RNA–Protein interactions for RNA: ENST00000526000.5

CD44-221, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 722 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-221ENST00000526000 NIP7Q9Y221 180 aaKnown RBP eCLIP8.81□□□□□ -1
CD44-221ENST00000526000 NBPF26B4DH59 902 aa8.8□□□□□ -1
CD44-221ENST00000526000 SNRPA1P09661 255 aaKnown RBP8.8□□□□□ -1
CD44-221ENST00000526000 GTF2E1P29083 439 aaPredicted RBP8.8□□□□□ -1
CD44-221ENST00000526000 HLFQ16534 295 aa8.8□□□□□ -1
CD44-221ENST00000526000 STYK1Q6J9G0 422 aa8.8□□□□□ -1
CD44-221ENST00000526000 NBPF10Q6P3W6 841 aaKnown RBP8.8□□□□□ -1
CD44-221ENST00000526000 NBPF15Q8N660 670 aa8.8□□□□□ -1
CD44-221ENST00000526000 RRP7AQ9Y3A4 280 aaKnown RBP8.8□□□□□ -1
CD44-221ENST00000526000 NUTM1Q86Y26 1132 aa8.79□□□□□ -1
CD44-221ENST00000526000 SYNE4Q8N205 404 aa8.79□□□□□ -1
CD44-221ENST00000526000 C7orf43Q8WVR3 580 aa8.79□□□□□ -1
CD44-221ENST00000526000 CFAP53Q96M91 514 aa8.79□□□□□ -1
CD44-221ENST00000526000 RSPH6AQ9H0K4 717 aa8.79□□□□□ -1
CD44-221ENST00000526000 TAF1DQ9H5J8 278 aaPredicted RBP8.79□□□□□ -1
CD44-221ENST00000526000 PDZRN3Q9UPQ7 1066 aa8.79□□□□□ -1
CD44-221ENST00000526000 NUDCQ9Y266 331 aa8.79□□□□□ -1
CD44-221ENST00000526000 SBF1O95248 1867 aa8.79□□□□□ -1
CD44-221ENST00000526000 BRCA1P38398 1863 aaKnown RBP8.79□□□□□ -1
CD44-221ENST00000526000 ZC3H4Q9UPT8 1303 aaKnown RBP8.79□□□□□ -1
CD44-221ENST00000526000 SCN11AQ9UI33 1791 aa8.78□□□□□ -1
CD44-221ENST00000526000 ZNF831Q5JPB2 1677 aa8.78□□□□□ -1
CD44-221ENST00000526000 AFDNP55196 1824 aaKnown RBP8.78□□□□□ -1
CD44-221ENST00000526000 ARFGEF1Q9Y6D6 1849 aa8.78□□□□□ -1
CD44-221ENST00000526000 WDR90Q96KV7 1748 aa8.78□□□□□ -1
CD44-221ENST00000526000 FOXN1O15353 648 aa8.78□□□□□ -1
CD44-221ENST00000526000 NPR1P16066 1061 aa8.78□□□□□ -1
CD44-221ENST00000526000 GPTP24298 496 aa8.78□□□□□ -1
CD44-221ENST00000526000 FMR1Q06787 632 aaKnown RBP eCLIP8.78□□□□□ -1
CD44-221ENST00000526000 CCDC93Q567U6 631 aa8.78□□□□□ -1
CD44-221ENST00000526000 MAP1SQ66K74 1059 aaPredicted RBP8.78□□□□□ -1
CD44-221ENST00000526000 TPTE2Q6XPS3 522 aa8.78□□□□□ -1
CD44-221ENST00000526000 SLC51AQ86UW1 340 aa8.78□□□□□ -1
CD44-221ENST00000526000 GJA3Q9Y6H8 435 aa8.78□□□□□ -1
CD44-221ENST00000526000 ADAMTS7Q9UKP4 1686 aa8.78□□□□□ -1
CD44-221ENST00000526000 ZNF541Q9H0D2 1346 aa8.78□□□□□ -1
CD44-221ENST00000526000 MYL6BP14649 208 aa8.77□□□□□ -1.01
CD44-221ENST00000526000 PPP2R1AP30153 589 aa8.77□□□□□ -1.01
CD44-221ENST00000526000 VEGFBP49765 207 aa8.77□□□□□ -1.01
CD44-221ENST00000526000 GRM1Q13255 1194 aa8.77□□□□□ -1.01
CD44-221ENST00000526000 TAF7Q15545 349 aaPredicted RBP8.77□□□□□ -1.01
CD44-221ENST00000526000 ZNF428Q96B54 188 aa8.77□□□□□ -1.01
CD44-221ENST00000526000 THUMPD2Q9BTF0 503 aaKnown RBP8.77□□□□□ -1.01
CD44-221ENST00000526000 CREBZFQ9NS37 354 aa8.77□□□□□ -1.01
CD44-221ENST00000526000 EPHX2P34913 555 aa8.76□□□□□ -1.01
CD44-221ENST00000526000 FKBP4Q02790 459 aaKnown RBP eCLIP8.76□□□□□ -1.01
CD44-221ENST00000526000 SOGA3Q5TF21 947 aa8.76□□□□□ -1.01
CD44-221ENST00000526000 CLEC4GQ6UXB4 293 aa8.76□□□□□ -1.01
CD44-221ENST00000526000 TTLL7Q6ZT98 887 aa8.76□□□□□ -1.01
CD44-221ENST00000526000 LDHDQ86WU2 507 aa8.76□□□□□ -1.01
CD44-221ENST00000526000 CNTROBQ8N137 903 aa8.76□□□□□ -1.01
CD44-221ENST00000526000 HACL1Q9UJ83 578 aa8.76□□□□□ -1.01
CD44-221ENST00000526000 ZNF652Q9Y2D9 606 aa8.76□□□□□ -1.01
CD44-221ENST00000526000 RNF123Q5XPI4 1314 aa8.76□□□□□ -1.01
CD44-221ENST00000526000 LTBP3Q9NS15 1303 aa8.76□□□□□ -1.01
CD44-221ENST00000526000 MRC1P22897 1456 aa8.76□□□□□ -1.01
CD44-221ENST00000526000 IQCA1LA6NCM1 817 aa8.75□□□□□ -1.01
CD44-221ENST00000526000 TMEM88BA6NKF7 163 aa8.75□□□□□ -1.01
CD44-221ENST00000526000 ITGBL1O95965 494 aaPredicted RBP8.75□□□□□ -1.01
CD44-221ENST00000526000 ZEB1P37275 1124 aaPredicted RBP8.75□□□□□ -1.01
CD44-221ENST00000526000 IARSP41252 1262 aaKnown RBP8.75□□□□□ -1.01
CD44-221ENST00000526000 LBX1P52954 281 aa8.75□□□□□ -1.01
CD44-221ENST00000526000 PAXIP1Q6ZW49 1069 aaPredicted RBP8.75□□□□□ -1.01
CD44-221ENST00000526000 ZBTB3Q9H5J0 574 aa8.75□□□□□ -1.01
CD44-221ENST00000526000 SLX4Q8IY92 1834 aa8.75□□□□□ -1.01
CD44-221ENST00000526000 CCDC88AQ3V6T2 1871 aa8.74□□□□□ -1.01
CD44-221ENST00000526000 CEMIPQ8WUJ3 1361 aa8.74□□□□□ -1.01
CD44-221ENST00000526000 ALDH1B1P30837 517 aa8.74□□□□□ -1.01
CD44-221ENST00000526000 EPS15P42566 896 aa8.74□□□□□ -1.01
CD44-221ENST00000526000 DEFB115Q30KQ5 88 aa8.74□□□□□ -1.01
CD44-221ENST00000526000 SUSD4Q5VX71 490 aa8.74□□□□□ -1.01
CD44-221ENST00000526000 RTKN2Q8IZC4 609 aa8.74□□□□□ -1.01
CD44-221ENST00000526000 JDP2Q8WYK2 163 aa8.74□□□□□ -1.01
CD44-221ENST00000526000 AIDAQ96BJ3 306 aa8.74□□□□□ -1.01
CD44-221ENST00000526000 ABT1Q9ULW3 272 aaKnown RBP8.74□□□□□ -1.01
CD44-221ENST00000526000 COL3A1P02461 1466 aaPredicted RBP8.73□□□□□ -1.01
CD44-221ENST00000526000 KLRG2A4D1S0 409 aaPredicted RBP8.73□□□□□ -1.01
CD44-221ENST00000526000 ANXA1P04083 346 aa8.73□□□□□ -1.01
CD44-221ENST00000526000 EIF2S2P20042 333 aaKnown RBP8.73□□□□□ -1.01
CD44-221ENST00000526000 EIF6P56537 245 aaKnown RBP8.73□□□□□ -1.01
CD44-221ENST00000526000 C3orf67Q6ZVT6 689 aa8.73□□□□□ -1.01
CD44-221ENST00000526000 LARGE2Q8N3Y3 721 aa8.73□□□□□ -1.01
CD44-221ENST00000526000 NECTIN2Q92692 538 aa8.73□□□□□ -1.01
CD44-221ENST00000526000 RPGRQ92834 1020 aaKnown RBP8.73□□□□□ -1.01
CD44-221ENST00000526000 L3MBTL3Q96JM7 780 aaPredicted RBP8.73□□□□□ -1.01
CD44-221ENST00000526000 PASKQ96RG2 1323 aa8.73□□□□□ -1.01
CD44-221ENST00000526000 CNTNAP1P78357 1384 aa8.73□□□□□ -1.01
CD44-221ENST00000526000 NRXN2Q9P2S2 1712 aa8.72□□□□□ -1.01
CD44-221ENST00000526000 FZD9O00144 591 aa8.72□□□□□ -1.01
CD44-221ENST00000526000 TRAF5O00463 557 aa8.72□□□□□ -1.01
CD44-221ENST00000526000 NEFMP07197 916 aa8.72□□□□□ -1.01
CD44-221ENST00000526000 CTCFP49711 727 aaPredicted RBP8.72□□□□□ -1.01
CD44-221ENST00000526000 EIF4A1P60842 406 aaKnown RBP8.72□□□□□ -1.01
CD44-221ENST00000526000 ANKRD31Q8N7Z5 1873 aa8.72□□□□□ -1.01
CD44-221ENST00000526000 TNRC6CQ9HCJ0 1690 aaKnown RBP8.72□□□□□ -1.01
CD44-221ENST00000526000 AIMP1Q12904 312 aaKnown RBP8.71□□□□□ -1.02
CD44-221ENST00000526000 KIF6Q6ZMV9 814 aa8.71□□□□□ -1.02
CD44-221ENST00000526000 PNMA8AQ86V59 439 aaPredicted RBP8.71□□□□□ -1.02
CD44-221ENST00000526000 RBM17Q96I25 401 aaKnown RBP8.71□□□□□ -1.02
CD44-221ENST00000526000 WBP1LQ9NX94 342 aa8.71□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms