RNA–Protein interactions for RNA: ENST00000548945.6

PTCH1-218, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 243 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-218ENST00000548945 ST5P78524 1137 aa17.16■□□□□ 0.34
PTCH1-218ENST00000548945 KLRG1Q96E93 195 aa17.16■□□□□ 0.34
PTCH1-218ENST00000548945 USP16Q9Y5T5 823 aa17.16■□□□□ 0.34
PTCH1-218ENST00000548945 STYK1Q6J9G0 422 aa17.15■□□□□ 0.34
PTCH1-218ENST00000548945 JMYQ8N9B5 988 aa17.15■□□□□ 0.34
PTCH1-218ENST00000548945 CNKSR1Q969H4 720 aa17.15■□□□□ 0.34
PTCH1-218ENST00000548945 NPHP1O15259 732 aa17.14■□□□□ 0.33
PTCH1-218ENST00000548945 C21orf2O43822 256 aa17.14■□□□□ 0.33
PTCH1-218ENST00000548945 SRGNP10124 158 aa17.14■□□□□ 0.33
PTCH1-218ENST00000548945 SOGA3Q5TF21 947 aa17.14■□□□□ 0.33
PTCH1-218ENST00000548945 DPY19L2Q6NUT2 758 aa17.14■□□□□ 0.33
PTCH1-218ENST00000548945 ZNF652Q9Y2D9 606 aa17.14■□□□□ 0.33
PTCH1-218ENST00000548945 MCM10Q7L590 875 aa17.13■□□□□ 0.33
PTCH1-218ENST00000548945 MASTLQ96GX5 879 aa17.13■□□□□ 0.33
PTCH1-218ENST00000548945 DLG5Q8TDM6 1919 aa17.13■□□□□ 0.33
PTCH1-218ENST00000548945 LAMB4A4D0S4 1761 aa17.12■□□□□ 0.33
PTCH1-218ENST00000548945 CCDC24Q8N4L8 307 aa17.12■□□□□ 0.33
PTCH1-218ENST00000548945 TAOK3Q9H2K8 898 aa17.12■□□□□ 0.33
PTCH1-218ENST00000548945 HTRA3P83110 453 aa17.11■□□□□ 0.33
PTCH1-218ENST00000548945 TAF7Q15545 349 aaPredicted RBP17.11■□□□□ 0.33
PTCH1-218ENST00000548945 ERFEQ4G0M1 354 aa17.11■□□□□ 0.33
PTCH1-218ENST00000548945 PRPF40BQ6NWY9 871 aaKnown RBP17.11■□□□□ 0.33
PTCH1-218ENST00000548945 NBPF5PQ86XG9 351 aaPredicted RBP17.11■□□□□ 0.33
PTCH1-218ENST00000548945 PRAMEF22A3QJZ6 481 aa17.1■□□□□ 0.33
PTCH1-218ENST00000548945 KLRG2A4D1S0 409 aaPredicted RBP17.1■□□□□ 0.33
PTCH1-218ENST00000548945 POTECB2RU33 542 aa17.1■□□□□ 0.33
PTCH1-218ENST00000548945 NBPF26B4DH59 902 aa17.09■□□□□ 0.33
PTCH1-218ENST00000548945 PIP4K2AP48426 406 aaPredicted RBP17.09■□□□□ 0.33
PTCH1-218ENST00000548945 NBPF10Q6P3W6 841 aaKnown RBP17.09■□□□□ 0.33
PTCH1-218ENST00000548945 NBPF15Q8N660 670 aa17.09■□□□□ 0.33
PTCH1-218ENST00000548945 ZNF219Q9P2Y4 722 aaPredicted RBP17.09■□□□□ 0.33
PTCH1-218ENST00000548945 KDM3BQ7LBC6 1761 aa17.09■□□□□ 0.33
PTCH1-218ENST00000548945 NEFMP07197 916 aa17.08■□□□□ 0.32
PTCH1-218ENST00000548945 NPR1P16066 1061 aa17.08■□□□□ 0.32
PTCH1-218ENST00000548945 DCTN1Q14203 1278 aa17.08■□□□□ 0.32
PTCH1-218ENST00000548945 TPTE2Q6XPS3 522 aa17.08■□□□□ 0.32
PTCH1-218ENST00000548945 C7orf43Q8WVR3 580 aa17.08■□□□□ 0.32
PTCH1-218ENST00000548945 SCN4AP35499 1836 aa17.07■□□□□ 0.32
PTCH1-218ENST00000548945 NUP98P52948 1817 aa17.07■□□□□ 0.32
PTCH1-218ENST00000548945 PNISRQ8TF01 805 aaKnown RBP17.07■□□□□ 0.32
PTCH1-218ENST00000548945 NIP7Q9Y221 180 aaKnown RBP eCLIP17.07■□□□□ 0.32
PTCH1-218ENST00000548945 CCDC93Q567U6 631 aa17.05■□□□□ 0.32
PTCH1-218ENST00000548945 IQCA1LA6NCM1 817 aa17.03■□□□□ 0.32
PTCH1-218ENST00000548945 ERVV-1B6SEH8 477 aa17.03■□□□□ 0.32
PTCH1-218ENST00000548945 FKBP4Q02790 459 aaKnown RBP eCLIP17.03■□□□□ 0.32
PTCH1-218ENST00000548945 RTKN2Q8IZC4 609 aa17.03■□□□□ 0.32
PTCH1-218ENST00000548945 L3MBTL3Q96JM7 780 aaPredicted RBP17.03■□□□□ 0.32
PTCH1-218ENST00000548945 PLEKHF1Q96S99 279 aa17.03■□□□□ 0.32
PTCH1-218ENST00000548945 PNNQ9H307 717 aaKnown RBP17.03■□□□□ 0.32
PTCH1-218ENST00000548945 DDNO94850 711 aaPredicted RBP17.02■□□□□ 0.32
PTCH1-218ENST00000548945 ALDH1B1P30837 517 aa17.02■□□□□ 0.32
PTCH1-218ENST00000548945 HLFQ16534 295 aa17.02■□□□□ 0.32
PTCH1-218ENST00000548945 CHADLQ6NUI6 762 aa17.02■□□□□ 0.32
PTCH1-218ENST00000548945 NYXQ9GZU5 481 aa17.02■□□□□ 0.32
PTCH1-218ENST00000548945 MIS18AQ9NYP9 233 aa17.02■□□□□ 0.32
PTCH1-218ENST00000548945 EIF4A1P60842 406 aaKnown RBP17.01■□□□□ 0.31
PTCH1-218ENST00000548945 NFE2L2Q16236 605 aa17.01■□□□□ 0.31
PTCH1-218ENST00000548945 RIC1Q4ADV7 1423 aa17.01■□□□□ 0.31
PTCH1-218ENST00000548945 IBTKQ9P2D0 1353 aaPredicted RBP17.01■□□□□ 0.31
PTCH1-218ENST00000548945 MAP3K15Q6ZN16 1313 aa17■□□□□ 0.31
PTCH1-218ENST00000548945 GTF2E1P29083 439 aaPredicted RBP17■□□□□ 0.31
PTCH1-218ENST00000548945 CRY2Q49AN0 593 aa17■□□□□ 0.31
PTCH1-218ENST00000548945 CREBZFQ9NS37 354 aa17■□□□□ 0.31
PTCH1-218ENST00000548945 ERBB4Q15303 1308 aa16.99■□□□□ 0.31
PTCH1-218ENST00000548945 FAM177BA6PVY3 158 aa16.98■□□□□ 0.31
PTCH1-218ENST00000548945 COL13A1Q5TAT6 717 aaPredicted RBP16.98■□□□□ 0.31
PTCH1-218ENST00000548945 CC2D2BQ6DHV5 1058 aa16.98■□□□□ 0.31
PTCH1-218ENST00000548945 KIF6Q6ZMV9 814 aa16.98■□□□□ 0.31
PTCH1-218ENST00000548945 LDHDQ86WU2 507 aa16.98■□□□□ 0.31
PTCH1-218ENST00000548945 MAPK8IP3Q9UPT6 1336 aa16.97■□□□□ 0.31
PTCH1-218ENST00000548945 SNED1Q8TER0 1413 aa16.97■□□□□ 0.31
PTCH1-218ENST00000548945 GRIPAP1Q4V328 841 aa16.97■□□□□ 0.31
PTCH1-218ENST00000548945 PSMD1Q99460 953 aa16.97■□□□□ 0.31
PTCH1-218ENST00000548945 TAF1DQ9H5J8 278 aaPredicted RBP16.97■□□□□ 0.31
PTCH1-218ENST00000548945 ZNF277Q9NRM2 450 aaPredicted RBP16.97■□□□□ 0.31
PTCH1-218ENST00000548945 POTEIP0CG38 1075 aa16.96■□□□□ 0.31
PTCH1-218ENST00000548945 POTEJP0CG39 1038 aa16.96■□□□□ 0.31
PTCH1-218ENST00000548945 HOXA10P31260 410 aaPredicted RBP16.96■□□□□ 0.31
PTCH1-218ENST00000548945 RRP7AQ9Y3A4 280 aaKnown RBP16.96■□□□□ 0.31
PTCH1-218ENST00000548945 ABCC12Q96J65 1359 aa16.96■□□□□ 0.31
PTCH1-218ENST00000548945 ADAMTSL1Q8N6G6 1762 aa16.95■□□□□ 0.3
PTCH1-218ENST00000548945 FZD9O00144 591 aa16.95■□□□□ 0.3
PTCH1-218ENST00000548945 IARSP41252 1262 aaKnown RBP16.95■□□□□ 0.3
PTCH1-218ENST00000548945 OLFM4Q6UX06 510 aa16.95■□□□□ 0.3
PTCH1-218ENST00000548945 TTLL7Q6ZT98 887 aa16.95■□□□□ 0.3
PTCH1-218ENST00000548945 SYNE4Q8N205 404 aa16.95■□□□□ 0.3
PTCH1-218ENST00000548945 NGEFQ8N5V2 710 aa16.95■□□□□ 0.3
PTCH1-218ENST00000548945 THUMPD2Q9BTF0 503 aaKnown RBP16.95■□□□□ 0.3
PTCH1-218ENST00000548945 BABAM1Q9NWV8 329 aa16.95■□□□□ 0.3
PTCH1-218ENST00000548945 PASKQ96RG2 1323 aa16.95■□□□□ 0.3
PTCH1-218ENST00000548945 ZNF541Q9H0D2 1346 aa16.95■□□□□ 0.3
PTCH1-218ENST00000548945 HSPA1AP0DMV8 641 aaKnown RBP16.94■□□□□ 0.3
PTCH1-218ENST00000548945 HSPA1BP0DMV9 641 aaKnown RBP16.94■□□□□ 0.3
PTCH1-218ENST00000548945 MYL6BP14649 208 aa16.94■□□□□ 0.3
PTCH1-218ENST00000548945 GIGYF2Q6Y7W6 1299 aaKnown RBP16.94■□□□□ 0.3
PTCH1-218ENST00000548945 NUTM1Q86Y26 1132 aa16.94■□□□□ 0.3
PTCH1-218ENST00000548945 ZNF34Q8IZ26 560 aa16.94■□□□□ 0.3
PTCH1-218ENST00000548945 RPGRQ92834 1020 aaKnown RBP16.94■□□□□ 0.3
PTCH1-218ENST00000548945 HACL1Q9UJ83 578 aa16.94■□□□□ 0.3
PTCH1-218ENST00000548945 UBN2Q6ZU65 1347 aa16.94■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 9.2 ms