RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-223ENST00000556689 POTEIP0CG38 1075 aa16.99■□□□□ 0.31
SHMT2-223ENST00000556689 POTEJP0CG39 1038 aa16.99■□□□□ 0.31
SHMT2-223ENST00000556689 NBPF5PQ86XG9 351 aaPredicted RBP16.99■□□□□ 0.31
SHMT2-223ENST00000556689 UBR2Q8IWV8 1755 aa16.98■□□□□ 0.31
SHMT2-223ENST00000556689 C7orf43Q8WVR3 580 aa16.98■□□□□ 0.31
SHMT2-223ENST00000556689 PHACTR3Q96KR7 559 aa16.98■□□□□ 0.31
SHMT2-223ENST00000556689 CCDC88AQ3V6T2 1871 aa16.98■□□□□ 0.31
SHMT2-223ENST00000556689 CEMIPQ8WUJ3 1361 aa16.98■□□□□ 0.31
SHMT2-223ENST00000556689 NPR1P16066 1061 aa16.97■□□□□ 0.31
SHMT2-223ENST00000556689 CCDC93Q567U6 631 aa16.97■□□□□ 0.31
SHMT2-223ENST00000556689 TPTE2Q6XPS3 522 aa16.97■□□□□ 0.31
SHMT2-223ENST00000556689 LDHDQ86WU2 507 aa16.97■□□□□ 0.31
SHMT2-223ENST00000556689 ZNF652Q9Y2D9 606 aa16.97■□□□□ 0.31
SHMT2-223ENST00000556689 TIAM2Q8IVF5 1701 aa16.96■□□□□ 0.31
SHMT2-223ENST00000556689 SNRPA1P09661 255 aaKnown RBP16.96■□□□□ 0.31
SHMT2-223ENST00000556689 PRKAR2BP31323 418 aa16.96■□□□□ 0.31
SHMT2-223ENST00000556689 PIP4K2AP48426 406 aaPredicted RBP16.96■□□□□ 0.31
SHMT2-223ENST00000556689 L3MBTL3Q96JM7 780 aaPredicted RBP16.96■□□□□ 0.31
SHMT2-223ENST00000556689 TAF1DQ9H5J8 278 aaPredicted RBP16.96■□□□□ 0.31
SHMT2-223ENST00000556689 NPC1L1Q9UHC9 1359 aa16.96■□□□□ 0.31
SHMT2-223ENST00000556689 ANKRD31Q8N7Z5 1873 aa16.95■□□□□ 0.3
SHMT2-223ENST00000556689 KLRG2A4D1S0 409 aaPredicted RBP16.95■□□□□ 0.3
SHMT2-223ENST00000556689 FKBP4Q02790 459 aaKnown RBP eCLIP16.95■□□□□ 0.3
SHMT2-223ENST00000556689 RTF1Q92541 710 aaKnown RBP16.95■□□□□ 0.3
SHMT2-223ENST00000556689 CFAP53Q96M91 514 aa16.95■□□□□ 0.3
SHMT2-223ENST00000556689 VIRMAQ69YN4 1812 aaKnown RBP16.95■□□□□ 0.3
SHMT2-223ENST00000556689 FER1L6Q2WGJ9 1857 aa16.95■□□□□ 0.3
SHMT2-223ENST00000556689 PRAMEF22A3QJZ6 481 aa16.94■□□□□ 0.3
SHMT2-223ENST00000556689 RTKN2Q8IZC4 609 aa16.94■□□□□ 0.3
SHMT2-223ENST00000556689 RSPH6AQ9H0K4 717 aa16.94■□□□□ 0.3
SHMT2-223ENST00000556689 NUDCQ9Y266 331 aa16.94■□□□□ 0.3
SHMT2-223ENST00000556689 PASKQ96RG2 1323 aa16.94■□□□□ 0.3
SHMT2-223ENST00000556689 COL3A1P02461 1466 aaPredicted RBP16.93■□□□□ 0.3
SHMT2-223ENST00000556689 CNTNAP1P78357 1384 aa16.93■□□□□ 0.3
SHMT2-223ENST00000556689 TMEM88BA6NKF7 163 aa16.93■□□□□ 0.3
SHMT2-223ENST00000556689 ZNF277Q9NRM2 450 aaPredicted RBP16.93■□□□□ 0.3
SHMT2-223ENST00000556689 NIP7Q9Y221 180 aaKnown RBP eCLIP16.93■□□□□ 0.3
SHMT2-223ENST00000556689 CLEC11AQ9Y240 323 aa16.93■□□□□ 0.3
SHMT2-223ENST00000556689 SLX4Q8IY92 1834 aa16.93■□□□□ 0.3
SHMT2-223ENST00000556689 SCN7AQ01118 1682 aa16.92■□□□□ 0.3
SHMT2-223ENST00000556689 RGL2O15211 777 aa16.92■□□□□ 0.3
SHMT2-223ENST00000556689 FOXN1O15353 648 aa16.92■□□□□ 0.3
SHMT2-223ENST00000556689 ITGBL1O95965 494 aaPredicted RBP16.92■□□□□ 0.3
SHMT2-223ENST00000556689 ALDH1B1P30837 517 aa16.92■□□□□ 0.3
SHMT2-223ENST00000556689 EAPPQ56P03 285 aaPredicted RBP16.92■□□□□ 0.3
SHMT2-223ENST00000556689 HACL1Q9UJ83 578 aa16.92■□□□□ 0.3
SHMT2-223ENST00000556689 DICER1Q9UPY3 1922 aaKnown RBP16.92■□□□□ 0.3
SHMT2-223ENST00000556689 COL11A2P13942 1736 aaPredicted RBP16.91■□□□□ 0.3
SHMT2-223ENST00000556689 FAM177BA6PVY3 158 aa16.91■□□□□ 0.3
SHMT2-223ENST00000556689 GTF2E1P29083 439 aaPredicted RBP16.91■□□□□ 0.3
SHMT2-223ENST00000556689 VEGFBP49765 207 aa16.91■□□□□ 0.3
SHMT2-223ENST00000556689 MCM10Q7L590 875 aa16.91■□□□□ 0.3
SHMT2-223ENST00000556689 PRDM10Q9NQV6 1147 aa16.91■□□□□ 0.3
SHMT2-223ENST00000556689 NBPF26B4DH59 902 aa16.9■□□□□ 0.3
SHMT2-223ENST00000556689 U2AF1L5P0DN76 240 aaPredicted RBP16.9■□□□□ 0.3
SHMT2-223ENST00000556689 EPHX2P34913 555 aa16.9■□□□□ 0.3
SHMT2-223ENST00000556689 U2AF1Q01081 240 aaKnown RBP eCLIP16.9■□□□□ 0.3
SHMT2-223ENST00000556689 NBPF10Q6P3W6 841 aaKnown RBP16.9■□□□□ 0.3
SHMT2-223ENST00000556689 OLFM4Q6UX06 510 aa16.9■□□□□ 0.3
SHMT2-223ENST00000556689 PNMA8AQ86V59 439 aaPredicted RBP16.9■□□□□ 0.3
SHMT2-223ENST00000556689 SYNE4Q8N205 404 aa16.9■□□□□ 0.3
SHMT2-223ENST00000556689 NBPF15Q8N660 670 aa16.9■□□□□ 0.3
SHMT2-223ENST00000556689 AIDAQ96BJ3 306 aa16.9■□□□□ 0.3
SHMT2-223ENST00000556689 CTCFP49711 727 aaPredicted RBP16.89■□□□□ 0.29
SHMT2-223ENST00000556689 ZNF541Q9H0D2 1346 aa16.89■□□□□ 0.29
SHMT2-223ENST00000556689 SIPA1L3O60292 1781 aaPredicted RBP16.88■□□□□ 0.29
SHMT2-223ENST00000556689 FZD9O00144 591 aa16.88■□□□□ 0.29
SHMT2-223ENST00000556689 HTATSF1O43719 755 aaKnown RBP16.88■□□□□ 0.29
SHMT2-223ENST00000556689 IARSP41252 1262 aaKnown RBP16.88■□□□□ 0.29
SHMT2-223ENST00000556689 DCTN1Q14203 1278 aa16.88■□□□□ 0.29
SHMT2-223ENST00000556689 TAF7Q15545 349 aaPredicted RBP16.88■□□□□ 0.29
SHMT2-223ENST00000556689 HLFQ16534 295 aa16.88■□□□□ 0.29
SHMT2-223ENST00000556689 CNTROBQ8N137 903 aa16.88■□□□□ 0.29
SHMT2-223ENST00000556689 GPC2Q8N158 579 aa16.87■□□□□ 0.29
SHMT2-223ENST00000556689 DEFB115Q30KQ5 88 aa16.86■□□□□ 0.29
SHMT2-223ENST00000556689 MAP1SQ66K74 1059 aaPredicted RBP16.86■□□□□ 0.29
SHMT2-223ENST00000556689 JDP2Q8WYK2 163 aa16.86■□□□□ 0.29
SHMT2-223ENST00000556689 NYXQ9GZU5 481 aa16.86■□□□□ 0.29
SHMT2-223ENST00000556689 WBP1LQ9NX94 342 aa16.86■□□□□ 0.29
SHMT2-223ENST00000556689 RNF123Q5XPI4 1314 aa16.86■□□□□ 0.29
SHMT2-223ENST00000556689 CC2D2BQ6DHV5 1058 aa16.85■□□□□ 0.29
SHMT2-223ENST00000556689 NGEFQ8N5V2 710 aa16.85■□□□□ 0.29
SHMT2-223ENST00000556689 PSMD1Q99460 953 aa16.85■□□□□ 0.29
SHMT2-223ENST00000556689 MIS18AQ9NYP9 233 aa16.85■□□□□ 0.29
SHMT2-223ENST00000556689 SCN4AP35499 1836 aa16.84■□□□□ 0.29
SHMT2-223ENST00000556689 RASSF10A6NK89 507 aa16.84■□□□□ 0.29
SHMT2-223ENST00000556689 ERVV-1B6SEH8 477 aa16.84■□□□□ 0.29
SHMT2-223ENST00000556689 EIF6P56537 245 aaKnown RBP16.84■□□□□ 0.29
SHMT2-223ENST00000556689 PPP2R1AP30153 589 aa16.83■□□□□ 0.28
SHMT2-223ENST00000556689 LBX1P52954 281 aa16.83■□□□□ 0.28
SHMT2-223ENST00000556689 CRY2Q49AN0 593 aa16.83■□□□□ 0.28
SHMT2-223ENST00000556689 BCORQ6W2J9 1755 aa16.83■□□□□ 0.28
SHMT2-223ENST00000556689 GJA3Q9Y6H8 435 aa16.83■□□□□ 0.28
SHMT2-223ENST00000556689 MAP2K1Q02750 393 aaPredicted RBP16.82■□□□□ 0.28
SHMT2-223ENST00000556689 GRIPAP1Q4V328 841 aa16.82■□□□□ 0.28
SHMT2-223ENST00000556689 NUTM1Q86Y26 1132 aa16.82■□□□□ 0.28
SHMT2-223ENST00000556689 RPGRQ92834 1020 aaKnown RBP16.82■□□□□ 0.28
SHMT2-223ENST00000556689 ABT1Q9ULW3 272 aaKnown RBP16.82■□□□□ 0.28
SHMT2-223ENST00000556689 ARFGEF2Q9Y6D5 1785 aa16.82■□□□□ 0.28
SHMT2-223ENST00000556689 WDR33Q9C0J8 1336 aaKnown RBP16.81■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 79.9 ms