RNA–Protein interactions for RNA: ENST00000520857.5

TRAPPC9-208, Transcript of trafficking protein particle complex 9, humanhuman

TSL 1 (best)

Gene TRAPPC9, Length 3,693 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC9-208ENST00000520857 PPLO60437 1756 aa15.19■□□□□ 0.02
TRAPPC9-208ENST00000520857 KIF20AO95235 890 aa15.19■□□□□ 0.02
TRAPPC9-208ENST00000520857 HSP90AB4PQ58FF6 505 aa15.19■□□□□ 0.02
TRAPPC9-208ENST00000520857 CBX8Q9HC52 389 aa15.19■□□□□ 0.02
TRAPPC9-208ENST00000520857 STAP2Q9UGK3 403 aa15.19■□□□□ 0.02
TRAPPC9-208ENST00000520857 HTATSF1O43719 755 aaKnown RBP15.19■□□□□ 0.02
TRAPPC9-208ENST00000520857 PTH1RQ03431 593 aa15.19■□□□□ 0.02
TRAPPC9-208ENST00000520857 MAPK8IP2Q13387 824 aaPredicted RBP15.19■□□□□ 0.02
TRAPPC9-208ENST00000520857 CDC37L1Q7L3B6 337 aa15.19■□□□□ 0.02
TRAPPC9-208ENST00000520857 FSD1Q9BTV5 496 aa15.19■□□□□ 0.02
TRAPPC9-208ENST00000520857 MAP3K19Q56UN5 1328 aa15.19■□□□□ 0.02
TRAPPC9-208ENST00000520857 AACSQ86V21 672 aa15.19■□□□□ 0.02
TRAPPC9-208ENST00000520857 TMEM87AQ8NBN3 555 aa15.19■□□□□ 0.02
TRAPPC9-208ENST00000520857 ARAP3Q8WWN8 1544 aa15.18■□□□□ 0.02
TRAPPC9-208ENST00000520857 PPFIA3O75145 1194 aa15.18■□□□□ 0.02
TRAPPC9-208ENST00000520857 GTF2F1P35269 517 aaKnown RBP eCLIP15.18■□□□□ 0.022e-7■■■■■ 33.7
TRAPPC9-208ENST00000520857 PPP6R1Q9UPN7 881 aa15.18■□□□□ 0.02
TRAPPC9-208ENST00000520857 ARHGEF28Q8N1W1 1705 aaKnown RBP15.18■□□□□ 0.02
TRAPPC9-208ENST00000520857 PTPRMP28827 1452 aa15.18■□□□□ 0.02
TRAPPC9-208ENST00000520857 TTC21BQ7Z4L5 1316 aa15.18■□□□□ 0.02
TRAPPC9-208ENST00000520857 ME3Q16798 604 aa15.18■□□□□ 0.02
TRAPPC9-208ENST00000520857 LSG1Q9H089 658 aaKnown RBP15.18■□□□□ 0.02
TRAPPC9-208ENST00000520857 SIL1Q9H173 461 aa15.18■□□□□ 0.02
TRAPPC9-208ENST00000520857 ACEP12821 1306 aa15.18■□□□□ 0.02
TRAPPC9-208ENST00000520857 SSH2Q76I76 1423 aa15.18■□□□□ 0.02
TRAPPC9-208ENST00000520857 PSMA5P28066 241 aa15.18■□□□□ 0.02
TRAPPC9-208ENST00000520857 RNF20Q5VTR2 975 aa15.18■□□□□ 0.02
TRAPPC9-208ENST00000520857 CPSF1Q10570 1443 aaKnown RBP15.17■□□□□ 0.02
TRAPPC9-208ENST00000520857 GNAT3A8MTJ3 354 aa15.17■□□□□ 0.02
TRAPPC9-208ENST00000520857 SCAND2PQ9GZW5 306 aaPredicted RBP15.17■□□□□ 0.02
TRAPPC9-208ENST00000520857 RBM8AQ9Y5S9 174 aaKnown RBP15.17■□□□□ 0.02
TRAPPC9-208ENST00000520857 PI4KAP2A4QPH2 592 aa15.17■□□□□ 0.02
TRAPPC9-208ENST00000520857 NBPF7P0C2Y1 421 aaPredicted RBP15.17■□□□□ 0.02
TRAPPC9-208ENST00000520857 PTPN14Q15678 1187 aa15.17■□□□□ 0.02
TRAPPC9-208ENST00000520857 CEP135Q66GS9 1140 aa15.17■□□□□ 0.02
TRAPPC9-208ENST00000520857 PI4KAP1Q8N8J0 262 aa15.17■□□□□ 0.02
TRAPPC9-208ENST00000520857 HYPKQ9NX55 129 aa15.17■□□□□ 0.02
TRAPPC9-208ENST00000520857 IFT172Q9UG01 1749 aa15.17■□□□□ 0.02
TRAPPC9-208ENST00000520857 FMNL2Q96PY5 1086 aa15.16■□□□□ 0.02
TRAPPC9-208ENST00000520857 PA2G4Q9UQ80 394 aaKnown RBP15.16■□□□□ 0.02
TRAPPC9-208ENST00000520857 LMTK2Q8IWU2 1503 aa15.16■□□□□ 0.02
TRAPPC9-208ENST00000520857 SMTNL1A8MU46 457 aa15.16■□□□□ 0.02
TRAPPC9-208ENST00000520857 USHBP1Q8N6Y0 703 aa15.16■□□□□ 0.02
TRAPPC9-208ENST00000520857 CCDC8Q9H0W5 538 aaPredicted RBP15.16■□□□□ 0.02
TRAPPC9-208ENST00000520857 OGFRQ9NZT2 677 aa15.16■□□□□ 0.02
TRAPPC9-208ENST00000520857 CDK12Q9NYV4 1490 aaPredicted RBP15.16■□□□□ 0.02
TRAPPC9-208ENST00000520857 NLRP6P59044 892 aa15.16■□□□□ 0.02
TRAPPC9-208ENST00000520857 MRVI1Q9Y6F6 885 aa15.16■□□□□ 0.02
TRAPPC9-208ENST00000520857 TCHHQ07283 1943 aa15.16■□□□□ 0.02
TRAPPC9-208ENST00000520857 NEXMIFQ5QGS0 1516 aa15.16■□□□□ 0.02
TRAPPC9-208ENST00000520857 GORABQ5T7V8 394 aa15.15■□□□□ 0.02
TRAPPC9-208ENST00000520857 VPS53Q5VIR6 699 aa15.15■□□□□ 0.02
TRAPPC9-208ENST00000520857 FEZ1Q99689 392 aa15.15■□□□□ 0.02
TRAPPC9-208ENST00000520857 BOLA2Q9H3K6 86 aa15.15■□□□□ 0.02
TRAPPC9-208ENST00000520857 NCBP1Q09161 790 aaKnown RBP15.15■□□□□ 0.02
TRAPPC9-208ENST00000520857 TTC14Q96N46 770 aa15.15■□□□□ 0.02
TRAPPC9-208ENST00000520857 DDX19AQ9NUU7 478 aaKnown RBP15.15■□□□□ 0.02
TRAPPC9-208ENST00000520857 G3BP1Q13283 466 aaKnown RBP eCLIP15.15■□□□□ 0.02
TRAPPC9-208ENST00000520857 ZSCAN25Q6NSZ9 544 aa15.15■□□□□ 0.02
TRAPPC9-208ENST00000520857 ECHDC1Q9NTX5 307 aa15.15■□□□□ 0.02
TRAPPC9-208ENST00000520857 KIDINS220Q9ULH0 1771 aa15.15■□□□□ 0.02
TRAPPC9-208ENST00000520857 MAP2P11137 1827 aaKnown RBP15.14■□□□□ 0.01
TRAPPC9-208ENST00000520857 ZNF75DP51815 510 aa15.14■□□□□ 0.01
TRAPPC9-208ENST00000520857 LARP1Q6PKG0 1096 aaKnown RBP15.14■□□□□ 0.01
TRAPPC9-208ENST00000520857 CCDC73Q6ZRK6 1079 aa15.14■□□□□ 0.01
TRAPPC9-208ENST00000520857 EYA1Q99502 592 aa15.14■□□□□ 0.01
TRAPPC9-208ENST00000520857 AATKQ6ZMQ8 1374 aa15.14■□□□□ 0.01
TRAPPC9-208ENST00000520857 AIMP1Q12904 312 aaKnown RBP15.14■□□□□ 0.01
TRAPPC9-208ENST00000520857 SSH3Q8TE77 659 aa15.14■□□□□ 0.01
TRAPPC9-208ENST00000520857 TEFQ10587 303 aa15.14■□□□□ 0.01
TRAPPC9-208ENST00000520857 TPCN1Q9ULQ1 816 aa15.14■□□□□ 0.01
TRAPPC9-208ENST00000520857 NRDCO43847 1150 aa15.13■□□□□ 0.01
TRAPPC9-208ENST00000520857 SKILP12757 684 aa15.13■□□□□ 0.01
TRAPPC9-208ENST00000520857 HDGFP51858 240 aaKnown RBP15.13■□□□□ 0.01
TRAPPC9-208ENST00000520857 HOMER1Q86YM7 354 aa15.13■□□□□ 0.01
TRAPPC9-208ENST00000520857 PI4K2BQ8TCG2 481 aa15.13■□□□□ 0.01
TRAPPC9-208ENST00000520857 BBXQ8WY36 941 aaPredicted RBP15.13■□□□□ 0.01
TRAPPC9-208ENST00000520857 FAM227BQ96M60 508 aa15.13■□□□□ 0.01
TRAPPC9-208ENST00000520857 TRERF1Q96PN7 1200 aa15.13■□□□□ 0.01
TRAPPC9-208ENST00000520857 PAXBP1Q9Y5B6 917 aa15.13■□□□□ 0.01
TRAPPC9-208ENST00000520857 KNDC1Q76NI1 1749 aa15.13■□□□□ 0.01
TRAPPC9-208ENST00000520857 CREB3L3Q68CJ9 461 aa15.13■□□□□ 0.01
TRAPPC9-208ENST00000520857 DNAAF4Q8WXU2 420 aa15.13■□□□□ 0.01
TRAPPC9-208ENST00000520857 SALL3Q9BXA9 1300 aa15.13■□□□□ 0.01
TRAPPC9-208ENST00000520857 NPHP3Q7Z494 1330 aa15.13■□□□□ 0.01
TRAPPC9-208ENST00000520857 CACTINQ8WUQ7 758 aaKnown RBP15.13■□□□□ 0.01
TRAPPC9-208ENST00000520857 SDF4Q9BRK5 362 aa15.13■□□□□ 0.01
TRAPPC9-208ENST00000520857 KINO60870 393 aaKnown RBP15.12■□□□□ 0.01
TRAPPC9-208ENST00000520857 NR1I2O75469 434 aa15.12■□□□□ 0.01
TRAPPC9-208ENST00000520857 USP16Q9Y5T5 823 aa15.12■□□□□ 0.01
TRAPPC9-208ENST00000520857 ATP7BP35670 1465 aa15.12■□□□□ 0.01
TRAPPC9-208ENST00000520857 A0A087WWV3 80 aa15.12■□□□□ 0.01
TRAPPC9-208ENST00000520857 SYTL4Q96C24 671 aaPredicted RBP15.12■□□□□ 0.01
TRAPPC9-208ENST00000520857 AOX1Q06278 1338 aa15.12■□□□□ 0.01
TRAPPC9-208ENST00000520857 SF3A1Q15459 793 aaKnown RBP15.12■□□□□ 0.01
TRAPPC9-208ENST00000520857 LRRC2Q9BYS8 371 aa15.12■□□□□ 0.01
TRAPPC9-208ENST00000520857 CHPF2Q9P2E5 772 aa15.12■□□□□ 0.01
TRAPPC9-208ENST00000520857 NMIQ13287 307 aaPredicted RBP15.11■□□□□ 0.01
TRAPPC9-208ENST00000520857 FUCA2Q9BTY2 467 aa15.11■□□□□ 0.01
TRAPPC9-208ENST00000520857 CCDC171Q6TFL3 1326 aa15.11■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms