RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 PCDH11YQ9BZA8 1340 aa19.94■□□□□ 0.78
COL4A1-204ENST00000543140 EVA1CP58658 441 aa19.94■□□□□ 0.78
COL4A1-204ENST00000543140 METTL22Q9BUU2 404 aaPredicted RBP19.94■□□□□ 0.78
COL4A1-204ENST00000543140 IL25Q9H293 177 aa19.94■□□□□ 0.78
COL4A1-204ENST00000543140 UTYO14607 1347 aa19.93■□□□□ 0.78
COL4A1-204ENST00000543140 GCKRQ14397 625 aa19.93■□□□□ 0.78
COL4A1-204ENST00000543140 CLASRPQ8N2M8 674 aaKnown RBP19.93■□□□□ 0.78
COL4A1-204ENST00000543140 TNPO1Q92973 898 aaKnown RBP19.93■□□□□ 0.78
COL4A1-204ENST00000543140 SIL1Q9H173 461 aa19.92■□□□□ 0.78
COL4A1-204ENST00000543140 PARP4Q9UKK3 1724 aaKnown RBP19.92■□□□□ 0.78
COL4A1-204ENST00000543140 ST18O60284 1047 aa19.92■□□□□ 0.78
COL4A1-204ENST00000543140 IL2RBP14784 551 aa19.92■□□□□ 0.78
COL4A1-204ENST00000543140 KLHDC4Q8TBB5 520 aa19.92■□□□□ 0.78
COL4A1-204ENST00000543140 PALD1Q9ULE6 856 aa19.92■□□□□ 0.78
COL4A1-204ENST00000543140 CIZ1Q9ULV3 898 aaPredicted RBP19.92■□□□□ 0.78
COL4A1-204ENST00000543140 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP19.92■□□□□ 0.78
COL4A1-204ENST00000543140 PLEKHG2Q9H7P9 1386 aa19.91■□□□□ 0.78
COL4A1-204ENST00000543140 ATP5J2-PTCD1G3V325 749 aa19.91■□□□□ 0.78
COL4A1-204ENST00000543140 PTCD1O75127 700 aaKnown RBP19.91■□□□□ 0.78
COL4A1-204ENST00000543140 EPHA10Q5JZY3 1008 aa19.91■□□□□ 0.78
COL4A1-204ENST00000543140 ABCA3Q99758 1704 aa19.9■□□□□ 0.78
COL4A1-204ENST00000543140 CARD10Q9BWT7 1032 aa19.9■□□□□ 0.78
COL4A1-204ENST00000543140 IFIT2P09913 472 aaKnown RBP19.9■□□□□ 0.78
COL4A1-204ENST00000543140 NEK4P51957 841 aa19.9■□□□□ 0.78
COL4A1-204ENST00000543140 RAB3GAP1Q15042 981 aa19.9■□□□□ 0.78
COL4A1-204ENST00000543140 AACSQ86V21 672 aa19.9■□□□□ 0.78
COL4A1-204ENST00000543140 G3BP1Q13283 466 aaKnown RBP eCLIP19.89■□□□□ 0.77
COL4A1-204ENST00000543140 ERC1Q8IUD2 1116 aa19.89■□□□□ 0.77
COL4A1-204ENST00000543140 CNTROBQ8N137 903 aa19.89■□□□□ 0.77
COL4A1-204ENST00000543140 SASH1O94885 1247 aa19.89■□□□□ 0.77
COL4A1-204ENST00000543140 NBPF26B4DH59 902 aa19.88■□□□□ 0.77
COL4A1-204ENST00000543140 MCCP23508 829 aa19.88■□□□□ 0.77
COL4A1-204ENST00000543140 NBPF14Q5TI25 921 aa19.88■□□□□ 0.77
COL4A1-204ENST00000543140 NBPF10Q6P3W6 841 aaKnown RBP19.88■□□□□ 0.77
COL4A1-204ENST00000543140 UBE3BQ7Z3V4 1068 aa19.88■□□□□ 0.77
COL4A1-204ENST00000543140 NBPF15Q8N660 670 aa19.88■□□□□ 0.77
COL4A1-204ENST00000543140 AFDNP55196 1824 aaKnown RBP19.88■□□□□ 0.77
COL4A1-204ENST00000543140 GLRX3O76003 335 aaKnown RBP19.87■□□□□ 0.77
COL4A1-204ENST00000543140 GZF1Q9H116 711 aaPredicted RBP19.87■□□□□ 0.77
COL4A1-204ENST00000543140 TTC41PQ6P2S7 1318 aa19.87■□□□□ 0.77
COL4A1-204ENST00000543140 ERVV-2B6SEH9 535 aa19.87■□□□□ 0.77
COL4A1-204ENST00000543140 SSFA2P28290 1259 aa19.87■□□□□ 0.77
COL4A1-204ENST00000543140 ECHDC1Q9NTX5 307 aa19.87■□□□□ 0.77
COL4A1-204ENST00000543140 GLI3P10071 1580 aa19.87■□□□□ 0.77
COL4A1-204ENST00000543140 CWC27Q6UX04 472 aaKnown RBP19.86■□□□□ 0.77
COL4A1-204ENST00000543140 CCDC8Q9H0W5 538 aaPredicted RBP19.86■□□□□ 0.77
COL4A1-204ENST00000543140 A1BGP04217 495 aa19.86■□□□□ 0.77
COL4A1-204ENST00000543140 EAF2Q96CJ1 260 aaPredicted RBP19.86■□□□□ 0.77
COL4A1-204ENST00000543140 USP42Q9H9J4 1324 aaKnown RBP19.86■□□□□ 0.77
COL4A1-204ENST00000543140 ARFGEF2Q9Y6D5 1785 aa19.85■□□□□ 0.77
COL4A1-204ENST00000543140 A0A087WZG4 1122 aa19.85■□□□□ 0.77
COL4A1-204ENST00000543140 TRAK2O60296 914 aa19.85■□□□□ 0.77
COL4A1-204ENST00000543140 ZGPATQ8N5A5 531 aaKnown RBP19.85■□□□□ 0.77
COL4A1-204ENST00000543140 NOL8Q76FK4 1167 aaKnown RBP19.84■□□□□ 0.77
COL4A1-204ENST00000543140 PLBD2Q8NHP8 589 aa19.84■□□□□ 0.77
COL4A1-204ENST00000543140 GPATCH3Q96I76 525 aa19.84■□□□□ 0.77
COL4A1-204ENST00000543140 LAMB4A4D0S4 1761 aa19.84■□□□□ 0.77
COL4A1-204ENST00000543140 SGSM2O43147 1006 aa19.84■□□□□ 0.77
COL4A1-204ENST00000543140 NKX1-1Q15270 411 aaPredicted RBP19.84■□□□□ 0.77
COL4A1-204ENST00000543140 TTLL7Q6ZT98 887 aa19.84■□□□□ 0.77
COL4A1-204ENST00000543140 TLR7Q9NYK1 1049 aaKnown RBP19.84■□□□□ 0.77
COL4A1-204ENST00000543140 DDX11L8A8MPP1 907 aa19.83■□□□□ 0.77
COL4A1-204ENST00000543140 UPF3BQ9BZI7 483 aaKnown RBP19.83■□□□□ 0.77
COL4A1-204ENST00000543140 GBP4Q96PP9 640 aa19.83■□□□□ 0.76
COL4A1-204ENST00000543140 SHANK3Q9BYB0 1731 aa19.83■□□□□ 0.76
COL4A1-204ENST00000543140 BTG4Q9NY30 223 aa19.83■□□□□ 0.76
COL4A1-204ENST00000543140 NHSL1Q5SYE7 1610 aa19.83■□□□□ 0.76
COL4A1-204ENST00000543140 KAT6BQ8WYB5 2073 aa19.82■□□□□ 0.76
COL4A1-204ENST00000543140 DIAPH3Q9NSV4 1193 aa19.82■□□□□ 0.76
COL4A1-204ENST00000543140 ANAPC15P60006 121 aa19.81■□□□□ 0.76
COL4A1-204ENST00000543140 PKP1Q13835 747 aa19.81■□□□□ 0.76
COL4A1-204ENST00000543140 IL27Q8NEV9 243 aa19.81■□□□□ 0.76
COL4A1-204ENST00000543140 ZBTB3Q9H5J0 574 aa19.81■□□□□ 0.76
COL4A1-204ENST00000543140 UBR2Q8IWV8 1755 aa19.81■□□□□ 0.76
COL4A1-204ENST00000543140 HSPA4P34932 840 aa19.8■□□□□ 0.76
COL4A1-204ENST00000543140 TMX3Q96JJ7 454 aa19.8■□□□□ 0.76
COL4A1-204ENST00000543140 KCPQ6ZWJ8 1503 aa19.8■□□□□ 0.76
COL4A1-204ENST00000543140 KIAA1211Q6ZU35 1233 aa19.8■□□□□ 0.76
COL4A1-204ENST00000543140 ARXQ96QS3 562 aa19.8■□□□□ 0.76
COL4A1-204ENST00000543140 LSG1Q9H089 658 aaKnown RBP19.8■□□□□ 0.76
COL4A1-204ENST00000543140 TMOD3Q9NYL9 352 aa19.79■□□□□ 0.76
COL4A1-204ENST00000543140 ZNF330Q9Y3S2 320 aaPredicted RBP19.79■□□□□ 0.76
COL4A1-204ENST00000543140 RAD50Q92878 1312 aa19.79■□□□□ 0.76
COL4A1-204ENST00000543140 BOLA2Q9H3K6 86 aa19.79■□□□□ 0.76
COL4A1-204ENST00000543140 RTN4Q9NQC3 1192 aaKnown RBP19.79■□□□□ 0.76
COL4A1-204ENST00000543140 RFX5P48382 616 aaPredicted RBP19.78■□□□□ 0.76
COL4A1-204ENST00000543140 PTPN12Q05209 780 aaKnown RBP19.78■□□□□ 0.76
COL4A1-204ENST00000543140 CHMP3Q9Y3E7 222 aa19.78■□□□□ 0.76
COL4A1-204ENST00000543140 ERBB4Q15303 1308 aa19.78■□□□□ 0.76
COL4A1-204ENST00000543140 EVI5LQ96CN4 794 aa19.78■□□□□ 0.76
COL4A1-204ENST00000543140 CASP7P55210 303 aa19.77■□□□□ 0.76
COL4A1-204ENST00000543140 LMBR1LQ6UX01 489 aa19.77■□□□□ 0.76
COL4A1-204ENST00000543140 COPRSQ9NQ92 184 aa19.77■□□□□ 0.76
COL4A1-204ENST00000543140 BRPF3Q9ULD4 1205 aa19.77■□□□□ 0.76
COL4A1-204ENST00000543140 TFCP2Q12800 502 aa19.77■□□□□ 0.76
COL4A1-204ENST00000543140 RABL6Q3YEC7 729 aaPredicted RBP19.77■□□□□ 0.76
COL4A1-204ENST00000543140 CWC22Q9HCG8 908 aaKnown RBP19.77■□□□□ 0.76
COL4A1-204ENST00000543140 ASAP1Q9ULH1 1129 aa19.77■□□□□ 0.76
COL4A1-204ENST00000543140 TOGARAM1Q9Y4F4 1720 aa19.77■□□□□ 0.75
COL4A1-204ENST00000543140 RASEFQ8IZ41 740 aa19.76■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms