RNA–Protein interactions for RNA: ENST00000560514.1

TSPAN3-208, Transcript of tetraspanin 3, humanhuman

TSL 2

Gene TSPAN3, Length 638 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN3-208ENST00000560514 SRGNP10124 158 aa24.07■■□□□ 1.44
TSPAN3-208ENST00000560514 EAPPQ56P03 285 aaPredicted RBP24.07■■□□□ 1.44
TSPAN3-208ENST00000560514 TAF1DQ9H5J8 278 aaPredicted RBP24.07■■□□□ 1.44
TSPAN3-208ENST00000560514 CLEC11AQ9Y240 323 aa24.07■■□□□ 1.44
TSPAN3-208ENST00000560514 PASKQ96RG2 1323 aa24.07■■□□□ 1.44
TSPAN3-208ENST00000560514 FMNL2Q96PY5 1086 aa24.06■■□□□ 1.44
TSPAN3-208ENST00000560514 ARFGEF2Q9Y6D5 1785 aa24.06■■□□□ 1.44
TSPAN3-208ENST00000560514 CCDC93Q567U6 631 aa24.05■■□□□ 1.44
TSPAN3-208ENST00000560514 L3MBTL3Q96JM7 780 aaPredicted RBP24.05■■□□□ 1.44
TSPAN3-208ENST00000560514 GNAT3A8MTJ3 354 aa24.04■■□□□ 1.44
TSPAN3-208ENST00000560514 A1BGP04217 495 aa24.04■■□□□ 1.44
TSPAN3-208ENST00000560514 VEGFBP49765 207 aa24.04■■□□□ 1.44
TSPAN3-208ENST00000560514 AMER1Q5JTC6 1135 aaPredicted RBP24.04■■□□□ 1.44
TSPAN3-208ENST00000560514 GAS2L2Q8NHY3 880 aa24.04■■□□□ 1.44
TSPAN3-208ENST00000560514 CLSPNQ9HAW4 1339 aa24.04■■□□□ 1.44
TSPAN3-208ENST00000560514 CAMTA2O94983 1202 aa24.03■■□□□ 1.44
TSPAN3-208ENST00000560514 DZIP3Q86Y13 1208 aaKnown RBP24.03■■□□□ 1.44
TSPAN3-208ENST00000560514 NBPF5PQ86XG9 351 aaPredicted RBP24.02■■□□□ 1.44
TSPAN3-208ENST00000560514 HACL1Q9UJ83 578 aa24.02■■□□□ 1.44
TSPAN3-208ENST00000560514 ZNF652Q9Y2D9 606 aa24.01■■□□□ 1.43
TSPAN3-208ENST00000560514 U2SURPO15042 1029 aaKnown RBP24■■□□□ 1.43
TSPAN3-208ENST00000560514 LBX1P52954 281 aa24■■□□□ 1.43
TSPAN3-208ENST00000560514 FKBP4Q02790 459 aaKnown RBP eCLIP24■■□□□ 1.43
TSPAN3-208ENST00000560514 IL17REQ8NFR9 667 aa24■■□□□ 1.43
TSPAN3-208ENST00000560514 BCORQ6W2J9 1755 aa23.99■■□□□ 1.43
TSPAN3-208ENST00000560514 ITGBL1O95965 494 aaPredicted RBP23.99■■□□□ 1.43
TSPAN3-208ENST00000560514 NPR1P16066 1061 aa23.99■■□□□ 1.43
TSPAN3-208ENST00000560514 PNMA8AQ86V59 439 aaPredicted RBP23.99■■□□□ 1.43
TSPAN3-208ENST00000560514 WBP1LQ9NX94 342 aa23.99■■□□□ 1.43
TSPAN3-208ENST00000560514 EPHX2P34913 555 aa23.98■■□□□ 1.43
TSPAN3-208ENST00000560514 DEFB115Q30KQ5 88 aa23.98■■□□□ 1.43
TSPAN3-208ENST00000560514 RTKN2Q8IZC4 609 aa23.98■■□□□ 1.43
TSPAN3-208ENST00000560514 PCGF6Q9BYE7 350 aa23.98■■□□□ 1.43
TSPAN3-208ENST00000560514 ZNF277Q9NRM2 450 aaPredicted RBP23.98■■□□□ 1.43
TSPAN3-208ENST00000560514 SIPA1L3O60292 1781 aaPredicted RBP23.98■■□□□ 1.43
TSPAN3-208ENST00000560514 BTBD11A6QL63 1104 aa23.97■■□□□ 1.43
TSPAN3-208ENST00000560514 CLEC4GQ6UXB4 293 aa23.97■■□□□ 1.43
TSPAN3-208ENST00000560514 ZNF541Q9H0D2 1346 aa23.97■■□□□ 1.43
TSPAN3-208ENST00000560514 CC2D1BQ5T0F9 858 aaKnown RBP23.96■■□□□ 1.43
TSPAN3-208ENST00000560514 TPTE2Q6XPS3 522 aa23.96■■□□□ 1.43
TSPAN3-208ENST00000560514 CNTROBQ8N137 903 aa23.96■■□□□ 1.43
TSPAN3-208ENST00000560514 C7orf43Q8WVR3 580 aa23.96■■□□□ 1.43
TSPAN3-208ENST00000560514 MAP2K1Q02750 393 aaPredicted RBP23.95■■□□□ 1.42
TSPAN3-208ENST00000560514 ABT1Q9ULW3 272 aaKnown RBP23.95■■□□□ 1.42
TSPAN3-208ENST00000560514 RNF123Q5XPI4 1314 aa23.94■■□□□ 1.42
TSPAN3-208ENST00000560514 RASSF10A6NK89 507 aa23.94■■□□□ 1.42
TSPAN3-208ENST00000560514 PIP4K2AP48426 406 aaPredicted RBP23.93■■□□□ 1.42
TSPAN3-208ENST00000560514 MAP1SQ66K74 1059 aaPredicted RBP23.93■■□□□ 1.42
TSPAN3-208ENST00000560514 WDR33Q9C0J8 1336 aaKnown RBP23.92■■□□□ 1.42
TSPAN3-208ENST00000560514 GTF2E1P29083 439 aaPredicted RBP23.92■■□□□ 1.42
TSPAN3-208ENST00000560514 ALDH1B1P30837 517 aa23.92■■□□□ 1.42
TSPAN3-208ENST00000560514 IARSP41252 1262 aaKnown RBP23.92■■□□□ 1.42
TSPAN3-208ENST00000560514 JDP2Q8WYK2 163 aa23.92■■□□□ 1.42
TSPAN3-208ENST00000560514 ABHD8Q96I13 439 aa23.92■■□□□ 1.42
TSPAN3-208ENST00000560514 NIP7Q9Y221 180 aaKnown RBP eCLIP23.92■■□□□ 1.42
TSPAN3-208ENST00000560514 USP16Q9Y5T5 823 aa23.92■■□□□ 1.42
TSPAN3-208ENST00000560514 FAM177BA6PVY3 158 aa23.91■■□□□ 1.42
TSPAN3-208ENST00000560514 KCNQ3O43525 872 aa23.91■■□□□ 1.42
TSPAN3-208ENST00000560514 HSPA8P11142 646 aaKnown RBP23.91■■□□□ 1.42
TSPAN3-208ENST00000560514 GPC2Q8N158 579 aa23.91■■□□□ 1.42
TSPAN3-208ENST00000560514 BEGAINQ9BUH8 593 aa23.91■■□□□ 1.42
TSPAN3-208ENST00000560514 SYNE4Q8N205 404 aa23.9■■□□□ 1.42
TSPAN3-208ENST00000560514 ADAMTSL1Q8N6G6 1762 aa23.9■■□□□ 1.42
TSPAN3-208ENST00000560514 CEMIPQ8WUJ3 1361 aa23.9■■□□□ 1.42
TSPAN3-208ENST00000560514 FZD9O00144 591 aa23.89■■□□□ 1.41
TSPAN3-208ENST00000560514 SNRPA1P09661 255 aaKnown RBP23.89■■□□□ 1.41
TSPAN3-208ENST00000560514 LMOD1P29536 600 aaPredicted RBP23.89■■□□□ 1.41
TSPAN3-208ENST00000560514 OLFM4Q6UX06 510 aa23.89■■□□□ 1.41
TSPAN3-208ENST00000560514 PAXIP1Q6ZW49 1069 aaPredicted RBP23.89■■□□□ 1.41
TSPAN3-208ENST00000560514 KLRG2A4D1S0 409 aaPredicted RBP23.88■■□□□ 1.41
TSPAN3-208ENST00000560514 EIF6P56537 245 aaKnown RBP23.88■■□□□ 1.41
TSPAN3-208ENST00000560514 CNGB1Q14028 1251 aaPredicted RBP23.88■■□□□ 1.41
TSPAN3-208ENST00000560514 FAM161AQ3B820 660 aa23.88■■□□□ 1.41
TSPAN3-208ENST00000560514 RTF1Q92541 710 aaKnown RBP23.87■■□□□ 1.41
TSPAN3-208ENST00000560514 GJA3Q9Y6H8 435 aa23.87■■□□□ 1.41
TSPAN3-208ENST00000560514 KIF7Q2M1P5 1343 aa23.86■■□□□ 1.41
TSPAN3-208ENST00000560514 RGL2O15211 777 aa23.86■■□□□ 1.41
TSPAN3-208ENST00000560514 SLC34A2O95436 690 aa23.86■■□□□ 1.41
TSPAN3-208ENST00000560514 ECE1P42892 770 aa23.86■■□□□ 1.41
TSPAN3-208ENST00000560514 DDX21Q9NR30 783 aaKnown RBP eCLIP23.85■■□□□ 1.41
TSPAN3-208ENST00000560514 COL3A1P02461 1466 aaPredicted RBP23.84■■□□□ 1.41
TSPAN3-208ENST00000560514 PRAMEF22A3QJZ6 481 aa23.84■■□□□ 1.41
TSPAN3-208ENST00000560514 PRKAR2BP31323 418 aa23.84■■□□□ 1.41
TSPAN3-208ENST00000560514 GRM1Q13255 1194 aa23.84■■□□□ 1.41
TSPAN3-208ENST00000560514 PSMD1Q99460 953 aa23.84■■□□□ 1.41
TSPAN3-208ENST00000560514 CCDC85CA6NKD9 419 aa23.83■■□□□ 1.41
TSPAN3-208ENST00000560514 PER1O15534 1290 aaPredicted RBP23.83■■□□□ 1.41
TSPAN3-208ENST00000560514 CC2D2BQ6DHV5 1058 aa23.83■■□□□ 1.41
TSPAN3-208ENST00000560514 CAPNS2Q96L46 248 aa23.83■■□□□ 1.41
TSPAN3-208ENST00000560514 CFAP53Q96M91 514 aa23.82■■□□□ 1.4
TSPAN3-208ENST00000560514 NYXQ9GZU5 481 aa23.82■■□□□ 1.4
TSPAN3-208ENST00000560514 PHACTR3Q96KR7 559 aa23.81■■□□□ 1.4
TSPAN3-208ENST00000560514 MLLT1Q03111 559 aaPredicted RBP23.8■■□□□ 1.4
TSPAN3-208ENST00000560514 RPGRQ92834 1020 aaKnown RBP23.8■■□□□ 1.4
TSPAN3-208ENST00000560514 GPR101Q96P66 508 aaPredicted RBP23.8■■□□□ 1.4
TSPAN3-208ENST00000560514 TRPM7Q96QT4 1865 aa23.79■■□□□ 1.4
TSPAN3-208ENST00000560514 NBPF26B4DH59 902 aa23.79■■□□□ 1.4
TSPAN3-208ENST00000560514 GRIPAP1Q4V328 841 aa23.79■■□□□ 1.4
TSPAN3-208ENST00000560514 NBPF10Q6P3W6 841 aaKnown RBP23.79■■□□□ 1.4
TSPAN3-208ENST00000560514 LARGE2Q8N3Y3 721 aa23.79■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms