RNA–Protein interactions for RNA: ENST00000526313.5

USH1C-204, Transcript of USH1 protein network component harmonin, humanhuman

TSL 1 (best)

Gene USH1C, Length 2,149 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-204ENST00000526313 NUTM1Q86Y26 1132 aa19.52■□□□□ 0.72
USH1C-204ENST00000526313 ESYT1Q9BSJ8 1104 aa19.52■□□□□ 0.72
USH1C-204ENST00000526313 RBM42Q9BTD8 480 aaKnown RBP19.52■□□□□ 0.72
USH1C-204ENST00000526313 CHMP5Q9NZZ3 219 aa19.52■□□□□ 0.72
USH1C-204ENST00000526313 AHDC1Q5TGY3 1603 aaPredicted RBP19.52■□□□□ 0.72
USH1C-204ENST00000526313 ERC1Q8IUD2 1116 aa19.52■□□□□ 0.72
USH1C-204ENST00000526313 BICC1Q9H694 974 aaKnown RBP19.52■□□□□ 0.72
USH1C-204ENST00000526313 COL22A1Q8NFW1 1626 aaPredicted RBP19.51■□□□□ 0.71
USH1C-204ENST00000526313 NBPF26B4DH59 902 aa19.51■□□□□ 0.71
USH1C-204ENST00000526313 NBPF14Q5TI25 921 aa19.51■□□□□ 0.71
USH1C-204ENST00000526313 NBPF10Q6P3W6 841 aaKnown RBP19.51■□□□□ 0.71
USH1C-204ENST00000526313 NBPF15Q8N660 670 aa19.51■□□□□ 0.71
USH1C-204ENST00000526313 MYD88Q99836 296 aa19.51■□□□□ 0.71
USH1C-204ENST00000526313 ARFGEF2Q9Y6D5 1785 aa19.51■□□□□ 0.71
USH1C-204ENST00000526313 UNC5CLQ8IV45 518 aa19.51■□□□□ 0.71
USH1C-204ENST00000526313 PLBD2Q8NHP8 589 aa19.51■□□□□ 0.71
USH1C-204ENST00000526313 TTC41PQ6P2S7 1318 aa19.5■□□□□ 0.71
USH1C-204ENST00000526313 COL14A1Q05707 1796 aaKnown RBP19.5■□□□□ 0.71
USH1C-204ENST00000526313 K7ELQ4 463 aaPredicted RBP19.5■□□□□ 0.71
USH1C-204ENST00000526313 TOGARAM1Q9Y4F4 1720 aa19.5■□□□□ 0.71
USH1C-204ENST00000526313 EPB41L2O43491 1005 aaKnown RBP19.49■□□□□ 0.71
USH1C-204ENST00000526313 DDX54Q8TDD1 881 aaKnown RBP19.49■□□□□ 0.71
USH1C-204ENST00000526313 ROBO1Q9Y6N7 1651 aa19.49■□□□□ 0.71
USH1C-204ENST00000526313 TRIM6-TRIM34B2RNG4 842 aa19.49■□□□□ 0.71
USH1C-204ENST00000526313 SPRYD3Q8NCJ5 442 aa19.49■□□□□ 0.71
USH1C-204ENST00000526313 IL17RAQ96F46 866 aa19.49■□□□□ 0.71
USH1C-204ENST00000526313 DISP2A7MBM2 1401 aa19.49■□□□□ 0.71
USH1C-204ENST00000526313 PIP4K2AP48426 406 aaPredicted RBP19.48■□□□□ 0.71
USH1C-204ENST00000526313 BTG4Q9NY30 223 aa19.48■□□□□ 0.71
USH1C-204ENST00000526313 PA2G4Q9UQ80 394 aaKnown RBP19.48■□□□□ 0.71
USH1C-204ENST00000526313 CLASRPQ8N2M8 674 aaKnown RBP19.48■□□□□ 0.71
USH1C-204ENST00000526313 RILPL2Q969X0 211 aa19.48■□□□□ 0.71
USH1C-204ENST00000526313 CIZ1Q9ULV3 898 aaPredicted RBP19.48■□□□□ 0.71
USH1C-204ENST00000526313 OS9Q13438 667 aaPredicted RBP19.47■□□□□ 0.71
USH1C-204ENST00000526313 SASH1O94885 1247 aa19.46■□□□□ 0.71
USH1C-204ENST00000526313 CASP7P55210 303 aa19.46■□□□□ 0.71
USH1C-204ENST00000526313 RABL6Q3YEC7 729 aaPredicted RBP19.46■□□□□ 0.71
USH1C-204ENST00000526313 EPHA10Q5JZY3 1008 aa19.46■□□□□ 0.71
USH1C-204ENST00000526313 AFDNP55196 1824 aaKnown RBP19.46■□□□□ 0.71
USH1C-204ENST00000526313 GLRX3O76003 335 aaKnown RBP19.46■□□□□ 0.71
USH1C-204ENST00000526313 LTBP4Q8N2S1 1624 aa19.46■□□□□ 0.71
USH1C-204ENST00000526313 COL16A1Q07092 1604 aaPredicted RBP19.45■□□□□ 0.7
USH1C-204ENST00000526313 NUP188Q5SRE5 1749 aa19.45■□□□□ 0.7
USH1C-204ENST00000526313 COPRSQ9NQ92 184 aa19.45■□□□□ 0.7
USH1C-204ENST00000526313 AK9Q5TCS8 1911 aa19.44■□□□□ 0.7
USH1C-204ENST00000526313 RFX5P48382 616 aaPredicted RBP19.44■□□□□ 0.7
USH1C-204ENST00000526313 G3BP1Q13283 466 aaKnown RBP eCLIP19.44■□□□□ 0.7
USH1C-204ENST00000526313 ECHDC1Q9NTX5 307 aa19.44■□□□□ 0.7
USH1C-204ENST00000526313 ANAPC15P60006 121 aa19.43■□□□□ 0.7
USH1C-204ENST00000526313 PLCH1Q4KWH8 1693 aa19.43■□□□□ 0.7
USH1C-204ENST00000526313 H7C1W4 665 aa19.43■□□□□ 0.7
USH1C-204ENST00000526313 A1BGP04217 495 aa19.43■□□□□ 0.7
USH1C-204ENST00000526313 CNTROBQ8N137 903 aa19.43■□□□□ 0.7
USH1C-204ENST00000526313 TMOD3Q9NYL9 352 aa19.43■□□□□ 0.7
USH1C-204ENST00000526313 TTLL7Q6ZT98 887 aa19.42■□□□□ 0.7
USH1C-204ENST00000526313 VSIG10Q8N0Z9 540 aa19.42■□□□□ 0.7
USH1C-204ENST00000526313 PTCD1O75127 700 aaKnown RBP19.42■□□□□ 0.7
USH1C-204ENST00000526313 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP19.42■□□□□ 0.7
USH1C-204ENST00000526313 A0A087WZG4 1122 aa19.41■□□□□ 0.7
USH1C-204ENST00000526313 ATP5J2-PTCD1G3V325 749 aa19.41■□□□□ 0.7
USH1C-204ENST00000526313 IFIT2P09913 472 aaKnown RBP19.41■□□□□ 0.7
USH1C-204ENST00000526313 PIGBQ92521 554 aa19.41■□□□□ 0.7
USH1C-204ENST00000526313 EAF2Q96CJ1 260 aaPredicted RBP19.41■□□□□ 0.7
USH1C-204ENST00000526313 LRP6O75581 1613 aa19.41■□□□□ 0.7
USH1C-204ENST00000526313 SGSM2O43147 1006 aa19.4■□□□□ 0.7
USH1C-204ENST00000526313 UBE3BQ7Z3V4 1068 aa19.4■□□□□ 0.7
USH1C-204ENST00000526313 GPATCH3Q96I76 525 aa19.4■□□□□ 0.7
USH1C-204ENST00000526313 TEX13AQ9BXU3 409 aaPredicted RBP19.4■□□□□ 0.7
USH1C-204ENST00000526313 IL25Q9H293 177 aa19.4■□□□□ 0.7
USH1C-204ENST00000526313 PTPN12Q05209 780 aaKnown RBP19.4■□□□□ 0.7
USH1C-204ENST00000526313 AACSQ86V21 672 aa19.4■□□□□ 0.7
USH1C-204ENST00000526313 ITGB4P16144 1822 aa19.4■□□□□ 0.7
USH1C-204ENST00000526313 ST18O60284 1047 aa19.39■□□□□ 0.69
USH1C-204ENST00000526313 MAP4K4O95819 1239 aaPredicted RBP19.39■□□□□ 0.69
USH1C-204ENST00000526313 MCM4P33991 863 aa19.39■□□□□ 0.69
USH1C-204ENST00000526313 GSE1Q14687 1217 aa19.39■□□□□ 0.69
USH1C-204ENST00000526313 IL27Q8NEV9 243 aa19.39■□□□□ 0.69
USH1C-204ENST00000526313 MCCP23508 829 aa19.39■□□□□ 0.69
USH1C-204ENST00000526313 ANO2Q9NQ90 1003 aa19.39■□□□□ 0.69
USH1C-204ENST00000526313 ATG3Q9NT62 314 aa19.39■□□□□ 0.69
USH1C-204ENST00000526313 TJP1Q07157 1748 aa19.38■□□□□ 0.69
USH1C-204ENST00000526313 RAB3GAP1Q15042 981 aa19.38■□□□□ 0.69
USH1C-204ENST00000526313 CCDC191Q8NCU4 936 aa19.38■□□□□ 0.69
USH1C-204ENST00000526313 FOXO4P98177 505 aa19.37■□□□□ 0.69
USH1C-204ENST00000526313 KLHDC4Q8TBB5 520 aa19.37■□□□□ 0.69
USH1C-204ENST00000526313 JARID2Q92833 1246 aaPredicted RBP19.37■□□□□ 0.69
USH1C-204ENST00000526313 CWC25Q9NXE8 425 aaPredicted RBP19.37■□□□□ 0.69
USH1C-204ENST00000526313 ASAP1Q9ULH1 1129 aa19.37■□□□□ 0.69
USH1C-204ENST00000526313 BCL9O00512 1426 aa19.37■□□□□ 0.69
USH1C-204ENST00000526313 HSPA4P34932 840 aa19.37■□□□□ 0.69
USH1C-204ENST00000526313 EVI5LQ96CN4 794 aa19.37■□□□□ 0.69
USH1C-204ENST00000526313 PALD1Q9ULE6 856 aa19.37■□□□□ 0.69
USH1C-204ENST00000526313 WNK3Q9BYP7 1800 aa19.37■□□□□ 0.69
USH1C-204ENST00000526313 ISCA1Q9BUE6 129 aa19.36■□□□□ 0.69
USH1C-204ENST00000526313 LSG1Q9H089 658 aaKnown RBP19.36■□□□□ 0.69
USH1C-204ENST00000526313 SIL1Q9H173 461 aa19.36■□□□□ 0.69
USH1C-204ENST00000526313 RAD50Q92878 1312 aa19.35■□□□□ 0.69
USH1C-204ENST00000526313 HSP90AA1P07900 732 aaKnown RBP19.35■□□□□ 0.69
USH1C-204ENST00000526313 TRIM28Q13263 835 aaKnown RBP19.35■□□□□ 0.69
USH1C-204ENST00000526313 CCDC8Q9H0W5 538 aaPredicted RBP19.34■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms