RNA–Protein interactions for RNA: ENST00000556096.6

VPS33B-205, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 2

Gene VPS33B, Length 1,731 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-205ENST00000556096 NBPF7P0C2Y1 421 aaPredicted RBP18.27■□□□□ 0.52
VPS33B-205ENST00000556096 PRIM1P49642 420 aaKnown RBP18.27■□□□□ 0.52
VPS33B-205ENST00000556096 RIC3Q7Z5B4 369 aa18.27■□□□□ 0.52
VPS33B-205ENST00000556096 SBF2Q86WG5 1849 aa18.27■□□□□ 0.52
VPS33B-205ENST00000556096 BCL9O00512 1426 aa18.27■□□□□ 0.51
VPS33B-205ENST00000556096 UTYO14607 1347 aa18.26■□□□□ 0.51
VPS33B-205ENST00000556096 POLA2Q14181 598 aa18.26■□□□□ 0.51
VPS33B-205ENST00000556096 PLEKHM2Q8IWE5 1019 aa18.26■□□□□ 0.51
VPS33B-205ENST00000556096 PIGBQ92521 554 aa18.26■□□□□ 0.51
VPS33B-205ENST00000556096 SEC24BO95487 1268 aa18.26■□□□□ 0.51
VPS33B-205ENST00000556096 ANKRD13DQ6ZTN6 518 aa18.26■□□□□ 0.51
VPS33B-205ENST00000556096 NEXNQ0ZGT2 675 aa18.25■□□□□ 0.51
VPS33B-205ENST00000556096 VSIG10Q8N0Z9 540 aa18.25■□□□□ 0.51
VPS33B-205ENST00000556096 DDRGK1Q96HY6 314 aa18.25■□□□□ 0.51
VPS33B-205ENST00000556096 METTL22Q9BUU2 404 aaPredicted RBP18.25■□□□□ 0.51
VPS33B-205ENST00000556096 C9orf78Q9NZ63 289 aaPredicted RBP18.25■□□□□ 0.51
VPS33B-205ENST00000556096 MTX1Q13505 466 aa18.24■□□□□ 0.51
VPS33B-205ENST00000556096 CWF19L2Q2TBE0 894 aaKnown RBP18.23■□□□□ 0.51
VPS33B-205ENST00000556096 PPP1R42Q7Z4L9 355 aa18.23■□□□□ 0.51
VPS33B-205ENST00000556096 TEX13AQ9BXU3 409 aaPredicted RBP18.23■□□□□ 0.51
VPS33B-205ENST00000556096 UPF2Q9HAU5 1272 aaKnown RBP18.23■□□□□ 0.51
VPS33B-205ENST00000556096 NHSQ6T4R5 1651 aa18.23■□□□□ 0.51
VPS33B-205ENST00000556096 GRM8O00222 908 aa18.23■□□□□ 0.51
VPS33B-205ENST00000556096 PTCD1O75127 700 aaKnown RBP18.23■□□□□ 0.51
VPS33B-205ENST00000556096 IGKV5-2P06315 115 aa18.23■□□□□ 0.51
VPS33B-205ENST00000556096 NBPF26B4DH59 902 aa18.22■□□□□ 0.51
VPS33B-205ENST00000556096 SMARCA5O60264 1052 aaPredicted RBP18.22■□□□□ 0.51
VPS33B-205ENST00000556096 RAB11FIP3O75154 756 aa18.22■□□□□ 0.51
VPS33B-205ENST00000556096 NBPF14Q5TI25 921 aa18.22■□□□□ 0.51
VPS33B-205ENST00000556096 NBPF10Q6P3W6 841 aaKnown RBP18.22■□□□□ 0.51
VPS33B-205ENST00000556096 C16orf71Q8IYS4 520 aaPredicted RBP18.22■□□□□ 0.51
VPS33B-205ENST00000556096 NBPF15Q8N660 670 aa18.22■□□□□ 0.51
VPS33B-205ENST00000556096 PLBD2Q8NHP8 589 aa18.22■□□□□ 0.51
VPS33B-205ENST00000556096 UPF1Q92900 1129 aaKnown RBP eCLIP18.22■□□□□ 0.51
VPS33B-205ENST00000556096 LRRCC1Q9C099 1032 aa18.22■□□□□ 0.51
VPS33B-205ENST00000556096 ASAP1Q9ULH1 1129 aa18.22■□□□□ 0.51
VPS33B-205ENST00000556096 EXOC6BQ9Y2D4 811 aa18.22■□□□□ 0.51
VPS33B-205ENST00000556096 NEURL1BA8MQ27 555 aa18.21■□□□□ 0.51
VPS33B-205ENST00000556096 ATG3Q9NT62 314 aa18.21■□□□□ 0.51
VPS33B-205ENST00000556096 TNS1Q9HBL0 1735 aaKnown RBP18.21■□□□□ 0.51
VPS33B-205ENST00000556096 BTAF1O14981 1849 aa18.21■□□□□ 0.51
VPS33B-205ENST00000556096 SRGAP3O43295 1099 aa18.2■□□□□ 0.5
VPS33B-205ENST00000556096 TTC22Q5TAA0 569 aa18.2■□□□□ 0.5
VPS33B-205ENST00000556096 OSBPL3Q9H4L5 887 aa18.2■□□□□ 0.5
VPS33B-205ENST00000556096 APBB1O00213 710 aa18.2■□□□□ 0.5
VPS33B-205ENST00000556096 APBA3O96018 575 aa18.2■□□□□ 0.5
VPS33B-205ENST00000556096 PIP4K2AP48426 406 aaPredicted RBP18.2■□□□□ 0.5
VPS33B-205ENST00000556096 GCKRQ14397 625 aa18.2■□□□□ 0.5
VPS33B-205ENST00000556096 DEFB132Q7Z7B7 95 aa18.2■□□□□ 0.5
VPS33B-205ENST00000556096 MYD88Q99836 296 aa18.2■□□□□ 0.5
VPS33B-205ENST00000556096 BCL11BQ9C0K0 894 aaPredicted RBP18.2■□□□□ 0.5
VPS33B-205ENST00000556096 A1BGP04217 495 aa18.19■□□□□ 0.5
VPS33B-205ENST00000556096 HSP90AB4PQ58FF6 505 aa18.19■□□□□ 0.5
VPS33B-205ENST00000556096 NOP58Q9Y2X3 529 aaKnown RBP18.19■□□□□ 0.5
VPS33B-205ENST00000556096 TJP1Q07157 1748 aa18.19■□□□□ 0.5
VPS33B-205ENST00000556096 TBC1D32Q96NH3 1257 aa18.18■□□□□ 0.5
VPS33B-205ENST00000556096 SALL3Q9BXA9 1300 aa18.18■□□□□ 0.5
VPS33B-205ENST00000556096 SURF6O75683 361 aaKnown RBP18.18■□□□□ 0.5
VPS33B-205ENST00000556096 GSPT1P15170 499 aaKnown RBP18.18■□□□□ 0.5
VPS33B-205ENST00000556096 OTUD7AQ8TE49 926 aaPredicted RBP18.18■□□□□ 0.5
VPS33B-205ENST00000556096 ARFGEF2Q9Y6D5 1785 aa18.17■□□□□ 0.5
VPS33B-205ENST00000556096 COL15A1P39059 1388 aa18.17■□□□□ 0.5
VPS33B-205ENST00000556096 SF3B2Q13435 895 aaKnown RBP18.17■□□□□ 0.5
VPS33B-205ENST00000556096 SUCLG2Q96I99 432 aa18.17■□□□□ 0.5
VPS33B-205ENST00000556096 EIF5BO60841 1220 aaKnown RBP18.16■□□□□ 0.5
VPS33B-205ENST00000556096 PDE1AP54750 535 aa18.16■□□□□ 0.5
VPS33B-205ENST00000556096 EN1Q05925 392 aaPredicted RBP18.16■□□□□ 0.5
VPS33B-205ENST00000556096 KAZALD1Q96I82 304 aa18.16■□□□□ 0.5
VPS33B-205ENST00000556096 CDC45O75419 566 aa18.15■□□□□ 0.5
VPS33B-205ENST00000556096 STARD3NLO95772 234 aa18.15■□□□□ 0.5
VPS33B-205ENST00000556096 KIF1BPQ96EK5 621 aa18.15■□□□□ 0.5
VPS33B-205ENST00000556096 RBM42Q9BTD8 480 aaKnown RBP18.15■□□□□ 0.5
VPS33B-205ENST00000556096 KCNQ4P56696 695 aa18.15■□□□□ 0.5
VPS33B-205ENST00000556096 TTLL7Q6ZT98 887 aa18.15■□□□□ 0.5
VPS33B-205ENST00000556096 DNAJC10Q8IXB1 793 aa18.15■□□□□ 0.5
VPS33B-205ENST00000556096 STAP2Q9UGK3 403 aa18.15■□□□□ 0.5
VPS33B-205ENST00000556096 RHPN1Q8TCX5 695 aa18.14■□□□□ 0.49
VPS33B-205ENST00000556096 BICC1Q9H694 974 aaKnown RBP18.14■□□□□ 0.49
VPS33B-205ENST00000556096 CICQ96RK0 1608 aaPredicted RBP18.13■□□□□ 0.49
VPS33B-205ENST00000556096 NUP188Q5SRE5 1749 aa18.13■□□□□ 0.49
VPS33B-205ENST00000556096 MFAP1P55081 439 aaKnown RBP18.13■□□□□ 0.49
VPS33B-205ENST00000556096 EZH2Q15910 746 aaKnown RBP18.13■□□□□ 0.49
VPS33B-205ENST00000556096 TBC1D9Q6ZT07 1266 aa18.13■□□□□ 0.49
VPS33B-205ENST00000556096 SLC4A9Q96Q91 983 aa18.13■□□□□ 0.49
VPS33B-205ENST00000556096 AOX1Q06278 1338 aa18.13■□□□□ 0.49
VPS33B-205ENST00000556096 MX1P20591 662 aa18.12■□□□□ 0.49
VPS33B-205ENST00000556096 ERICH6Q7L0X2 663 aa18.12■□□□□ 0.49
VPS33B-205ENST00000556096 C22orf23Q9BZE7 217 aa18.12■□□□□ 0.49
VPS33B-205ENST00000556096 PALLDQ8WX93 1383 aa18.12■□□□□ 0.49
VPS33B-205ENST00000556096 ERC1Q8IUD2 1116 aa18.12■□□□□ 0.49
VPS33B-205ENST00000556096 AFDNP55196 1824 aaKnown RBP18.11■□□□□ 0.49
VPS33B-205ENST00000556096 ZNF831Q5JPB2 1677 aa18.11■□□□□ 0.49
VPS33B-205ENST00000556096 LY75O60449 1722 aa18.11■□□□□ 0.49
VPS33B-205ENST00000556096 SDSP20132 328 aa18.11■□□□□ 0.49
VPS33B-205ENST00000556096 BAG6P46379 1132 aa18.11■□□□□ 0.49
VPS33B-205ENST00000556096 CASP7P55210 303 aa18.11■□□□□ 0.49
VPS33B-205ENST00000556096 BCL11AQ9H165 835 aa18.11■□□□□ 0.49
VPS33B-205ENST00000556096 COL5A3P25940 1745 aaPredicted RBP18.1■□□□□ 0.49
VPS33B-205ENST00000556096 A0A087WZG4 1122 aa18.1■□□□□ 0.49
VPS33B-205ENST00000556096 ATP5J2-PTCD1G3V325 749 aa18.1■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms