RNA–Protein interactions for RNA: ENST00000555022.5

SYNE2-217, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 1 (best)

Gene SYNE2, Length 3,396 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-217	ENST00000555022	RGS12	O14924	1447 aa		10.53	□□□□□ -0.72
SYNE2-217	ENST00000555022	SLFN14	P0C7P3	912 aa		10.53	□□□□□ -0.72
SYNE2-217	ENST00000555022	HSPA4	P34932	840 aa		10.53	□□□□□ -0.72
SYNE2-217	ENST00000555022	NPAT	Q14207	1427 aa		10.53	□□□□□ -0.72
SYNE2-217	ENST00000555022	TPCN1	Q9ULQ1	816 aa		10.53	□□□□□ -0.72
SYNE2-217	ENST00000555022	SOS1	Q07889	1333 aa	Predicted RBP	10.53	□□□□□ -0.72
SYNE2-217	ENST00000555022	KRT85	P78386	507 aa		10.53	□□□□□ -0.72
SYNE2-217	ENST00000555022	PTPN14	Q15678	1187 aa		10.53	□□□□□ -0.72
SYNE2-217	ENST00000555022	KIF18A	Q8NI77	898 aa		10.53	□□□□□ -0.72
SYNE2-217	ENST00000555022	ADGRL1	O94910	1474 aa		10.53	□□□□□ -0.72
SYNE2-217	ENST00000555022	SEC31A	O94979	1220 aa	Known RBP	10.52	□□□□□ -0.72
SYNE2-217	ENST00000555022	NBPF7	P0C2Y1	421 aa	Predicted RBP	10.52	□□□□□ -0.72
SYNE2-217	ENST00000555022	ST3GAL1	Q11201	340 aa		10.52	□□□□□ -0.72
SYNE2-217	ENST00000555022	CHMP4C	Q96CF2	233 aa		10.52	□□□□□ -0.72
SYNE2-217	ENST00000555022	CCDC34	Q96HJ3	373 aa		10.52	□□□□□ -0.72
SYNE2-217	ENST00000555022	FUCA2	Q9BTY2	467 aa		10.52	□□□□□ -0.72
SYNE2-217	ENST00000555022	ZSWIM4	Q9H7M6	989 aa		10.52	□□□□□ -0.72
SYNE2-217	ENST00000555022	ZCCHC17	Q9NP64	241 aa	Known RBP	10.52	□□□□□ -0.72
SYNE2-217	ENST00000555022	FANCA	O15360	1455 aa		10.52	□□□□□ -0.72
SYNE2-217	ENST00000555022	RAD50	Q92878	1312 aa		10.52	□□□□□ -0.72
SYNE2-217	ENST00000555022	PIK3R4	Q99570	1358 aa		10.52	□□□□□ -0.72
SYNE2-217	ENST00000555022	SMTNL1	A8MU46	457 aa		10.52	□□□□□ -0.73
SYNE2-217	ENST00000555022	TRH	P20396	242 aa	Predicted RBP	10.52	□□□□□ -0.73
SYNE2-217	ENST00000555022	MTHFSD	Q2M296	383 aa	Known RBP	10.52	□□□□□ -0.73
SYNE2-217	ENST00000555022	CCDC69	A6NI79	296 aa		10.52	□□□□□ -0.73
SYNE2-217	ENST00000555022	SMC2	O95347	1197 aa		10.52	□□□□□ -0.73
SYNE2-217	ENST00000555022	IFIT2	P09913	472 aa	Known RBP	10.52	□□□□□ -0.73
SYNE2-217	ENST00000555022	GNL2	Q13823	731 aa	Known RBP	10.52	□□□□□ -0.73
SYNE2-217	ENST00000555022	HOMER1	Q86YM7	354 aa		10.52	□□□□□ -0.73
SYNE2-217	ENST00000555022	KRT222	Q8N1A0	295 aa		10.52	□□□□□ -0.73
SYNE2-217	ENST00000555022	KLHDC4	Q8TBB5	520 aa		10.52	□□□□□ -0.73
SYNE2-217	ENST00000555022	ATP6V1D	Q9Y5K8	247 aa		10.52	□□□□□ -0.73
SYNE2-217	ENST00000555022	CYP46A1	Q9Y6A2	500 aa		10.52	□□□□□ -0.73
SYNE2-217	ENST00000555022	YTHDC2	Q9H6S0	1430 aa	Known RBP	10.52	□□□□□ -0.73
SYNE2-217	ENST00000555022	SHROOM2	Q13796	1616 aa		10.51	□□□□□ -0.73
SYNE2-217	ENST00000555022	SGSM2	O43147	1006 aa		10.51	□□□□□ -0.73
SYNE2-217	ENST00000555022	SYT10	Q6XYQ8	523 aa		10.51	□□□□□ -0.73
SYNE2-217	ENST00000555022	RHPN1	Q8TCX5	695 aa		10.51	□□□□□ -0.73
SYNE2-217	ENST00000555022	BOLA2	Q9H3K6	86 aa		10.51	□□□□□ -0.73
SYNE2-217	ENST00000555022		H3BQV1	296 aa		10.51	□□□□□ -0.73
SYNE2-217	ENST00000555022	IFFO2	Q5TF58	517 aa		10.51	□□□□□ -0.73
SYNE2-217	ENST00000555022	LSG1	Q9H089	658 aa	Known RBP	10.51	□□□□□ -0.73
SYNE2-217	ENST00000555022	HYPK	Q9NX55	129 aa		10.51	□□□□□ -0.73
SYNE2-217	ENST00000555022	DDX41	Q9UJV9	622 aa	Known RBP	10.51	□□□□□ -0.73
SYNE2-217	ENST00000555022	ABCC1	P33527	1531 aa		10.51	□□□□□ -0.73
SYNE2-217	ENST00000555022	CHL1	O00533	1208 aa		10.51	□□□□□ -0.73
SYNE2-217	ENST00000555022	MYOM2	P54296	1465 aa		10.51	□□□□□ -0.73
SYNE2-217	ENST00000555022	ZFYVE16	Q7Z3T8	1539 aa		10.51	□□□□□ -0.73
SYNE2-217	ENST00000555022	ANKRD65	E5RJM6	399 aa		10.5	□□□□□ -0.73
SYNE2-217	ENST00000555022	CCT4	P50991	539 aa	Known RBP	10.5	□□□□□ -0.73
SYNE2-217	ENST00000555022	TERF2	Q15554	542 aa		10.5	□□□□□ -0.73
SYNE2-217	ENST00000555022	SLFNL1	Q499Z3	407 aa		10.5	□□□□□ -0.73
SYNE2-217	ENST00000555022	CHST3	Q7LGC8	479 aa		10.5	□□□□□ -0.73
SYNE2-217	ENST00000555022	AOPEP	Q8N6M6	819 aa		10.5	□□□□□ -0.73
SYNE2-217	ENST00000555022	CAMSAP1	Q5T5Y3	1602 aa		10.5	□□□□□ -0.73
SYNE2-217	ENST00000555022	BRPF1	P55201	1214 aa	Predicted RBP	10.5	□□□□□ -0.73
SYNE2-217	ENST00000555022	AIMP1	Q12904	312 aa	Known RBP	10.5	□□□□□ -0.73
SYNE2-217	ENST00000555022	CNTROB	Q8N137	903 aa		10.5	□□□□□ -0.73
SYNE2-217	ENST00000555022	RBM8A	Q9Y5S9	174 aa	Known RBP	10.5	□□□□□ -0.73
SYNE2-217	ENST00000555022	ATP7A	Q04656	1500 aa		10.5	□□□□□ -0.73
SYNE2-217	ENST00000555022	CTIF	O43310	598 aa	Known RBP	10.49	□□□□□ -0.73
SYNE2-217	ENST00000555022	CCT2	P78371	535 aa	Known RBP	10.49	□□□□□ -0.73
SYNE2-217	ENST00000555022	TAF7	Q15545	349 aa	Predicted RBP	10.49	□□□□□ -0.73
SYNE2-217	ENST00000555022	CCDC129	Q6ZRS4	1044 aa		10.49	□□□□□ -0.73
SYNE2-217	ENST00000555022	NUDT16	Q96DE0	195 aa	Known RBP	10.49	□□□□□ -0.73
SYNE2-217	ENST00000555022	SEC62	Q99442	399 aa	Known RBP	10.49	□□□□□ -0.73
SYNE2-217	ENST00000555022	ATP8B2	P98198	1209 aa		10.49	□□□□□ -0.73
SYNE2-217	ENST00000555022	OTUD7B	Q6GQQ9	843 aa		10.49	□□□□□ -0.73
SYNE2-217	ENST00000555022	TTC14	Q96N46	770 aa		10.49	□□□□□ -0.73
SYNE2-217	ENST00000555022	USP44	Q9H0E7	712 aa		10.49	□□□□□ -0.73
SYNE2-217	ENST00000555022	TNNT3	P45378	269 aa	Predicted RBP	10.49	□□□□□ -0.73
SYNE2-217	ENST00000555022	HDGFL1	Q5TGJ6	251 aa		10.49	□□□□□ -0.73
SYNE2-217	ENST00000555022	AACS	Q86V21	672 aa		10.49	□□□□□ -0.73
SYNE2-217	ENST00000555022	PGBD1	Q96JS3	809 aa		10.49	□□□□□ -0.73
SYNE2-217	ENST00000555022	ZCCHC11	Q5TAX3	1644 aa	Known RBP	10.49	□□□□□ -0.73
SYNE2-217	ENST00000555022	GNAI3	P08754	354 aa		10.48	□□□□□ -0.73
SYNE2-217	ENST00000555022	RBM6	P78332	1123 aa	Known RBP	10.48	□□□□□ -0.73
SYNE2-217	ENST00000555022	TMC6	Q7Z403	805 aa		10.48	□□□□□ -0.73
SYNE2-217	ENST00000555022	LEO1	Q8WVC0	666 aa	Predicted RBP	10.48	□□□□□ -0.73
SYNE2-217	ENST00000555022	BRF1	Q92994	677 aa		10.48	□□□□□ -0.73
SYNE2-217	ENST00000555022	TIGD1	Q96MW7	591 aa		10.48	□□□□□ -0.73
SYNE2-217	ENST00000555022	NOL10	Q9BSC4	688 aa	Known RBP	10.48	□□□□□ -0.73
SYNE2-217	ENST00000555022	ADGRB1	O14514	1584 aa		10.48	□□□□□ -0.73
SYNE2-217	ENST00000555022	ANAPC15	P60006	121 aa		10.48	□□□□□ -0.73
SYNE2-217	ENST00000555022	ARHGAP29	Q52LW3	1261 aa		10.48	□□□□□ -0.73
SYNE2-217	ENST00000555022	ILDR1	Q86SU0	546 aa	Predicted RBP	10.48	□□□□□ -0.73
SYNE2-217	ENST00000555022	TNFRSF11A	Q9Y6Q6	616 aa	Predicted RBP	10.48	□□□□□ -0.73
SYNE2-217	ENST00000555022	GLI2	P10070	1586 aa		10.48	□□□□□ -0.73
SYNE2-217	ENST00000555022	AMPH	P49418	695 aa		10.48	□□□□□ -0.73
SYNE2-217	ENST00000555022	NMI	Q13287	307 aa	Predicted RBP	10.48	□□□□□ -0.73
SYNE2-217	ENST00000555022	FEZ1	Q99689	392 aa		10.48	□□□□□ -0.73
SYNE2-217	ENST00000555022	FSD1	Q9BTV5	496 aa		10.48	□□□□□ -0.73
SYNE2-217	ENST00000555022	TLR7	Q9NYK1	1049 aa	Known RBP	10.48	□□□□□ -0.73
SYNE2-217	ENST00000555022	KIF1B	O60333	1816 aa		10.48	□□□□□ -0.73
SYNE2-217	ENST00000555022	ABCC3	O15438	1527 aa		10.47	□□□□□ -0.73
SYNE2-217	ENST00000555022	ZKSCAN1	P17029	563 aa	Predicted RBP	10.47	□□□□□ -0.73
SYNE2-217	ENST00000555022	HNRNPH2	P55795	449 aa	Known RBP	10.47	□□□□□ -0.73
SYNE2-217	ENST00000555022	PAXIP1	Q6ZW49	1069 aa	Predicted RBP	10.47	□□□□□ -0.73
SYNE2-217	ENST00000555022	ZNF397	Q8NF99	534 aa	Predicted RBP	10.47	□□□□□ -0.73
SYNE2-217	ENST00000555022	NCOA5	Q9HCD5	579 aa	Known RBP	10.47	□□□□□ -0.73

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