RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 NOM1Q5C9Z4 860 aaKnown RBP6.86□□□□□ -1.31
LDLR-209ENST00000558528 ZSCAN29Q8IWY8 852 aaPredicted RBP6.86□□□□□ -1.31
LDLR-209ENST00000558528 HLA-CQ95604 372 aa6.86□□□□□ -1.31
LDLR-209ENST00000558528 SPATA32Q96LK8 384 aa6.86□□□□□ -1.31
LDLR-209ENST00000558528 FKBPLQ9UIM3 349 aa6.86□□□□□ -1.31
LDLR-209ENST00000558528 GPSM3Q9Y4H4 160 aa6.86□□□□□ -1.31
LDLR-209ENST00000558528 KIAA1210Q9ULL0 1709 aa6.86□□□□□ -1.31
LDLR-209ENST00000558528 KTN1Q86UP2 1357 aaKnown RBP6.85□□□□□ -1.31
LDLR-209ENST00000558528 PNPLA6Q8IY17 1366 aa6.85□□□□□ -1.31
LDLR-209ENST00000558528 C3orf80F5H4A9 247 aa6.85□□□□□ -1.31
LDLR-209ENST00000558528 EML3Q32P44 896 aa6.85□□□□□ -1.31
LDLR-209ENST00000558528 LYPD8Q6UX82 237 aa6.85□□□□□ -1.31
LDLR-209ENST00000558528 STK26Q9P289 416 aa6.85□□□□□ -1.31
LDLR-209ENST00000558528 TRPM1Q7Z4N2 1603 aa6.85□□□□□ -1.31
LDLR-209ENST00000558528 YTHDC2Q9H6S0 1430 aaKnown RBP6.84□□□□□ -1.31
LDLR-209ENST00000558528 NINLQ9Y2I6 1382 aa6.84□□□□□ -1.31
LDLR-209ENST00000558528 C11orf95C9JLR9 678 aaPredicted RBP6.84□□□□□ -1.31
LDLR-209ENST00000558528 PER1O15534 1290 aaPredicted RBP6.84□□□□□ -1.31
LDLR-209ENST00000558528 FGD1P98174 961 aa6.84□□□□□ -1.31
LDLR-209ENST00000558528 FUT2Q10981 343 aa6.84□□□□□ -1.31
LDLR-209ENST00000558528 NCOA4Q13772 614 aa6.84□□□□□ -1.31
LDLR-209ENST00000558528 RALBP1Q15311 655 aa6.84□□□□□ -1.31
LDLR-209ENST00000558528 SWT1Q5T5J6 900 aaKnown RBP6.84□□□□□ -1.31
LDLR-209ENST00000558528 BRINP3Q76B58 766 aa6.84□□□□□ -1.31
LDLR-209ENST00000558528 FBXO33Q7Z6M2 555 aa6.84□□□□□ -1.31
LDLR-209ENST00000558528 ASB16Q96NS5 453 aa6.84□□□□□ -1.31
LDLR-209ENST00000558528 DCBLD2Q96PD2 775 aa6.84□□□□□ -1.31
LDLR-209ENST00000558528 PRAM1Q96QH2 718 aa6.84□□□□□ -1.31
LDLR-209ENST00000558528 USP21Q9UK80 565 aa6.84□□□□□ -1.31
LDLR-209ENST00000558528 KNSTRNQ9Y448 316 aa6.84□□□□□ -1.31
LDLR-209ENST00000558528 RBM19Q9Y4C8 960 aaKnown RBP6.84□□□□□ -1.31
LDLR-209ENST00000558528 LARGE2Q8N3Y3 721 aa6.83□□□□□ -1.32
LDLR-209ENST00000558528 FAM174AQ8TBP5 190 aa6.83□□□□□ -1.32
LDLR-209ENST00000558528 GPKOWQ92917 476 aaPredicted RBP eCLIP6.83□□□□□ -1.32
LDLR-209ENST00000558528 LRRC59Q96AG4 307 aaKnown RBP6.83□□□□□ -1.32
LDLR-209ENST00000558528 SLC26A8Q96RN1 970 aa6.83□□□□□ -1.32
LDLR-209ENST00000558528 DCTN4Q9UJW0 460 aa6.83□□□□□ -1.32
LDLR-209ENST00000558528 SIPA1L2Q9P2F8 1722 aaPredicted RBP6.83□□□□□ -1.32
LDLR-209ENST00000558528 ASXL1Q8IXJ9 1541 aa6.82□□□□□ -1.32
LDLR-209ENST00000558528 SMAPO00193 183 aa6.82□□□□□ -1.32
LDLR-209ENST00000558528 ICMTO60725 284 aa6.82□□□□□ -1.32
LDLR-209ENST00000558528 KMT5BQ4FZB7 885 aa6.82□□□□□ -1.32
LDLR-209ENST00000558528 NAALADL2Q58DX5 795 aa6.82□□□□□ -1.32
LDLR-209ENST00000558528 ARSIQ5FYB1 569 aa6.82□□□□□ -1.32
LDLR-209ENST00000558528 GLYCTKQ8IVS8 523 aa6.82□□□□□ -1.32
LDLR-209ENST00000558528 DEPDC4Q8N2C3 294 aa6.82□□□□□ -1.32
LDLR-209ENST00000558528 PLPP7Q8NBV4 271 aa6.82□□□□□ -1.32
LDLR-209ENST00000558528 ARMC2Q8NEN0 867 aa6.82□□□□□ -1.32
LDLR-209ENST00000558528 PANK3Q9H999 370 aa6.82□□□□□ -1.32
LDLR-209ENST00000558528 TERF2IPQ9NYB0 399 aa6.82□□□□□ -1.32
LDLR-209ENST00000558528 METRNQ9UJH8 293 aa6.82□□□□□ -1.32
LDLR-209ENST00000558528 CHD2O14647 1828 aaKnown RBP6.82□□□□□ -1.32
LDLR-209ENST00000558528 ADGRB1O14514 1584 aa6.82□□□□□ -1.32
LDLR-209ENST00000558528 DLC1Q96QB1 1528 aa6.81□□□□□ -1.32
LDLR-209ENST00000558528 POTEFA5A3E0 1075 aa6.81□□□□□ -1.32
LDLR-209ENST00000558528 H3BRB1 525 aa6.81□□□□□ -1.32
LDLR-209ENST00000558528 HAX1O00165 279 aa6.81□□□□□ -1.32
LDLR-209ENST00000558528 PPM1GO15355 546 aaPredicted RBP6.81□□□□□ -1.32
LDLR-209ENST00000558528 ADAMTS2O95450 1211 aa6.81□□□□□ -1.32
LDLR-209ENST00000558528 RECKO95980 971 aa6.81□□□□□ -1.32
LDLR-209ENST00000558528 CFHP08603 1231 aa6.81□□□□□ -1.32
LDLR-209ENST00000558528 MAPK1P28482 360 aa6.81□□□□□ -1.32
LDLR-209ENST00000558528 DPYDQ12882 1025 aa6.81□□□□□ -1.32
LDLR-209ENST00000558528 SF3B2Q13435 895 aaKnown RBP6.81□□□□□ -1.32
LDLR-209ENST00000558528 R3HDM1Q15032 1099 aaKnown RBP6.81□□□□□ -1.32
LDLR-209ENST00000558528 TAS1R3Q7RTX0 852 aa6.81□□□□□ -1.32
LDLR-209ENST00000558528 HDGFL2Q7Z4V5 671 aaPredicted RBP6.81□□□□□ -1.32
LDLR-209ENST00000558528 OGFOD1Q8N543 542 aa6.81□□□□□ -1.32
LDLR-209ENST00000558528 TUT1Q9H6E5 874 aaKnown RBP6.81□□□□□ -1.32
LDLR-209ENST00000558528 DNAAF2Q9NVR5 837 aaKnown RBP6.81□□□□□ -1.32
LDLR-209ENST00000558528 CEP126Q9P2H0 1117 aa6.81□□□□□ -1.32
LDLR-209ENST00000558528 LHX6Q9UPM6 363 aa6.81□□□□□ -1.32
LDLR-209ENST00000558528 NOD1Q9Y239 953 aa6.81□□□□□ -1.32
LDLR-209ENST00000558528 PPLO60437 1756 aa6.81□□□□□ -1.32
LDLR-209ENST00000558528 TECPR2O15040 1411 aa6.81□□□□□ -1.32
LDLR-209ENST00000558528 PTCH1Q13635 1447 aa6.81□□□□□ -1.32
LDLR-209ENST00000558528 WASLO00401 505 aaPredicted RBP6.8□□□□□ -1.32
LDLR-209ENST00000558528 C21orf2O43822 256 aa6.8□□□□□ -1.32
LDLR-209ENST00000558528 PTK2Q05397 1052 aa6.8□□□□□ -1.32
LDLR-209ENST00000558528 GPR153Q6NV75 609 aa6.8□□□□□ -1.32
LDLR-209ENST00000558528 ADAMTS13Q76LX8 1427 aa6.8□□□□□ -1.32
LDLR-209ENST00000558528 SIX5Q8N196 739 aa6.8□□□□□ -1.32
LDLR-209ENST00000558528 TMC1Q8TDI8 760 aa6.8□□□□□ -1.32
LDLR-209ENST00000558528 CDK19Q9BWU1 502 aa6.8□□□□□ -1.32
LDLR-209ENST00000558528 C19orf44Q9H6X5 657 aa6.8□□□□□ -1.32
LDLR-209ENST00000558528 PRKRIP1Q9H875 184 aaPredicted RBP6.8□□□□□ -1.32
LDLR-209ENST00000558528 CXXC1Q9P0U4 656 aaPredicted RBP6.8□□□□□ -1.32
LDLR-209ENST00000558528 IFT172Q9UG01 1749 aa6.8□□□□□ -1.32
LDLR-209ENST00000558528 METP08581 1390 aa6.8□□□□□ -1.32
LDLR-209ENST00000558528 NPC1L1Q9UHC9 1359 aa6.8□□□□□ -1.32
LDLR-209ENST00000558528 BRWD3Q6RI45 1802 aa6.79□□□□□ -1.32
LDLR-209ENST00000558528 ABL1P00519 1130 aa6.79□□□□□ -1.32
LDLR-209ENST00000558528 ATF3P18847 181 aa6.79□□□□□ -1.32
LDLR-209ENST00000558528 EAPPQ56P03 285 aaPredicted RBP6.79□□□□□ -1.32
LDLR-209ENST00000558528 WAPLQ7Z5K2 1190 aa6.79□□□□□ -1.32
LDLR-209ENST00000558528 KIAA1468Q9P260 1216 aa6.79□□□□□ -1.32
LDLR-209ENST00000558528 PCDH10Q9P2E7 1040 aa6.79□□□□□ -1.32
LDLR-209ENST00000558528 CGNL1Q0VF96 1302 aa6.78□□□□□ -1.32
LDLR-209ENST00000558528 GLI3P10071 1580 aa6.78□□□□□ -1.32
LDLR-209ENST00000558528 CAMTA1Q9Y6Y1 1673 aa6.78□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms