RNA–Protein interactions for RNA: ENST00000557507.1

CCDC88C-214, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 429 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-214ENST00000557507 IL6STP40189 918 aaPredicted RBP11.08□□□□□ -0.64
CCDC88C-214ENST00000557507 STYK1Q6J9G0 422 aa11.08□□□□□ -0.64
CCDC88C-214ENST00000557507 IL17REQ8NFR9 667 aa11.08□□□□□ -0.64
CCDC88C-214ENST00000557507 CNKSR1Q969H4 720 aa11.08□□□□□ -0.64
CCDC88C-214ENST00000557507 L3MBTL3Q96JM7 780 aaPredicted RBP11.08□□□□□ -0.64
CCDC88C-214ENST00000557507 TAF1DQ9H5J8 278 aaPredicted RBP11.08□□□□□ -0.64
CCDC88C-214ENST00000557507 CLSPNQ9HAW4 1339 aa11.08□□□□□ -0.64
CCDC88C-214ENST00000557507 COL4A5P29400 1685 aa11.08□□□□□ -0.64
CCDC88C-214ENST00000557507 DIAPH1O60610 1272 aaKnown RBP11.07□□□□□ -0.64
CCDC88C-214ENST00000557507 LDHDQ86WU2 507 aa11.07□□□□□ -0.64
CCDC88C-214ENST00000557507 MASTLQ96GX5 879 aa11.07□□□□□ -0.64
CCDC88C-214ENST00000557507 KDM3BQ7LBC6 1761 aa11.07□□□□□ -0.64
CCDC88C-214ENST00000557507 CEMIPQ8WUJ3 1361 aa11.06□□□□□ -0.64
CCDC88C-214ENST00000557507 IQCA1LA6NCM1 817 aa11.06□□□□□ -0.64
CCDC88C-214ENST00000557507 KCNQ3O43525 872 aa11.06□□□□□ -0.64
CCDC88C-214ENST00000557507 ITGBL1O95965 494 aaPredicted RBP11.06□□□□□ -0.64
CCDC88C-214ENST00000557507 ZEB1P37275 1124 aaPredicted RBP11.06□□□□□ -0.64
CCDC88C-214ENST00000557507 PIP4K2AP48426 406 aaPredicted RBP11.06□□□□□ -0.64
CCDC88C-214ENST00000557507 VEGFBP49765 207 aa11.06□□□□□ -0.64
CCDC88C-214ENST00000557507 ST5P78524 1137 aa11.06□□□□□ -0.64
CCDC88C-214ENST00000557507 TEFQ10587 303 aa11.06□□□□□ -0.64
CCDC88C-214ENST00000557507 C7orf43Q8WVR3 580 aa11.06□□□□□ -0.64
CCDC88C-214ENST00000557507 SETDB2Q96T68 719 aa11.06□□□□□ -0.64
CCDC88C-214ENST00000557507 PRDM10Q9NQV6 1147 aa11.06□□□□□ -0.64
CCDC88C-214ENST00000557507 SNED1Q8TER0 1413 aa11.06□□□□□ -0.64
CCDC88C-214ENST00000557507 CASP8AP2Q9UKL3 1982 aa11.06□□□□□ -0.64
CCDC88C-214ENST00000557507 KIF7Q2M1P5 1343 aa11.06□□□□□ -0.64
CCDC88C-214ENST00000557507 GNAT3A8MTJ3 354 aa11.05□□□□□ -0.64
CCDC88C-214ENST00000557507 NPHP1O15259 732 aa11.05□□□□□ -0.64
CCDC88C-214ENST00000557507 CCDC93Q567U6 631 aa11.05□□□□□ -0.64
CCDC88C-214ENST00000557507 SOGA3Q5TF21 947 aa11.05□□□□□ -0.64
CCDC88C-214ENST00000557507 OLFM4Q6UX06 510 aa11.05□□□□□ -0.64
CCDC88C-214ENST00000557507 DZIP3Q86Y13 1208 aaKnown RBP11.05□□□□□ -0.64
CCDC88C-214ENST00000557507 FMNL2Q96PY5 1086 aa11.05□□□□□ -0.64
CCDC88C-214ENST00000557507 TEX13AQ9BXU3 409 aaPredicted RBP11.05□□□□□ -0.64
CCDC88C-214ENST00000557507 LAMB2P55268 1798 aa11.05□□□□□ -0.64
CCDC88C-214ENST00000557507 PDE4DIPQ5VU43 2346 aa11.04□□□□□ -0.64
CCDC88C-214ENST00000557507 PRAMEF22A3QJZ6 481 aa11.04□□□□□ -0.64
CCDC88C-214ENST00000557507 TMEM88BA6NKF7 163 aa11.04□□□□□ -0.64
CCDC88C-214ENST00000557507 CTCFP49711 727 aaPredicted RBP11.04□□□□□ -0.64
CCDC88C-214ENST00000557507 EAPPQ56P03 285 aaPredicted RBP11.04□□□□□ -0.64
CCDC88C-214ENST00000557507 CC2D1BQ5T0F9 858 aaKnown RBP11.04□□□□□ -0.64
CCDC88C-214ENST00000557507 GAS2L2Q8NHY3 880 aa11.04□□□□□ -0.64
CCDC88C-214ENST00000557507 ZNF277Q9NRM2 450 aaPredicted RBP11.04□□□□□ -0.64
CCDC88C-214ENST00000557507 LBX1P52954 281 aa11.03□□□□□ -0.64
CCDC88C-214ENST00000557507 FKBP4Q02790 459 aaKnown RBP eCLIP11.03□□□□□ -0.64
CCDC88C-214ENST00000557507 NBPF5PQ86XG9 351 aaPredicted RBP11.03□□□□□ -0.64
CCDC88C-214ENST00000557507 AIDAQ96BJ3 306 aa11.03□□□□□ -0.64
CCDC88C-214ENST00000557507 WBP1LQ9NX94 342 aa11.03□□□□□ -0.64
CCDC88C-214ENST00000557507 RNF123Q5XPI4 1314 aa11.03□□□□□ -0.64
CCDC88C-214ENST00000557507 ANKRD36CQ5JPF3 1778 aa11.03□□□□□ -0.64
CCDC88C-214ENST00000557507 U2SURPO15042 1029 aaKnown RBP11.02□□□□□ -0.65
CCDC88C-214ENST00000557507 PER1O15534 1290 aaPredicted RBP11.02□□□□□ -0.65
CCDC88C-214ENST00000557507 HSPA8P11142 646 aaKnown RBP11.02□□□□□ -0.65
CCDC88C-214ENST00000557507 NPR1P16066 1061 aa11.02□□□□□ -0.65
CCDC88C-214ENST00000557507 EPHX2P34913 555 aa11.02□□□□□ -0.65
CCDC88C-214ENST00000557507 MAP1SQ66K74 1059 aaPredicted RBP11.02□□□□□ -0.65
CCDC88C-214ENST00000557507 HACL1Q9UJ83 578 aa11.02□□□□□ -0.65
CCDC88C-214ENST00000557507 USP16Q9Y5T5 823 aa11.02□□□□□ -0.65
CCDC88C-214ENST00000557507 TAF1P21675 1872 aa11.02□□□□□ -0.65
CCDC88C-214ENST00000557507 ABCC12Q96J65 1359 aa11.02□□□□□ -0.65
CCDC88C-214ENST00000557507 POLR2AP24928 1970 aaKnown RBP11.01□□□□□ -0.65
CCDC88C-214ENST00000557507 KLRG2A4D1S0 409 aaPredicted RBP11.01□□□□□ -0.65
CCDC88C-214ENST00000557507 RASSF10A6NK89 507 aa11.01□□□□□ -0.65
CCDC88C-214ENST00000557507 BTBD11A6QL63 1104 aa11.01□□□□□ -0.65
CCDC88C-214ENST00000557507 NPM2Q86SE8 214 aaKnown RBP11.01□□□□□ -0.65
CCDC88C-214ENST00000557507 PHACTR3Q96KR7 559 aa11.01□□□□□ -0.65
CCDC88C-214ENST00000557507 CLEC11AQ9Y240 323 aa11.01□□□□□ -0.65
CCDC88C-214ENST00000557507 NBPF26B4DH59 902 aa11□□□□□ -0.65
CCDC88C-214ENST00000557507 FZD9O00144 591 aa11□□□□□ -0.65
CCDC88C-214ENST00000557507 IARSP41252 1262 aaKnown RBP11□□□□□ -0.65
CCDC88C-214ENST00000557507 NBPF10Q6P3W6 841 aaKnown RBP11□□□□□ -0.65
CCDC88C-214ENST00000557507 CLEC4GQ6UXB4 293 aa11□□□□□ -0.65
CCDC88C-214ENST00000557507 NBPF15Q8N660 670 aa11□□□□□ -0.65
CCDC88C-214ENST00000557507 ZNF652Q9Y2D9 606 aa11□□□□□ -0.65
CCDC88C-214ENST00000557507 FAM177BA6PVY3 158 aa10.99□□□□□ -0.65
CCDC88C-214ENST00000557507 PRKAR2BP31323 418 aa10.99□□□□□ -0.65
CCDC88C-214ENST00000557507 CNGB1Q14028 1251 aaPredicted RBP10.99□□□□□ -0.65
CCDC88C-214ENST00000557507 DEFB115Q30KQ5 88 aa10.99□□□□□ -0.65
CCDC88C-214ENST00000557507 SLC51AQ86UW1 340 aa10.99□□□□□ -0.65
CCDC88C-214ENST00000557507 RTKN2Q8IZC4 609 aa10.99□□□□□ -0.65
CCDC88C-214ENST00000557507 CNTROBQ8N137 903 aa10.99□□□□□ -0.65
CCDC88C-214ENST00000557507 ABHD8Q96I13 439 aa10.99□□□□□ -0.65
CCDC88C-214ENST00000557507 RSPH6AQ9H0K4 717 aa10.99□□□□□ -0.65
CCDC88C-214ENST00000557507 NIP7Q9Y221 180 aaKnown RBP eCLIP10.99□□□□□ -0.65
CCDC88C-214ENST00000557507 WDR33Q9C0J8 1336 aaKnown RBP10.99□□□□□ -0.65
CCDC88C-214ENST00000557507 NPC1L1Q9UHC9 1359 aa10.99□□□□□ -0.65
CCDC88C-214ENST00000557507 SLC34A2O95436 690 aa10.98□□□□□ -0.65
CCDC88C-214ENST00000557507 FMR1Q06787 632 aaKnown RBP eCLIP10.98□□□□□ -0.65
CCDC88C-214ENST00000557507 FAM161AQ3B820 660 aa10.98□□□□□ -0.65
CCDC88C-214ENST00000557507 GPC2Q8N158 579 aa10.98□□□□□ -0.65
CCDC88C-214ENST00000557507 SYNE4Q8N205 404 aa10.98□□□□□ -0.65
CCDC88C-214ENST00000557507 ABT1Q9ULW3 272 aaKnown RBP10.98□□□□□ -0.65
CCDC88C-214ENST00000557507 RIC1Q4ADV7 1423 aa10.98□□□□□ -0.65
CCDC88C-214ENST00000557507 SNRPA1P09661 255 aaKnown RBP10.97□□□□□ -0.65
CCDC88C-214ENST00000557507 HLFQ16534 295 aa10.97□□□□□ -0.65
CCDC88C-214ENST00000557507 TPTE2Q6XPS3 522 aa10.97□□□□□ -0.65
CCDC88C-214ENST00000557507 MCM10Q7L590 875 aa10.97□□□□□ -0.65
CCDC88C-214ENST00000557507 PNMA8AQ86V59 439 aaPredicted RBP10.97□□□□□ -0.65
CCDC88C-214ENST00000557507 AKAP11Q9UKA4 1901 aa10.96□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms