RNA–Protein interactions for RNA: ENST00000563220.1

COMMD4-208, Transcript of COMM domain containing 4, humanhuman

TSL 2

Gene COMMD4, Length 1,897 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-208ENST00000563220 UTYO14607 1347 aa22.5■■□□□ 1.19
COMMD4-208ENST00000563220 GRM8O00222 908 aa22.5■■□□□ 1.19
COMMD4-208ENST00000563220 ONECUT3O60422 494 aaPredicted RBP22.49■■□□□ 1.19
COMMD4-208ENST00000563220 FAM161AQ3B820 660 aa22.49■■□□□ 1.19
COMMD4-208ENST00000563220 C8orf34Q49A92 452 aa22.49■■□□□ 1.19
COMMD4-208ENST00000563220 GCKRQ14397 625 aa22.49■■□□□ 1.19
COMMD4-208ENST00000563220 PPP1R42Q7Z4L9 355 aa22.49■■□□□ 1.19
COMMD4-208ENST00000563220 ANP32EQ9BTT0 268 aa22.48■■□□□ 1.19
COMMD4-208ENST00000563220 THSD7AQ9UPZ6 1657 aa22.48■■□□□ 1.19
COMMD4-208ENST00000563220 IBTKQ9P2D0 1353 aaPredicted RBP22.48■■□□□ 1.19
COMMD4-208ENST00000563220 ATP5J2-PTCD1G3V325 749 aa22.47■■□□□ 1.19
COMMD4-208ENST00000563220 SSH3Q8TE77 659 aa22.47■■□□□ 1.19
COMMD4-208ENST00000563220 QTRT2Q9H974 415 aaKnown RBP22.47■■□□□ 1.19
COMMD4-208ENST00000563220 POLA2Q14181 598 aa22.47■■□□□ 1.19
COMMD4-208ENST00000563220 SUCLG2Q96I99 432 aa22.47■■□□□ 1.19
COMMD4-208ENST00000563220 ZBTB3Q9H5J0 574 aa22.47■■□□□ 1.19
COMMD4-208ENST00000563220 ZNF330Q9Y3S2 320 aaPredicted RBP22.47■■□□□ 1.19
COMMD4-208ENST00000563220 LOC102724428A0A0B4J2F2 783 aa22.46■■□□□ 1.19
COMMD4-208ENST00000563220 SIK1P57059 783 aa22.46■■□□□ 1.19
COMMD4-208ENST00000563220 FAM182BQ5T319 152 aa22.46■■□□□ 1.19
COMMD4-208ENST00000563220 PTF1AQ7RTS3 328 aa22.46■■□□□ 1.19
COMMD4-208ENST00000563220 KAZALD1Q96I82 304 aa22.46■■□□□ 1.19
COMMD4-208ENST00000563220 EXOC6BQ9Y2D4 811 aa22.46■■□□□ 1.19
COMMD4-208ENST00000563220 ZBTB1Q9Y2K1 713 aa22.46■■□□□ 1.19
COMMD4-208ENST00000563220 APBB1O00213 710 aa22.45■■□□□ 1.19
COMMD4-208ENST00000563220 PALLDQ8WX93 1383 aa22.45■■□□□ 1.18
COMMD4-208ENST00000563220 SMARCA5O60264 1052 aaPredicted RBP22.45■■□□□ 1.18
COMMD4-208ENST00000563220 ATP6V1AP38606 617 aa22.45■■□□□ 1.18
COMMD4-208ENST00000563220 SRGAP3O43295 1099 aa22.44■■□□□ 1.18
COMMD4-208ENST00000563220 SEPT12Q8IYM1 358 aa22.44■■□□□ 1.18
COMMD4-208ENST00000563220 C16orf71Q8IYS4 520 aaPredicted RBP22.44■■□□□ 1.18
COMMD4-208ENST00000563220 SMARCC1Q92922 1105 aaPredicted RBP22.44■■□□□ 1.18
COMMD4-208ENST00000563220 HDAC5Q9UQL6 1122 aa22.44■■□□□ 1.18
COMMD4-208ENST00000563220 MTX1Q13505 466 aa22.43■■□□□ 1.18
COMMD4-208ENST00000563220 ITPK1Q13572 414 aa22.43■■□□□ 1.18
COMMD4-208ENST00000563220 JARID2Q92833 1246 aaPredicted RBP22.43■■□□□ 1.18
COMMD4-208ENST00000563220 ARFGEF2Q9Y6D5 1785 aa22.42■■□□□ 1.18
COMMD4-208ENST00000563220 BCL11AQ9H165 835 aa22.41■■□□□ 1.18
COMMD4-208ENST00000563220 BICC1Q9H694 974 aaKnown RBP22.41■■□□□ 1.18
COMMD4-208ENST00000563220 TJP1Q07157 1748 aa22.41■■□□□ 1.18
COMMD4-208ENST00000563220 INTS5Q6P9B9 1019 aaKnown RBP22.41■■□□□ 1.18
COMMD4-208ENST00000563220 ZBTB47Q9UFB7 747 aaPredicted RBP22.41■■□□□ 1.18
COMMD4-208ENST00000563220 A0A087WZG4 1122 aa22.4■■□□□ 1.18
COMMD4-208ENST00000563220 PLEKHM2Q8IWE5 1019 aa22.4■■□□□ 1.18
COMMD4-208ENST00000563220 IL6STP40189 918 aaPredicted RBP22.39■■□□□ 1.18
COMMD4-208ENST00000563220 CASP7P55210 303 aa22.39■■□□□ 1.18
COMMD4-208ENST00000563220 TCIRG1Q13488 830 aa22.39■■□□□ 1.18
COMMD4-208ENST00000563220 EPHA10Q5JZY3 1008 aa22.39■■□□□ 1.18
COMMD4-208ENST00000563220 KIF6Q6ZMV9 814 aa22.39■■□□□ 1.18
COMMD4-208ENST00000563220 OTUD7AQ8TE49 926 aaPredicted RBP22.39■■□□□ 1.18
COMMD4-208ENST00000563220 ARXQ96QS3 562 aa22.39■■□□□ 1.18
COMMD4-208ENST00000563220 SURF6O75683 361 aaKnown RBP22.39■■□□□ 1.17
COMMD4-208ENST00000563220 CRKLP46109 303 aaKnown RBP22.39■■□□□ 1.17
COMMD4-208ENST00000563220 UBE3BQ7Z3V4 1068 aa22.39■■□□□ 1.17
COMMD4-208ENST00000563220 ISCA1Q9BUE6 129 aa22.39■■□□□ 1.17
COMMD4-208ENST00000563220 MAP3K15Q6ZN16 1313 aa22.39■■□□□ 1.17
COMMD4-208ENST00000563220 H7C1W4 665 aa22.38■■□□□ 1.17
COMMD4-208ENST00000563220 CCDC87Q9NVE4 849 aa22.38■■□□□ 1.17
COMMD4-208ENST00000563220 CWC25Q9NXE8 425 aaPredicted RBP22.38■■□□□ 1.17
COMMD4-208ENST00000563220 NUP188Q5SRE5 1749 aa22.38■■□□□ 1.17
COMMD4-208ENST00000563220 HLFQ16534 295 aa22.37■■□□□ 1.17
COMMD4-208ENST00000563220 CCDC191Q8NCU4 936 aa22.37■■□□□ 1.17
COMMD4-208ENST00000563220 LRRCC1Q9C099 1032 aa22.37■■□□□ 1.17
COMMD4-208ENST00000563220 EIF5P55010 431 aaKnown RBP22.37■■□□□ 1.17
COMMD4-208ENST00000563220 GIGYF2Q6Y7W6 1299 aaKnown RBP22.36■■□□□ 1.17
COMMD4-208ENST00000563220 NOP58Q9Y2X3 529 aaKnown RBP22.36■■□□□ 1.17
COMMD4-208ENST00000563220 TRIM28Q13263 835 aaKnown RBP22.35■■□□□ 1.17
COMMD4-208ENST00000563220 TBC1D2BQ9UPU7 963 aa22.35■■□□□ 1.17
COMMD4-208ENST00000563220 RAB11FIP3O75154 756 aa22.34■■□□□ 1.17
COMMD4-208ENST00000563220 KCNQ4P56696 695 aa22.34■■□□□ 1.17
COMMD4-208ENST00000563220 PA2G4Q9UQ80 394 aaKnown RBP22.34■■□□□ 1.17
COMMD4-208ENST00000563220 COL15A1P39059 1388 aa22.34■■□□□ 1.17
COMMD4-208ENST00000563220 BMP2KLQ5H9B9 411 aa22.34■■□□□ 1.17
COMMD4-208ENST00000563220 DZIP3Q86Y13 1208 aaKnown RBP22.34■■□□□ 1.17
COMMD4-208ENST00000563220 SEC24BO95487 1268 aa22.33■■□□□ 1.17
COMMD4-208ENST00000563220 RTL5Q5HYW3 569 aaPredicted RBP22.33■■□□□ 1.17
COMMD4-208ENST00000563220 LINC00116Q8NCU8 138 aa22.33■■□□□ 1.17
COMMD4-208ENST00000563220 RABL6Q3YEC7 729 aaPredicted RBP22.32■■□□□ 1.16
COMMD4-208ENST00000563220 RHPN1Q8TCX5 695 aa22.32■■□□□ 1.16
COMMD4-208ENST00000563220 AFDNP55196 1824 aaKnown RBP22.32■■□□□ 1.16
COMMD4-208ENST00000563220 ERVV-1B6SEH8 477 aa22.32■■□□□ 1.16
COMMD4-208ENST00000563220 NPM2Q86SE8 214 aaKnown RBP22.32■■□□□ 1.16
COMMD4-208ENST00000563220 GSPT1P15170 499 aaKnown RBP22.31■■□□□ 1.16
COMMD4-208ENST00000563220 IL1RAPL2Q9NP60 686 aa22.31■■□□□ 1.16
COMMD4-208ENST00000563220 SALL3Q9BXA9 1300 aa22.31■■□□□ 1.16
COMMD4-208ENST00000563220 FOXO4P98177 505 aa22.3■■□□□ 1.16
COMMD4-208ENST00000563220 HSP90AB4PQ58FF6 505 aa22.3■■□□□ 1.16
COMMD4-208ENST00000563220 KIF1BPQ96EK5 621 aa22.3■■□□□ 1.16
COMMD4-208ENST00000563220 CICQ96RK0 1608 aaPredicted RBP22.3■■□□□ 1.16
COMMD4-208ENST00000563220 GPTP24298 496 aa22.29■■□□□ 1.16
COMMD4-208ENST00000563220 HSP90AB3PQ58FF7 597 aa22.29■■□□□ 1.16
COMMD4-208ENST00000563220 TTC22Q5TAA0 569 aa22.29■■□□□ 1.16
COMMD4-208ENST00000563220 ZNF772Q68DY9 489 aaPredicted RBP22.29■■□□□ 1.16
COMMD4-208ENST00000563220 NHSQ6T4R5 1651 aa22.29■■□□□ 1.16
COMMD4-208ENST00000563220 RFX5P48382 616 aaPredicted RBP22.28■■□□□ 1.16
COMMD4-208ENST00000563220 PDE1AP54750 535 aa22.28■■□□□ 1.16
COMMD4-208ENST00000563220 NLRP10Q86W26 655 aa22.28■■□□□ 1.16
COMMD4-208ENST00000563220 KLHDC4Q8TBB5 520 aa22.28■■□□□ 1.16
COMMD4-208ENST00000563220 OSBPL3Q9H4L5 887 aa22.28■■□□□ 1.16
COMMD4-208ENST00000563220 MSH5O43196 834 aa22.28■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms