RNA–Protein interactions for RNA: ENST00000524006.5

SPIDR-222, Transcript of scaffold protein involved in DNA repair, human

TSL 5

Gene SPIDR, Length 970 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPIDR-222	ENST00000524006	TNS1	Q9HBL0	1735 aa	Known RBP	13.26	□□□□□ -0.29
SPIDR-222	ENST00000524006	C9orf78	Q9NZ63	289 aa	Predicted RBP	13.26	□□□□□ -0.29
SPIDR-222	ENST00000524006	PI4KAP2	A4QPH2	592 aa		13.25	□□□□□ -0.29
SPIDR-222	ENST00000524006	SMARCA5	O60264	1052 aa	Predicted RBP	13.25	□□□□□ -0.29
SPIDR-222	ENST00000524006	TRIM37	O94972	964 aa		13.25	□□□□□ -0.29
SPIDR-222	ENST00000524006	ZNF790	Q6PG37	636 aa		13.25	□□□□□ -0.29
SPIDR-222	ENST00000524006	FAM196A	Q6ZSG2	479 aa		13.25	□□□□□ -0.29
SPIDR-222	ENST00000524006	PI4KAP1	Q8N8J0	262 aa		13.25	□□□□□ -0.29
SPIDR-222	ENST00000524006	FMNL2	Q96PY5	1086 aa		13.25	□□□□□ -0.29
SPIDR-222	ENST00000524006	EXOC6B	Q9Y2D4	811 aa		13.25	□□□□□ -0.29
SPIDR-222	ENST00000524006	MAP3K2	Q9Y2U5	619 aa		13.25	□□□□□ -0.29
SPIDR-222	ENST00000524006	ADCY9	O60503	1353 aa		13.24	□□□□□ -0.29
SPIDR-222	ENST00000524006	IBTK	Q9P2D0	1353 aa	Predicted RBP	13.24	□□□□□ -0.29
SPIDR-222	ENST00000524006	RAB11FIP3	O75154	756 aa		13.24	□□□□□ -0.29
SPIDR-222	ENST00000524006	LARP1	Q6PKG0	1096 aa	Known RBP	13.24	□□□□□ -0.29
SPIDR-222	ENST00000524006	KSR2	Q6VAB6	950 aa		13.24	□□□□□ -0.29
SPIDR-222	ENST00000524006	BARGIN	Q6ZT62	677 aa		13.24	□□□□□ -0.29
SPIDR-222	ENST00000524006	RIC3	Q7Z5B4	369 aa		13.24	□□□□□ -0.29
SPIDR-222	ENST00000524006	DDX21	Q9NR30	783 aa	Known RBP eCLIP	13.24	□□□□□ -0.29
SPIDR-222	ENST00000524006	TOGARAM1	Q9Y4F4	1720 aa		13.24	□□□□□ -0.29
SPIDR-222	ENST00000524006	REC8	O95072	547 aa		13.23	□□□□□ -0.29
SPIDR-222	ENST00000524006	ANXA1	P04083	346 aa		13.23	□□□□□ -0.29
SPIDR-222	ENST00000524006	HSP90AA1	P07900	732 aa	Known RBP	13.23	□□□□□ -0.29
SPIDR-222	ENST00000524006	SNRPA1	P09661	255 aa	Known RBP	13.23	□□□□□ -0.29
SPIDR-222	ENST00000524006	IL2RB	P14784	551 aa		13.23	□□□□□ -0.29
SPIDR-222	ENST00000524006	GPATCH3	Q96I76	525 aa		13.23	□□□□□ -0.29
SPIDR-222	ENST00000524006	HEG1	Q9ULI3	1381 aa		13.22	□□□□□ -0.29
SPIDR-222	ENST00000524006	UTRN	P46939	3433 aa		13.22	□□□□□ -0.29
SPIDR-222	ENST00000524006	AOX1	Q06278	1338 aa		13.22	□□□□□ -0.29
SPIDR-222	ENST00000524006	SRGAP3	O43295	1099 aa		13.22	□□□□□ -0.29
SPIDR-222	ENST00000524006	APBA3	O96018	575 aa		13.22	□□□□□ -0.29
SPIDR-222	ENST00000524006	MX1	P20591	662 aa		13.22	□□□□□ -0.29
SPIDR-222	ENST00000524006	RBM25	P49756	843 aa	Known RBP	13.22	□□□□□ -0.29
SPIDR-222	ENST00000524006	AIMP1	Q12904	312 aa	Known RBP	13.22	□□□□□ -0.29
SPIDR-222	ENST00000524006	BEND3	Q5T5X7	828 aa		13.22	□□□□□ -0.29
SPIDR-222	ENST00000524006	NFATC2IP	Q8NCF5	419 aa		13.22	□□□□□ -0.29
SPIDR-222	ENST00000524006	ZCRB1	Q8TBF4	217 aa	Known RBP	13.22	□□□□□ -0.29
SPIDR-222	ENST00000524006	USP44	Q9H0E7	712 aa		13.22	□□□□□ -0.29
SPIDR-222	ENST00000524006	SURF6	O75683	361 aa	Known RBP	13.21	□□□□□ -0.29
SPIDR-222	ENST00000524006	GSPT1	P15170	499 aa	Known RBP	13.21	□□□□□ -0.29
SPIDR-222	ENST00000524006	MCC	P23508	829 aa		13.21	□□□□□ -0.29
SPIDR-222	ENST00000524006	SLC39A6	Q13433	755 aa		13.21	□□□□□ -0.29
SPIDR-222	ENST00000524006	PPP1R42	Q7Z4L9	355 aa		13.21	□□□□□ -0.29
SPIDR-222	ENST00000524006	ERC1	Q8IUD2	1116 aa		13.21	□□□□□ -0.29
SPIDR-222	ENST00000524006	SLK	Q9H2G2	1235 aa	Predicted RBP	13.21	□□□□□ -0.29
SPIDR-222	ENST00000524006	ANKRD36C	Q5JPF3	1778 aa		13.2	□□□□□ -0.3
SPIDR-222	ENST00000524006	DOT1L	Q8TEK3	1739 aa		13.2	□□□□□ -0.3
SPIDR-222	ENST00000524006	PNMA6E	A0A0J9YXQ4	647 aa		13.2	□□□□□ -0.3
SPIDR-222	ENST00000524006	TRIM6-TRIM34	B2RNG4	842 aa		13.2	□□□□□ -0.3
SPIDR-222	ENST00000524006	MYL6B	P14649	208 aa		13.2	□□□□□ -0.3
SPIDR-222	ENST00000524006	LINS1	Q8NG48	757 aa		13.2	□□□□□ -0.3
SPIDR-222	ENST00000524006	SSH3	Q8TE77	659 aa		13.2	□□□□□ -0.3
SPIDR-222	ENST00000524006	KIF1BP	Q96EK5	621 aa		13.2	□□□□□ -0.3
SPIDR-222	ENST00000524006	CARD10	Q9BWT7	1032 aa		13.2	□□□□□ -0.3
SPIDR-222	ENST00000524006	ERBB4	Q15303	1308 aa		13.19	□□□□□ -0.3
SPIDR-222	ENST00000524006	CYP27B1	O15528	508 aa		13.19	□□□□□ -0.3
SPIDR-222	ENST00000524006	SDS	P20132	328 aa		13.19	□□□□□ -0.3
SPIDR-222	ENST00000524006	PDE1A	P54750	535 aa		13.19	□□□□□ -0.3
SPIDR-222	ENST00000524006	C16orf71	Q8IYS4	520 aa	Predicted RBP	13.19	□□□□□ -0.3
SPIDR-222	ENST00000524006	OTUD7A	Q8TE49	926 aa	Predicted RBP	13.19	□□□□□ -0.3
SPIDR-222	ENST00000524006	TBC1D2	Q9BYX2	928 aa		13.19	□□□□□ -0.3
SPIDR-222	ENST00000524006	MYH3	P11055	1940 aa		13.18	□□□□□ -0.3
SPIDR-222	ENST00000524006	ERVV-2	B6SEH9	535 aa		13.18	□□□□□ -0.3
SPIDR-222	ENST00000524006	GRM8	O00222	908 aa		13.18	□□□□□ -0.3
SPIDR-222	ENST00000524006	ERC2	O15083	957 aa		13.18	□□□□□ -0.3
SPIDR-222	ENST00000524006	PROSER3	Q2NL68	480 aa		13.18	□□□□□ -0.3
SPIDR-222	ENST00000524006	ZNF496	Q96IT1	587 aa	Predicted RBP	13.18	□□□□□ -0.3
SPIDR-222	ENST00000524006	OSBPL3	Q9H4L5	887 aa		13.18	□□□□□ -0.3
SPIDR-222	ENST00000524006	TJP1	Q07157	1748 aa		13.18	□□□□□ -0.3
SPIDR-222	ENST00000524006	POLA2	Q14181	598 aa		13.17	□□□□□ -0.3
SPIDR-222	ENST00000524006	RABEP1	Q15276	862 aa		13.17	□□□□□ -0.3
SPIDR-222	ENST00000524006	XAGE3	Q8WTP9	111 aa		13.17	□□□□□ -0.3
SPIDR-222	ENST00000524006	RILPL2	Q969X0	211 aa		13.17	□□□□□ -0.3
SPIDR-222	ENST00000524006	THRAP3	Q9Y2W1	955 aa	Known RBP	13.17	□□□□□ -0.3
SPIDR-222	ENST00000524006	PRAMEF22	A3QJZ6	481 aa		13.16	□□□□□ -0.3
SPIDR-222	ENST00000524006	NBPF7	P0C2Y1	421 aa	Predicted RBP	13.16	□□□□□ -0.3
SPIDR-222	ENST00000524006	NFKBIB	Q15653	356 aa		13.16	□□□□□ -0.3
SPIDR-222	ENST00000524006	DDX54	Q8TDD1	881 aa	Known RBP	13.16	□□□□□ -0.3
SPIDR-222	ENST00000524006	MYD88	Q99836	296 aa		13.16	□□□□□ -0.3
SPIDR-222	ENST00000524006	TMOD3	Q9NYL9	352 aa		13.16	□□□□□ -0.3
SPIDR-222	ENST00000524006	KCP	Q6ZWJ8	1503 aa		13.16	□□□□□ -0.3
SPIDR-222	ENST00000524006	RREB1	Q92766	1687 aa		13.15	□□□□□ -0.3
SPIDR-222	ENST00000524006	CWF19L2	Q2TBE0	894 aa	Known RBP	13.15	□□□□□ -0.3
SPIDR-222	ENST00000524006	CNTROB	Q8N137	903 aa		13.15	□□□□□ -0.3
SPIDR-222	ENST00000524006	CLASRP	Q8N2M8	674 aa	Known RBP	13.15	□□□□□ -0.3
SPIDR-222	ENST00000524006	RHPN1	Q8TCX5	695 aa		13.15	□□□□□ -0.3
SPIDR-222	ENST00000524006	SNX21	Q969T3	373 aa		13.15	□□□□□ -0.3
SPIDR-222	ENST00000524006	IL1RAPL2	Q9NP60	686 aa		13.15	□□□□□ -0.3
SPIDR-222	ENST00000524006	ST18	O60284	1047 aa		13.14	□□□□□ -0.31
SPIDR-222	ENST00000524006	IFIT2	P09913	472 aa	Known RBP	13.14	□□□□□ -0.31
SPIDR-222	ENST00000524006	G3BP1	Q13283	466 aa	Known RBP eCLIP	13.14	□□□□□ -0.31
SPIDR-222	ENST00000524006	MTX1	Q13505	466 aa		13.14	□□□□□ -0.31
SPIDR-222	ENST00000524006	COPS6	Q7L5N1	327 aa		13.14	□□□□□ -0.31
SPIDR-222	ENST00000524006	SPRYD3	Q8NCJ5	442 aa		13.14	□□□□□ -0.31
SPIDR-222	ENST00000524006	METTL22	Q9BUU2	404 aa	Predicted RBP	13.14	□□□□□ -0.31
SPIDR-222	ENST00000524006	CHMP5	Q9NZZ3	219 aa		13.14	□□□□□ -0.31
SPIDR-222	ENST00000524006	ANKRD13D	Q6ZTN6	518 aa		13.13	□□□□□ -0.31
SPIDR-222	ENST00000524006	NUTM1	Q86Y26	1132 aa		13.13	□□□□□ -0.31
SPIDR-222	ENST00000524006	STAP2	Q9UGK3	403 aa		13.13	□□□□□ -0.31
SPIDR-222	ENST00000524006	TTC41P	Q6P2S7	1318 aa		13.13	□□□□□ -0.31

Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms