RNA–Protein interactions for RNA: ENST00000549139.5

CHMP1A-206, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 2

Gene CHMP1A, Length 812 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-206ENST00000549139 TAOK3Q9H2K8 898 aa20.83■□□□□ 0.93
CHMP1A-206ENST00000549139 CNTNAP1P78357 1384 aa20.83■□□□□ 0.92
CHMP1A-206ENST00000549139 FOXN1O15353 648 aa20.82■□□□□ 0.92
CHMP1A-206ENST00000549139 NEFMP07197 916 aa20.82■□□□□ 0.92
CHMP1A-206ENST00000549139 ZNF496Q96IT1 587 aaPredicted RBP20.82■□□□□ 0.92
CHMP1A-206ENST00000549139 PLEKHF1Q96S99 279 aa20.82■□□□□ 0.92
CHMP1A-206ENST00000549139 TBC1D2BQ9UPU7 963 aa20.81■□□□□ 0.92
CHMP1A-206ENST00000549139 ARFGEF2Q9Y6D5 1785 aa20.8■□□□□ 0.92
CHMP1A-206ENST00000549139 ANP32CO43423 234 aa20.8■□□□□ 0.92
CHMP1A-206ENST00000549139 TTC5Q8N0Z6 440 aa20.8■□□□□ 0.92
CHMP1A-206ENST00000549139 HEG1Q9ULI3 1381 aa20.8■□□□□ 0.92
CHMP1A-206ENST00000549139 SCN4AP35499 1836 aa20.79■□□□□ 0.92
CHMP1A-206ENST00000549139 SRGNP10124 158 aa20.79■□□□□ 0.92
CHMP1A-206ENST00000549139 IL6STP40189 918 aaPredicted RBP20.79■□□□□ 0.92
CHMP1A-206ENST00000549139 STYK1Q6J9G0 422 aa20.79■□□□□ 0.92
CHMP1A-206ENST00000549139 PRPF40BQ6NWY9 871 aaKnown RBP20.79■□□□□ 0.92
CHMP1A-206ENST00000549139 IL17REQ8NFR9 667 aa20.79■□□□□ 0.92
CHMP1A-206ENST00000549139 CNKSR1Q969H4 720 aa20.79■□□□□ 0.92
CHMP1A-206ENST00000549139 L3MBTL3Q96JM7 780 aaPredicted RBP20.79■□□□□ 0.92
CHMP1A-206ENST00000549139 PRDM10Q9NQV6 1147 aa20.79■□□□□ 0.92
CHMP1A-206ENST00000549139 CACNA1SQ13698 1873 aa20.79■□□□□ 0.92
CHMP1A-206ENST00000549139 SIPA1L3O60292 1781 aaPredicted RBP20.78■□□□□ 0.92
CHMP1A-206ENST00000549139 CAMTA2O94983 1202 aa20.78■□□□□ 0.92
CHMP1A-206ENST00000549139 ZNF790Q6PG37 636 aa20.78■□□□□ 0.92
CHMP1A-206ENST00000549139 C7orf43Q8WVR3 580 aa20.78■□□□□ 0.92
CHMP1A-206ENST00000549139 HTATSF1O43719 755 aaKnown RBP20.77■□□□□ 0.92
CHMP1A-206ENST00000549139 LDHDQ86WU2 507 aa20.77■□□□□ 0.92
CHMP1A-206ENST00000549139 CNBD1Q8NA66 436 aa20.77■□□□□ 0.92
CHMP1A-206ENST00000549139 TEX13AQ9BXU3 409 aaPredicted RBP20.77■□□□□ 0.92
CHMP1A-206ENST00000549139 TAF1DQ9H5J8 278 aaPredicted RBP20.77■□□□□ 0.92
CHMP1A-206ENST00000549139 IQCA1LA6NCM1 817 aa20.76■□□□□ 0.91
CHMP1A-206ENST00000549139 ITGBL1O95965 494 aaPredicted RBP20.76■□□□□ 0.91
CHMP1A-206ENST00000549139 A1BGP04217 495 aa20.76■□□□□ 0.91
CHMP1A-206ENST00000549139 WDR43Q15061 677 aaKnown RBP eCLIP20.76■□□□□ 0.91
CHMP1A-206ENST00000549139 MASTLQ96GX5 879 aa20.76■□□□□ 0.91
CHMP1A-206ENST00000549139 SETDB2Q96T68 719 aa20.76■□□□□ 0.91
CHMP1A-206ENST00000549139 CEMIPQ8WUJ3 1361 aa20.75■□□□□ 0.91
CHMP1A-206ENST00000549139 VEGFBP49765 207 aa20.75■□□□□ 0.91
CHMP1A-206ENST00000549139 SOGA3Q5TF21 947 aa20.75■□□□□ 0.91
CHMP1A-206ENST00000549139 RTF1Q92541 710 aaKnown RBP20.75■□□□□ 0.91
CHMP1A-206ENST00000549139 BCORQ6W2J9 1755 aa20.74■□□□□ 0.91
CHMP1A-206ENST00000549139 ZNF330Q9Y3S2 320 aaPredicted RBP20.74■□□□□ 0.91
CHMP1A-206ENST00000549139 ADAMTSL1Q8N6G6 1762 aa20.74■□□□□ 0.91
CHMP1A-206ENST00000549139 MAPK8IP3Q9UPT6 1336 aa20.74■□□□□ 0.91
CHMP1A-206ENST00000549139 CTCFP49711 727 aaPredicted RBP20.73■□□□□ 0.91
CHMP1A-206ENST00000549139 ST5P78524 1137 aa20.73■□□□□ 0.91
CHMP1A-206ENST00000549139 TEFQ10587 303 aa20.73■□□□□ 0.91
CHMP1A-206ENST00000549139 WBP1LQ9NX94 342 aa20.73■□□□□ 0.91
CHMP1A-206ENST00000549139 ADAMTS8Q9UP79 889 aa20.73■□□□□ 0.91
CHMP1A-206ENST00000549139 TMEM88BA6NKF7 163 aa20.72■□□□□ 0.91
CHMP1A-206ENST00000549139 NFE2L2Q16236 605 aa20.72■□□□□ 0.91
CHMP1A-206ENST00000549139 KLRG2A4D1S0 409 aaPredicted RBP20.71■□□□□ 0.91
CHMP1A-206ENST00000549139 FMNL2Q96PY5 1086 aa20.71■□□□□ 0.91
CHMP1A-206ENST00000549139 ZNF541Q9H0D2 1346 aa20.71■□□□□ 0.91
CHMP1A-206ENST00000549139 CCDC93Q567U6 631 aa20.7■□□□□ 0.9
CHMP1A-206ENST00000549139 DZIP3Q86Y13 1208 aaKnown RBP20.7■□□□□ 0.9
CHMP1A-206ENST00000549139 RUNDC1Q96C34 613 aa20.7■□□□□ 0.9
CHMP1A-206ENST00000549139 KCNQ3O43525 872 aa20.69■□□□□ 0.9
CHMP1A-206ENST00000549139 FKBP4Q02790 459 aaKnown RBP eCLIP20.69■□□□□ 0.9
CHMP1A-206ENST00000549139 CCDC184Q52MB2 194 aa20.69■□□□□ 0.9
CHMP1A-206ENST00000549139 MCM10Q7L590 875 aa20.69■□□□□ 0.9
CHMP1A-206ENST00000549139 AIDAQ96BJ3 306 aa20.69■□□□□ 0.9
CHMP1A-206ENST00000549139 NPHP1O15259 732 aa20.68■□□□□ 0.9
CHMP1A-206ENST00000549139 LBX1P52954 281 aa20.68■□□□□ 0.9
CHMP1A-206ENST00000549139 CLEC4GQ6UXB4 293 aa20.68■□□□□ 0.9
CHMP1A-206ENST00000549139 ZNF277Q9NRM2 450 aaPredicted RBP20.68■□□□□ 0.9
CHMP1A-206ENST00000549139 RASSF10A6NK89 507 aa20.67■□□□□ 0.9
CHMP1A-206ENST00000549139 NPR1P16066 1061 aa20.67■□□□□ 0.9
CHMP1A-206ENST00000549139 TMPOP42166 694 aaKnown RBP20.67■□□□□ 0.9
CHMP1A-206ENST00000549139 DCTN1Q14203 1278 aa20.67■□□□□ 0.9
CHMP1A-206ENST00000549139 EAPPQ56P03 285 aaPredicted RBP20.67■□□□□ 0.9
CHMP1A-206ENST00000549139 OLFM4Q6UX06 510 aa20.67■□□□□ 0.9
CHMP1A-206ENST00000549139 HACL1Q9UJ83 578 aa20.67■□□□□ 0.9
CHMP1A-206ENST00000549139 USP16Q9Y5T5 823 aa20.67■□□□□ 0.9
CHMP1A-206ENST00000549139 BTBD11A6QL63 1104 aa20.66■□□□□ 0.9
CHMP1A-206ENST00000549139 EPHX2P34913 555 aa20.66■□□□□ 0.9
CHMP1A-206ENST00000549139 RIPK4P57078 832 aa20.66■□□□□ 0.9
CHMP1A-206ENST00000549139 NPM2Q86SE8 214 aaKnown RBP20.66■□□□□ 0.9
CHMP1A-206ENST00000549139 NBPF5PQ86XG9 351 aaPredicted RBP20.66■□□□□ 0.9
CHMP1A-206ENST00000549139 CCDC146Q8IYE0 955 aa20.66■□□□□ 0.9
CHMP1A-206ENST00000549139 FZD9O00144 591 aa20.65■□□□□ 0.9
CHMP1A-206ENST00000549139 HSPA8P11142 646 aaKnown RBP20.65■□□□□ 0.9
CHMP1A-206ENST00000549139 PIP4K2AP48426 406 aaPredicted RBP20.65■□□□□ 0.9
CHMP1A-206ENST00000549139 SNED1Q8TER0 1413 aa20.64■□□□□ 0.89
CHMP1A-206ENST00000549139 PRAMEF22A3QJZ6 481 aa20.64■□□□□ 0.89
CHMP1A-206ENST00000549139 SLC34A2O95436 690 aa20.64■□□□□ 0.89
CHMP1A-206ENST00000549139 TAF7Q15545 349 aaPredicted RBP20.64■□□□□ 0.89
CHMP1A-206ENST00000549139 CNTROBQ8N137 903 aa20.64■□□□□ 0.89
CHMP1A-206ENST00000549139 MRS2Q9HD23 443 aa20.64■□□□□ 0.89
CHMP1A-206ENST00000549139 RNF123Q5XPI4 1314 aa20.63■□□□□ 0.89
CHMP1A-206ENST00000549139 DEFB115Q30KQ5 88 aa20.63■□□□□ 0.89
CHMP1A-206ENST00000549139 MAP1SQ66K74 1059 aaPredicted RBP20.63■□□□□ 0.89
CHMP1A-206ENST00000549139 PNMA8AQ86V59 439 aaPredicted RBP20.63■□□□□ 0.89
CHMP1A-206ENST00000549139 RTKN2Q8IZC4 609 aa20.63■□□□□ 0.89
CHMP1A-206ENST00000549139 PNISRQ8TF01 805 aaKnown RBP20.63■□□□□ 0.89
CHMP1A-206ENST00000549139 CLEC11AQ9Y240 323 aa20.63■□□□□ 0.89
CHMP1A-206ENST00000549139 RGL2O15211 777 aa20.62■□□□□ 0.89
CHMP1A-206ENST00000549139 LMOD3Q0VAK6 560 aa20.62■□□□□ 0.89
CHMP1A-206ENST00000549139 ABHD8Q96I13 439 aa20.62■□□□□ 0.89
CHMP1A-206ENST00000549139 WDR33Q9C0J8 1336 aaKnown RBP20.61■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms