RNA–Protein interactions for RNA: ENST00000562307.1

CDH13-205, Transcript of cadherin 13, human

TSL 4

Gene CDH13, Length 539 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDH13-205	ENST00000562307	PPP1R42	Q7Z4L9	355 aa		11.85	□□□□□ -0.51
CDH13-205	ENST00000562307	GJD4	Q96KN9	370 aa	Predicted RBP	11.85	□□□□□ -0.51
CDH13-205	ENST00000562307	MYD88	Q99836	296 aa		11.85	□□□□□ -0.51
CDH13-205	ENST00000562307	RBM42	Q9BTD8	480 aa	Known RBP	11.85	□□□□□ -0.51
CDH13-205	ENST00000562307	DOT1L	Q8TEK3	1739 aa		11.85	□□□□□ -0.51
CDH13-205	ENST00000562307	ATRN	O75882	1429 aa		11.85	□□□□□ -0.51
CDH13-205	ENST00000562307	THSD7A	Q9UPZ6	1657 aa		11.84	□□□□□ -0.51
CDH13-205	ENST00000562307	SOCS7	O14512	581 aa		11.84	□□□□□ -0.51
CDH13-205	ENST00000562307	MEX3C	Q5U5Q3	659 aa	Known RBP	11.84	□□□□□ -0.51
CDH13-205	ENST00000562307	SMARCC1	Q92922	1105 aa	Predicted RBP	11.84	□□□□□ -0.51
CDH13-205	ENST00000562307	SYTL4	Q96C24	671 aa	Predicted RBP	11.84	□□□□□ -0.51
CDH13-205	ENST00000562307	KAZALD1	Q96I82	304 aa		11.84	□□□□□ -0.51
CDH13-205	ENST00000562307	NOP58	Q9Y2X3	529 aa	Known RBP	11.84	□□□□□ -0.51
CDH13-205	ENST00000562307	AFF2	P51816	1311 aa		11.84	□□□□□ -0.51
CDH13-205	ENST00000562307	RAB11FIP3	O75154	756 aa		11.83	□□□□□ -0.52
CDH13-205	ENST00000562307	TRIM28	Q13263	835 aa	Known RBP	11.83	□□□□□ -0.52
CDH13-205	ENST00000562307	BMP2KL	Q5H9B9	411 aa		11.83	□□□□□ -0.52
CDH13-205	ENST00000562307	PLEKHM2	Q8IWE5	1019 aa		11.83	□□□□□ -0.52
CDH13-205	ENST00000562307	SUCLG2	Q96I99	432 aa		11.83	□□□□□ -0.52
CDH13-205	ENST00000562307	ZBTB47	Q9UFB7	747 aa	Predicted RBP	11.83	□□□□□ -0.52
CDH13-205	ENST00000562307	CIC	Q96RK0	1608 aa	Predicted RBP	11.82	□□□□□ -0.52
CDH13-205	ENST00000562307		H7C1W4	665 aa		11.82	□□□□□ -0.52
CDH13-205	ENST00000562307	SRGAP3	O43295	1099 aa		11.82	□□□□□ -0.52
CDH13-205	ENST00000562307	CASP7	P55210	303 aa		11.82	□□□□□ -0.52
CDH13-205	ENST00000562307	ACSBG1	Q96GR2	724 aa		11.82	□□□□□ -0.52
CDH13-205	ENST00000562307	ISCA1	Q9BUE6	129 aa		11.82	□□□□□ -0.52
CDH13-205	ENST00000562307	OSBPL3	Q9H4L5	887 aa		11.82	□□□□□ -0.52
CDH13-205	ENST00000562307	TRPC5	Q9UL62	973 aa	Predicted RBP	11.82	□□□□□ -0.52
CDH13-205	ENST00000562307	ARFGEF2	Q9Y6D5	1785 aa		11.82	□□□□□ -0.52
CDH13-205	ENST00000562307	LOC102724428	A0A0B4J2F2	783 aa		11.81	□□□□□ -0.52
CDH13-205	ENST00000562307	IL6ST	P40189	918 aa	Predicted RBP	11.81	□□□□□ -0.52
CDH13-205	ENST00000562307	SIK1	P57059	783 aa		11.81	□□□□□ -0.52
CDH13-205	ENST00000562307	TCIRG1	Q13488	830 aa		11.81	□□□□□ -0.52
CDH13-205	ENST00000562307	HSP90AB4P	Q58FF6	505 aa		11.81	□□□□□ -0.52
CDH13-205	ENST00000562307	C16orf71	Q8IYS4	520 aa	Predicted RBP	11.81	□□□□□ -0.52
CDH13-205	ENST00000562307	CCDC191	Q8NCU4	936 aa		11.81	□□□□□ -0.52
CDH13-205	ENST00000562307	LRRCC1	Q9C099	1032 aa		11.81	□□□□□ -0.52
CDH13-205	ENST00000562307	EXOC6B	Q9Y2D4	811 aa		11.81	□□□□□ -0.52
CDH13-205	ENST00000562307	SALL3	Q9BXA9	1300 aa		11.81	□□□□□ -0.52
CDH13-205	ENST00000562307	TJP1	Q07157	1748 aa		11.8	□□□□□ -0.52
CDH13-205	ENST00000562307	NUP188	Q5SRE5	1749 aa		11.8	□□□□□ -0.52
CDH13-205	ENST00000562307	ATP5J2-PTCD1	G3V325	749 aa		11.8	□□□□□ -0.52
CDH13-205	ENST00000562307	KCNQ2	O43526	872 aa		11.8	□□□□□ -0.52
CDH13-205	ENST00000562307	SMARCA5	O60264	1052 aa	Predicted RBP	11.8	□□□□□ -0.52
CDH13-205	ENST00000562307	RABL6	Q3YEC7	729 aa	Predicted RBP	11.8	□□□□□ -0.52
CDH13-205	ENST00000562307	BICC1	Q9H694	974 aa	Known RBP	11.8	□□□□□ -0.52
CDH13-205	ENST00000562307	CWC25	Q9NXE8	425 aa	Predicted RBP	11.8	□□□□□ -0.52
CDH13-205	ENST00000562307	MAP3K15	Q6ZN16	1313 aa		11.8	□□□□□ -0.52
CDH13-205	ENST00000562307	PALLD	Q8WX93	1383 aa		11.79	□□□□□ -0.52
CDH13-205	ENST00000562307	ZNF831	Q5JPB2	1677 aa		11.79	□□□□□ -0.52
CDH13-205	ENST00000562307		A0A087WZG4	1122 aa		11.79	□□□□□ -0.52
CDH13-205	ENST00000562307	ERVV-1	B6SEH8	477 aa		11.79	□□□□□ -0.52
CDH13-205	ENST00000562307	SURF6	O75683	361 aa	Known RBP	11.79	□□□□□ -0.52
CDH13-205	ENST00000562307	EIF5	P55010	431 aa	Known RBP	11.79	□□□□□ -0.52
CDH13-205	ENST00000562307	INTS5	Q6P9B9	1019 aa	Known RBP	11.79	□□□□□ -0.52
CDH13-205	ENST00000562307	GIGYF2	Q6Y7W6	1299 aa	Known RBP	11.79	□□□□□ -0.52
CDH13-205	ENST00000562307	KIF6	Q6ZMV9	814 aa		11.79	□□□□□ -0.52
CDH13-205	ENST00000562307	KIF1BP	Q96EK5	621 aa		11.79	□□□□□ -0.52
CDH13-205	ENST00000562307	ZBTB3	Q9H5J0	574 aa		11.79	□□□□□ -0.52
CDH13-205	ENST00000562307	STAP2	Q9UGK3	403 aa		11.79	□□□□□ -0.52
CDH13-205	ENST00000562307	ZBTB1	Q9Y2K1	713 aa		11.79	□□□□□ -0.52
CDH13-205	ENST00000562307	ATP6V1A	P38606	617 aa		11.78	□□□□□ -0.52
CDH13-205	ENST00000562307	ITPK1	Q13572	414 aa		11.78	□□□□□ -0.52
CDH13-205	ENST00000562307	EPHA10	Q5JZY3	1008 aa		11.78	□□□□□ -0.52
CDH13-205	ENST00000562307	TTC22	Q5TAA0	569 aa		11.78	□□□□□ -0.52
CDH13-205	ENST00000562307	RHPN1	Q8TCX5	695 aa		11.78	□□□□□ -0.52
CDH13-205	ENST00000562307	OTUD7A	Q8TE49	926 aa	Predicted RBP	11.78	□□□□□ -0.52
CDH13-205	ENST00000562307	QTRT2	Q9H974	415 aa	Known RBP	11.78	□□□□□ -0.52
CDH13-205	ENST00000562307	CCDC87	Q9NVE4	849 aa		11.78	□□□□□ -0.52
CDH13-205	ENST00000562307	RREB1	Q92766	1687 aa		11.78	□□□□□ -0.52
CDH13-205	ENST00000562307	APBB1	O00213	710 aa		11.77	□□□□□ -0.53
CDH13-205	ENST00000562307	SEC24B	O95487	1268 aa		11.77	□□□□□ -0.53
CDH13-205	ENST00000562307	GSPT1	P15170	499 aa	Known RBP	11.77	□□□□□ -0.53
CDH13-205	ENST00000562307	CRKL	P46109	303 aa	Known RBP	11.77	□□□□□ -0.53
CDH13-205	ENST00000562307	PDE1A	P54750	535 aa		11.77	□□□□□ -0.53
CDH13-205	ENST00000562307	FOXO4	P98177	505 aa		11.77	□□□□□ -0.53
CDH13-205	ENST00000562307	HSP90AB3P	Q58FF7	597 aa		11.77	□□□□□ -0.53
CDH13-205	ENST00000562307	UBE3B	Q7Z3V4	1068 aa		11.77	□□□□□ -0.53
CDH13-205	ENST00000562307	ERC1	Q8IUD2	1116 aa		11.77	□□□□□ -0.53
CDH13-205	ENST00000562307	AOX1	Q06278	1338 aa		11.77	□□□□□ -0.53
CDH13-205	ENST00000562307		A0A0G2JS52	829 aa		11.76	□□□□□ -0.53
CDH13-205	ENST00000562307	PCCA	P05165	728 aa	Predicted RBP	11.76	□□□□□ -0.53
CDH13-205	ENST00000562307	RFX5	P48382	616 aa	Predicted RBP	11.76	□□□□□ -0.53
CDH13-205	ENST00000562307	MYT1	Q01538	1121 aa		11.76	□□□□□ -0.53
CDH13-205	ENST00000562307	SEPT12	Q8IYM1	358 aa		11.76	□□□□□ -0.53
CDH13-205	ENST00000562307	COPRS	Q9NQ92	184 aa		11.76	□□□□□ -0.53
CDH13-205	ENST00000562307	ANP32A	P39687	249 aa	Known RBP	11.75	□□□□□ -0.53
CDH13-205	ENST00000562307	HLF	Q16534	295 aa		11.75	□□□□□ -0.53
CDH13-205	ENST00000562307	DZIP3	Q86Y13	1208 aa	Known RBP	11.75	□□□□□ -0.53
CDH13-205	ENST00000562307	PLA2G12B	Q9BX93	195 aa		11.75	□□□□□ -0.53
CDH13-205	ENST00000562307	NHS	Q6T4R5	1651 aa		11.75	□□□□□ -0.53
CDH13-205	ENST00000562307	AFDN	P55196	1824 aa	Known RBP	11.74	□□□□□ -0.53
CDH13-205	ENST00000562307	RGL2	O15211	777 aa		11.74	□□□□□ -0.53
CDH13-205	ENST00000562307	MX1	P20591	662 aa		11.74	□□□□□ -0.53
CDH13-205	ENST00000562307	RC3H1	Q5TC82	1133 aa	Known RBP	11.74	□□□□□ -0.53
CDH13-205	ENST00000562307	PTF1A	Q7RTS3	328 aa		11.74	□□□□□ -0.53
CDH13-205	ENST00000562307	NLRP10	Q86W26	655 aa		11.74	□□□□□ -0.53
CDH13-205	ENST00000562307	ZNF34	Q8IZ26	560 aa		11.74	□□□□□ -0.53
CDH13-205	ENST00000562307	JARID2	Q92833	1246 aa	Predicted RBP	11.74	□□□□□ -0.53
CDH13-205	ENST00000562307	PA2G4	Q9UQ80	394 aa	Known RBP	11.74	□□□□□ -0.53

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