPF40B	Q6NWY9	871 aa	Known RBP	33.4	■■■□□ 2.94
CYLD-208	ENST00000564634	DZIP3	Q86Y13	1208 aa	Known RBP	33.4	■■■□□ 2.94
CYLD-208	ENST00000564634	ARFGEF2	Q9Y6D5	1785 aa		33.39	■■■□□ 2.94
CYLD-208	ENST00000564634	LTBP3	Q9NS15	1303 aa		33.39	■■■□□ 2.94
CYLD-208	ENST00000564634	NEFM	P07197	916 aa		33.38	■■■□□ 2.93
CYLD-208	ENST00000564634	CNKSR1	Q969H4	720 aa		33.38	■■■□□ 2.93
CYLD-208	ENST00000564634	PNN	Q9H307	717 aa	Known RBP	33.38	■■■□□ 2.93
CYLD-208	ENST00000564634	SRGN	P10124	158 aa		33.37	■■■□□ 2.93
CYLD-208	ENST00000564634	STYK1	Q6J9G0	422 aa		33.37	■■■□□ 2.93
CYLD-208	ENST00000564634	PRAMEF22	A3QJZ6	481 aa		33.36	■■■□□ 2.93
CYLD-208	ENST00000564634	DDN	O94850	711 aa	Predicted RBP	33.36	■■■□□ 2.93
CYLD-208	ENST00000564634	POTEI	P0CG38	1075 aa		33.35	■■■□□ 2.93
CYLD-208	ENST00000564634	POTEJ	P0CG39	1038 aa		33.35	■■■□□ 2.93
CYLD-208	ENST00000564634	USP16	Q9Y5T5	823 aa		33.35	■■■□□ 2.93
CYLD-208	ENST00000564634	MASTL	Q96GX5	879 aa		33.34	■■■□□ 2.93
CYLD-208	ENST00000564634	CHADL	Q6NUI6	762 aa		33.33	■■■□□ 2.93
CYLD-208	ENST00000564634	NBPF5P	Q86XG9	351 aa	Predicted RBP	33.33	■■■□□ 2.93
CYLD-208	ENST00000564634	PLEKHF1	Q96S99	279 aa		33.33	■■■□□ 2.93
CYLD-208	ENST00000564634	SOGA3	Q5TF21	947 aa		33.31	■■■□□ 2.92
CYLD-208	ENST00000564634	MKRN1	Q9UHC7	482 aa	Known RBP	33.3	■■■□□ 2.92
CYLD-208	ENST00000564634	MCM10	Q7L590	875 aa		33.29	■■■□□ 2.92
CYLD-208	ENST00000564634	RTF1	Q92541	710 aa	Known RBP	33.29	■■■□□ 2.92
CYLD-208	ENST00000564634	HTATSF1	O43719	755 aa	Known RBP	33.28	■■■□□ 2.92
CYLD-208	ENST00000564634	CREBZF	Q9NS37	354 aa		33.27	■■■□□ 2.92
CYLD-208	ENST00000564634	ZNF652	Q9Y2D9	606 aa		33.27	■■■□□ 2.92
CYLD-208	ENST00000564634	CCDC93	Q567U6	631 aa		33.26	■■■□□ 2.91
CYLD-208	ENST00000564634	MAPK8IP3	Q9UPT6	1336 aa		33.26	■■■□□ 2.91
CYLD-208	ENST00000564634	SNRPA1	P09661	255 aa	Known RBP	33.25	■■■□□ 2.91
CYLD-208	ENST00000564634	FAM177B	A6PVY3	158 aa		33.24	■■■□□ 2.91
CYLD-208	ENST00000564634	DCTN1	Q14203	1278 aa		33.24	■■■□□ 2.91
CYLD-208	ENST00000564634	WDR43	Q15061	677 aa	Known RBP eCLIP	33.24	■■■□□ 2.91
CYLD-208	ENST00000564634	CLEC4G	Q6UXB4	293 aa		33.24	■■■□□ 2.91
CYLD-208	ENST00000564634	NPR1	P16066	1061 aa		33.23	■■■□□ 2.91
CYLD-208	ENST00000564634	OLFM4	Q6UX06	510 aa		33.23	■■■□□ 2.91
CYLD-208	ENST00000564634	C7orf43	Q8WVR3	580 aa		33.23	■■■□□ 2.91
CYLD-208	ENST00000564634	NIP7	Q9Y221	180 aa	Known RBP eCLIP	33.23	■■■□□ 2.91
CYLD-208	ENST00000564634	IQCA1L	A6NCM1	817 aa		33.22	■■■□□ 2.91
CYLD-208	ENST00000564634	NBPF26	B4DH59	902 aa		33.22	■■■□□ 2.91
CYLD-208	ENST00000564634	NFE2L2	Q16236	605 aa		33.22	■■■□□ 2.91
CYLD-208	ENST00000564634	NBPF10	Q6P3W6	841 aa	Known RBP	33.22	■■■□□ 2.91
CYLD-208	ENST00000564634	NBPF15	Q8N660	670 aa		33.22	■■■□□ 2.91
CYLD-208	ENST00000564634	ZNF277	Q9NRM2	450 aa	Predicted RBP	33.22	■■■□□ 2.91
CYLD-208	ENST00000564634	ZNF541	Q9H0D2	1346 aa		33.22	■■■□□ 2.91
CYLD-208	ENST00000564634	TAF1D	Q9H5J8	278 aa	Predicted RBP	33.21	■■■□□ 2.91
CYLD-208	ENST00000564634	SCN4A	P35499	1836 aa		33.21	■■■□□ 2.91
CYLD-208	ENST00000564634	FKBP4	Q02790	459 aa	Known RBP eCLIP	33.2	■■■□□ 2.91
CYLD-208	ENST00000564634	LDHD	Q86WU2	507 aa		33.2	■■■□□ 2.91
CYLD-208	ENST00000564634	L3MBTL3	Q96JM7	780 aa	Predicted RBP	33.2	■■■□□ 2.91
CYLD-208	ENST00000564634	DLG5	Q8TDM6	1919 aa		33.2	■■■□□ 2.9
CYLD-208	ENST00000564634	ANP32C	O43423	234 aa		33.19	■■■□□ 2.9
CYLD-208	ENST00000564634	TPTE2	Q6XPS3	522 aa		33.18	■■■□□ 2.9
CYLD-208	ENST00000564634	EAPP	Q56P03	285 aa	Predicted RBP	33.17	■■■□□ 2.9
CYLD-208	ENST00000564634	PASK	Q96RG2	1323 aa		33.17	■■■□□ 2.9
CYLD-208	ENST00000564634	CNTNAP1	P78357	1384 aa		33.17	■■■□□ 2.9
CYLD-208	ENST00000564634	LAMB4	A4D0S4	1761 aa		33.16	■■■□□ 2.9
CYLD-208	ENST00000564634	KLRG2	A4D1S0	409 aa	Predicted RBP	33.16	■■■□□ 2.9
CYLD-208	ENST00000564634	ADAMTS8	Q9UP79	889 aa		33.16	■■■□□ 2.9
CYLD-208	ENST00000564634	HLF	Q16534	295 aa		33.15	■■■□□ 2.9
CYLD-208	ENST00000564634	RUNDC1	Q96C34	613 aa		33.13	■■■□□ 2.89
CYLD-208	ENST00000564634	MIS18A	Q9NYP9	233 aa		33.13	■■■□□ 2.89
CYLD-208	ENST00000564634	ABCC12	Q96J65	1359 aa		33.11	■■■□□ 2.89
CYLD-208	ENST00000564634	FOXN1	O15353	648 aa		33.11	■■■□□ 2.89
CYLD-208	ENST00000564634	GTF2E1	P29083	439 aa	Predicted RBP	33.11	■■■□□ 2.89
CYLD-208	ENST00000564634	TAF7	Q15545	349 aa	Predicted RBP	33.11	■■■□□ 2.89
CYLD-208	ENST00000564634	RTKN2	Q8IZC4	609 aa		33.11	■■■□□ 2.89
CYLD-208	ENST00000564634	HACL1	Q9UJ83	578 aa		33.11	■■■□□ 2.89
CYLD-208	ENST00000564634	CLEC11A	Q9Y240	323 aa		33.11	■■■□□ 2.89
CYLD-208	ENST00000564634	RNF123	Q5XPI4	1314 aa		33.1	■■■□□ 2.89
CYLD-208	ENST00000564634	IARS	P41252	1262 aa	Known RBP	33.1	■■■□□ 2.89
CYLD-208	ENST00000564634	TMPO	P42166	694 aa	Known RBP	33.1	■■■□□ 2.89
CYLD-208	ENST00000564634	RIPK4	P57078	832 aa		33.1	■■■□□ 2.89
CYLD-208	ENST00000564634	CCDC146	Q8IYE0	955 aa		33.1	■■■□□ 2.89
CYLD-208	ENST00000564634	NGEF	Q8N5V2	710 aa		33.1	■■■□□ 2.89
CYLD-208	ENST00000564634	ADAMTSL1	Q8N6G6	1762 aa		33.1	■■■□□ 2.89
CYLD-208	ENST00000564634	RGL2	O15211	777 aa		33.09	■■■□□ 2.89
CYLD-208	ENST00000564634	SYNE4	Q8N205	404 aa		33.09	■■■□□ 2.89
CYLD-208	ENST00000564634	TMEM88B	A6NKF7	163 aa		33.08	■■■□□ 2.89
CYLD-208	ENST00000564634	EPHX2	P34913	555 aa		33.08	■■■□□ 2.89
CYLD-208	ENST00000564634	ITGBL1	O95965	494 aa	Predicted RBP	33.07	■■■□□ 2.88
CYLD-208	ENST00000564634	NUTM1	Q86Y26	1132 aa		33.07	■■■□□ 2.88
CYLD-208	ENST00000564634	ALDH1B1	P30837	517 aa		33.06	■■■□□ 2.88
CYLD-208	ENST00000564634	VEGFB	P49765	207 aa		33.06	■■■□□ 2.88
CYLD-208	ENST00000564634	KDM3B	Q7LBC6	1761 aa		33.06	■■■□□ 2.88
CYLD-208	ENST00000564634	SNED1	Q8TER0	1413 aa		33.05	■■■□□ 2.88

Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms