RNA–Protein interactions for RNA: ENST00000509828.1

MBD4-208, Transcript of methyl-CpG binding domain 4, DNA glycosylase, human

TSL 2

Gene MBD4, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MBD4-208	ENST00000509828	ZNF652	Q9Y2D9	606 aa		13.91	□□□□□ -0.18
MBD4-208	ENST00000509828	MRC1	P22897	1456 aa		13.91	□□□□□ -0.18
MBD4-208	ENST00000509828	TIAM2	Q8IVF5	1701 aa		13.9	□□□□□ -0.18
MBD4-208	ENST00000509828	FAM177B	A6PVY3	158 aa		13.9	□□□□□ -0.18
MBD4-208	ENST00000509828	IL17RE	Q8NFR9	667 aa		13.9	□□□□□ -0.18
MBD4-208	ENST00000509828	TAF1D	Q9H5J8	278 aa	Predicted RBP	13.9	□□□□□ -0.18
MBD4-208	ENST00000509828	PRDM10	Q9NQV6	1147 aa		13.9	□□□□□ -0.18
MBD4-208	ENST00000509828	HACL1	Q9UJ83	578 aa		13.9	□□□□□ -0.18
MBD4-208	ENST00000509828	NRXN2	Q9P2S2	1712 aa		13.9	□□□□□ -0.18
MBD4-208	ENST00000509828	CNTNAP1	P78357	1384 aa		13.89	□□□□□ -0.19
MBD4-208	ENST00000509828	CAMTA2	O94983	1202 aa		13.89	□□□□□ -0.19
MBD4-208	ENST00000509828	NPR1	P16066	1061 aa		13.89	□□□□□ -0.19
MBD4-208	ENST00000509828	VEGFB	P49765	207 aa		13.89	□□□□□ -0.19
MBD4-208	ENST00000509828	TPTE2	Q6XPS3	522 aa		13.89	□□□□□ -0.19
MBD4-208	ENST00000509828	PIP4K2A	P48426	406 aa	Predicted RBP	13.88	□□□□□ -0.19
MBD4-208	ENST00000509828	FKBP4	Q02790	459 aa	Known RBP eCLIP	13.88	□□□□□ -0.19
MBD4-208	ENST00000509828	PNMA8A	Q86V59	439 aa	Predicted RBP	13.88	□□□□□ -0.19
MBD4-208	ENST00000509828	RTKN2	Q8IZC4	609 aa		13.88	□□□□□ -0.19
MBD4-208	ENST00000509828	CCER1	Q8TC90	406 aa	Predicted RBP	13.88	□□□□□ -0.19
MBD4-208	ENST00000509828	RTF1	Q92541	710 aa	Known RBP	13.88	□□□□□ -0.19
MBD4-208	ENST00000509828	ZNF277	Q9NRM2	450 aa	Predicted RBP	13.88	□□□□□ -0.19
MBD4-208	ENST00000509828	CCDC88A	Q3V6T2	1871 aa		13.87	□□□□□ -0.19
MBD4-208	ENST00000509828	DLEC1	Q9Y238	1755 aa		13.87	□□□□□ -0.19
MBD4-208	ENST00000509828	LBX1	P52954	281 aa		13.87	□□□□□ -0.19
MBD4-208	ENST00000509828	DEFB115	Q30KQ5	88 aa		13.87	□□□□□ -0.19
MBD4-208	ENST00000509828	CLEC4G	Q6UXB4	293 aa		13.87	□□□□□ -0.19
MBD4-208	ENST00000509828	PAXIP1	Q6ZW49	1069 aa	Predicted RBP	13.87	□□□□□ -0.19
MBD4-208	ENST00000509828	JDP2	Q8WYK2	163 aa		13.87	□□□□□ -0.19
MBD4-208	ENST00000509828	L3MBTL3	Q96JM7	780 aa	Predicted RBP	13.87	□□□□□ -0.19
MBD4-208	ENST00000509828	ABT1	Q9ULW3	272 aa	Known RBP	13.87	□□□□□ -0.19
MBD4-208	ENST00000509828	KCNQ3	O43525	872 aa		13.86	□□□□□ -0.19
MBD4-208	ENST00000509828	ALDH1B1	P30837	517 aa		13.86	□□□□□ -0.19
MBD4-208	ENST00000509828	EPHX2	P34913	555 aa		13.86	□□□□□ -0.19
MBD4-208	ENST00000509828	CFAP53	Q96M91	514 aa		13.86	□□□□□ -0.19
MBD4-208	ENST00000509828	BEGAIN	Q9BUH8	593 aa		13.86	□□□□□ -0.19
MBD4-208	ENST00000509828	NIP7	Q9Y221	180 aa	Known RBP eCLIP	13.86	□□□□□ -0.19
MBD4-208	ENST00000509828	USP16	Q9Y5T5	823 aa		13.86	□□□□□ -0.19
MBD4-208	ENST00000509828	PASK	Q96RG2	1323 aa		13.86	□□□□□ -0.19
MBD4-208	ENST00000509828	SNRPA1	P09661	255 aa	Known RBP	13.85	□□□□□ -0.19
MBD4-208	ENST00000509828	MAP1S	Q66K74	1059 aa	Predicted RBP	13.85	□□□□□ -0.19
MBD4-208	ENST00000509828	CNTROB	Q8N137	903 aa		13.85	□□□□□ -0.19
MBD4-208	ENST00000509828	SYNE4	Q8N205	404 aa		13.85	□□□□□ -0.19
MBD4-208	ENST00000509828	GJA3	Q9Y6H8	435 aa		13.85	□□□□□ -0.19
MBD4-208	ENST00000509828	ITGBL1	O95965	494 aa	Predicted RBP	13.84	□□□□□ -0.19
MBD4-208	ENST00000509828	LMOD1	P29536	600 aa	Predicted RBP	13.84	□□□□□ -0.19
MBD4-208	ENST00000509828	IARS	P41252	1262 aa	Known RBP	13.84	□□□□□ -0.19
MBD4-208	ENST00000509828	EIF6	P56537	245 aa	Known RBP	13.84	□□□□□ -0.19
MBD4-208	ENST00000509828	MAP2K1	Q02750	393 aa	Predicted RBP	13.84	□□□□□ -0.19
MBD4-208	ENST00000509828	GRM1	Q13255	1194 aa		13.84	□□□□□ -0.19
MBD4-208	ENST00000509828	NUDC	Q9Y266	331 aa		13.84	□□□□□ -0.19
MBD4-208	ENST00000509828	KIF7	Q2M1P5	1343 aa		13.84	□□□□□ -0.19
MBD4-208	ENST00000509828	ZNF541	Q9H0D2	1346 aa		13.84	□□□□□ -0.19
MBD4-208	ENST00000509828	PRKAR2B	P31323	418 aa		13.83	□□□□□ -0.2
MBD4-208	ENST00000509828	OLFM4	Q6UX06	510 aa		13.83	□□□□□ -0.2
MBD4-208	ENST00000509828	C7orf43	Q8WVR3	580 aa		13.83	□□□□□ -0.2
MBD4-208	ENST00000509828	WBP1L	Q9NX94	342 aa		13.83	□□□□□ -0.2
MBD4-208	ENST00000509828	RNF123	Q5XPI4	1314 aa		13.83	□□□□□ -0.2
MBD4-208	ENST00000509828	GPC2	Q8N158	579 aa		13.82	□□□□□ -0.2
MBD4-208	ENST00000509828	NGEF	Q8N5V2	710 aa		13.82	□□□□□ -0.2
MBD4-208	ENST00000509828	TMX4	Q9H1E5	349 aa	Predicted RBP	13.82	□□□□□ -0.2
MBD4-208	ENST00000509828	WDR33	Q9C0J8	1336 aa	Known RBP	13.82	□□□□□ -0.2
MBD4-208	ENST00000509828	SLX4	Q8IY92	1834 aa		13.81	□□□□□ -0.2
MBD4-208	ENST00000509828	FER1L6	Q2WGJ9	1857 aa		13.81	□□□□□ -0.2
MBD4-208	ENST00000509828	ANKRD31	Q8N7Z5	1873 aa		13.81	□□□□□ -0.2
MBD4-208	ENST00000509828	PRAMEF22	A3QJZ6	481 aa		13.81	□□□□□ -0.2
MBD4-208	ENST00000509828	MCM10	Q7L590	875 aa		13.81	□□□□□ -0.2
MBD4-208	ENST00000509828	RPGR	Q92834	1020 aa	Known RBP	13.81	□□□□□ -0.2
MBD4-208	ENST00000509828	PHACTR3	Q96KR7	559 aa		13.81	□□□□□ -0.2
MBD4-208	ENST00000509828	RASSF10	A6NK89	507 aa		13.8	□□□□□ -0.2
MBD4-208	ENST00000509828	PER1	O15534	1290 aa	Predicted RBP	13.8	□□□□□ -0.2
MBD4-208	ENST00000509828	U2AF1L5	P0DN76	240 aa	Predicted RBP	13.8	□□□□□ -0.2
MBD4-208	ENST00000509828	ECE1	P42892	770 aa		13.8	□□□□□ -0.2
MBD4-208	ENST00000509828	U2AF1	Q01081	240 aa	Known RBP eCLIP	13.8	□□□□□ -0.2
MBD4-208	ENST00000509828	ABHD8	Q96I13	439 aa		13.8	□□□□□ -0.2
MBD4-208	ENST00000509828	NYX	Q9GZU5	481 aa		13.8	□□□□□ -0.2
MBD4-208	ENST00000509828	UBR2	Q8IWV8	1755 aa		13.8	□□□□□ -0.2
MBD4-208	ENST00000509828	DICER1	Q9UPY3	1922 aa	Known RBP	13.8	□□□□□ -0.2
MBD4-208	ENST00000509828	SCN7A	Q01118	1682 aa		13.79	□□□□□ -0.2
MBD4-208	ENST00000509828	COL11A2	P13942	1736 aa	Predicted RBP	13.79	□□□□□ -0.2
MBD4-208	ENST00000509828	KLRG2	A4D1S0	409 aa	Predicted RBP	13.79	□□□□□ -0.2
MBD4-208	ENST00000509828	CCDC85C	A6NKD9	419 aa		13.79	□□□□□ -0.2
MBD4-208	ENST00000509828	FZD9	O00144	591 aa		13.79	□□□□□ -0.2
MBD4-208	ENST00000509828	TCERG1	O14776	1098 aa	Known RBP	13.79	□□□□□ -0.2
MBD4-208	ENST00000509828	NEFM	P07197	916 aa		13.79	□□□□□ -0.2
MBD4-208	ENST00000509828	HSPA8	P11142	646 aa	Known RBP	13.79	□□□□□ -0.2
MBD4-208	ENST00000509828	CC2D2B	Q6DHV5	1058 aa		13.79	□□□□□ -0.2
MBD4-208	ENST00000509828	LARGE2	Q8N3Y3	721 aa		13.79	□□□□□ -0.2
MBD4-208	ENST00000509828	PCNT	O95613	3336 aa		13.79	□□□□□ -0.2
MBD4-208	ENST00000509828	CFAP44	Q96MT7	982 aa		13.78	□□□□□ -0.2
MBD4-208	ENST00000509828	DDX21	Q9NR30	783 aa	Known RBP eCLIP	13.78	□□□□□ -0.2
MBD4-208	ENST00000509828	CEMIP	Q8WUJ3	1361 aa		13.78	□□□□□ -0.2
MBD4-208	ENST00000509828	NBPF26	B4DH59	902 aa		13.77	□□□□□ -0.21
MBD4-208	ENST00000509828	RGL2	O15211	777 aa		13.77	□□□□□ -0.21
MBD4-208	ENST00000509828	SCN4A	P35499	1836 aa		13.77	□□□□□ -0.21
MBD4-208	ENST00000509828	HLF	Q16534	295 aa		13.77	□□□□□ -0.21
MBD4-208	ENST00000509828	VIRMA	Q69YN4	1812 aa	Known RBP	13.77	□□□□□ -0.21
MBD4-208	ENST00000509828	NBPF10	Q6P3W6	841 aa	Known RBP	13.77	□□□□□ -0.21
MBD4-208	ENST00000509828	KIF6	Q6ZMV9	814 aa		13.77	□□□□□ -0.21
MBD4-208	ENST00000509828	NUTM1	Q86Y26	1132 aa		13.77	□□□□□ -0.21
MBD4-208	ENST00000509828	NBPF15	Q8N660	670 aa		13.77	□□□□□ -0.21

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