RNA–Protein interactions for RNA: ENST00000505589.1

NEDD9-210, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 2

Gene NEDD9, Length 571 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-210ENST00000505589 GRIPAP1Q4V328 841 aa13.31□□□□□ -0.28
NEDD9-210ENST00000505589 AMER1Q5JTC6 1135 aaPredicted RBP13.31□□□□□ -0.28
NEDD9-210ENST00000505589 PRPF40BQ6NWY9 871 aaKnown RBP13.31□□□□□ -0.28
NEDD9-210ENST00000505589 HACL1Q9UJ83 578 aa13.31□□□□□ -0.28
NEDD9-210ENST00000505589 CCDC88AQ3V6T2 1871 aa13.31□□□□□ -0.28
NEDD9-210ENST00000505589 CNTNAP1P78357 1384 aa13.31□□□□□ -0.28
NEDD9-210ENST00000505589 BTBD11A6QL63 1104 aa13.3□□□□□ -0.28
NEDD9-210ENST00000505589 DEFB115Q30KQ5 88 aa13.3□□□□□ -0.28
NEDD9-210ENST00000505589 NBPF5PQ86XG9 351 aaPredicted RBP13.3□□□□□ -0.28
NEDD9-210ENST00000505589 DZIP3Q86Y13 1208 aaKnown RBP13.3□□□□□ -0.28
NEDD9-210ENST00000505589 TAF1DQ9H5J8 278 aaPredicted RBP13.3□□□□□ -0.28
NEDD9-210ENST00000505589 PASKQ96RG2 1323 aa13.3□□□□□ -0.28
NEDD9-210ENST00000505589 DLEC1Q9Y238 1755 aa13.3□□□□□ -0.28
NEDD9-210ENST00000505589 CAMTA2O94983 1202 aa13.29□□□□□ -0.28
NEDD9-210ENST00000505589 GTF2E1P29083 439 aaPredicted RBP13.29□□□□□ -0.28
NEDD9-210ENST00000505589 FKBP4Q02790 459 aaKnown RBP eCLIP13.29□□□□□ -0.28
NEDD9-210ENST00000505589 CC2D2BQ6DHV5 1058 aa13.29□□□□□ -0.28
NEDD9-210ENST00000505589 JDP2Q8WYK2 163 aa13.29□□□□□ -0.28
NEDD9-210ENST00000505589 BEGAINQ9BUH8 593 aa13.29□□□□□ -0.28
NEDD9-210ENST00000505589 U2SURPO15042 1029 aaKnown RBP13.28□□□□□ -0.28
NEDD9-210ENST00000505589 FOXN1O15353 648 aa13.28□□□□□ -0.28
NEDD9-210ENST00000505589 EAPPQ56P03 285 aaPredicted RBP13.28□□□□□ -0.28
NEDD9-210ENST00000505589 IL17REQ8NFR9 667 aa13.28□□□□□ -0.28
NEDD9-210ENST00000505589 RTF1Q92541 710 aaKnown RBP13.28□□□□□ -0.28
NEDD9-210ENST00000505589 WBP1LQ9NX94 342 aa13.28□□□□□ -0.28
NEDD9-210ENST00000505589 DICER1Q9UPY3 1922 aaKnown RBP13.28□□□□□ -0.28
NEDD9-210ENST00000505589 KLRG2A4D1S0 409 aaPredicted RBP13.27□□□□□ -0.29
NEDD9-210ENST00000505589 ITGBL1O95965 494 aaPredicted RBP13.27□□□□□ -0.29
NEDD9-210ENST00000505589 A1BGP04217 495 aa13.27□□□□□ -0.29
NEDD9-210ENST00000505589 SNRPA1P09661 255 aaKnown RBP13.27□□□□□ -0.29
NEDD9-210ENST00000505589 EPHX2P34913 555 aa13.27□□□□□ -0.29
NEDD9-210ENST00000505589 VEGFBP49765 207 aa13.27□□□□□ -0.29
NEDD9-210ENST00000505589 CNTROBQ8N137 903 aa13.27□□□□□ -0.29
NEDD9-210ENST00000505589 GPC2Q8N158 579 aa13.27□□□□□ -0.29
NEDD9-210ENST00000505589 C7orf43Q8WVR3 580 aa13.27□□□□□ -0.29
NEDD9-210ENST00000505589 PCGF6Q9BYE7 350 aa13.27□□□□□ -0.29
NEDD9-210ENST00000505589 TMX4Q9H1E5 349 aaPredicted RBP13.27□□□□□ -0.29
NEDD9-210ENST00000505589 NUDCQ9Y266 331 aa13.27□□□□□ -0.29
NEDD9-210ENST00000505589 RASSF10A6NK89 507 aa13.26□□□□□ -0.29
NEDD9-210ENST00000505589 POTEIP0CG38 1075 aa13.26□□□□□ -0.29
NEDD9-210ENST00000505589 POTEJP0CG39 1038 aa13.26□□□□□ -0.29
NEDD9-210ENST00000505589 SCN4AP35499 1836 aa13.26□□□□□ -0.29
NEDD9-210ENST00000505589 ECE1P42892 770 aa13.26□□□□□ -0.29
NEDD9-210ENST00000505589 EIF6P56537 245 aaKnown RBP13.26□□□□□ -0.29
NEDD9-210ENST00000505589 FER1L6Q2WGJ9 1857 aa13.26□□□□□ -0.29
NEDD9-210ENST00000505589 TIAM2Q8IVF5 1701 aa13.26□□□□□ -0.29
NEDD9-210ENST00000505589 CCDC24Q8N4L8 307 aa13.26□□□□□ -0.29
NEDD9-210ENST00000505589 CFAP53Q96M91 514 aa13.26□□□□□ -0.29
NEDD9-210ENST00000505589 FZD9O00144 591 aa13.25□□□□□ -0.29
NEDD9-210ENST00000505589 LMOD1P29536 600 aaPredicted RBP13.25□□□□□ -0.29
NEDD9-210ENST00000505589 IARSP41252 1262 aaKnown RBP13.25□□□□□ -0.29
NEDD9-210ENST00000505589 NYXQ9GZU5 481 aa13.25□□□□□ -0.29
NEDD9-210ENST00000505589 PER1O15534 1290 aaPredicted RBP13.24□□□□□ -0.29
NEDD9-210ENST00000505589 SYNE4Q8N205 404 aa13.24□□□□□ -0.29
NEDD9-210ENST00000505589 PSMD1Q99460 953 aa13.24□□□□□ -0.29
NEDD9-210ENST00000505589 ABT1Q9ULW3 272 aaKnown RBP13.24□□□□□ -0.29
NEDD9-210ENST00000505589 NIP7Q9Y221 180 aaKnown RBP eCLIP13.24□□□□□ -0.29
NEDD9-210ENST00000505589 USP16Q9Y5T5 823 aa13.24□□□□□ -0.29
NEDD9-210ENST00000505589 WDR33Q9C0J8 1336 aaKnown RBP13.23□□□□□ -0.29
NEDD9-210ENST00000505589 HTATSF1O43719 755 aaKnown RBP13.23□□□□□ -0.29
NEDD9-210ENST00000505589 LBX1P52954 281 aa13.23□□□□□ -0.29
NEDD9-210ENST00000505589 CC2D1BQ5T0F9 858 aaKnown RBP13.23□□□□□ -0.29
NEDD9-210ENST00000505589 ZNF277Q9NRM2 450 aaPredicted RBP13.23□□□□□ -0.29
NEDD9-210ENST00000505589 NEFMP07197 916 aa13.22□□□□□ -0.29
NEDD9-210ENST00000505589 VPS33BQ9H267 617 aa13.22□□□□□ -0.29
NEDD9-210ENST00000505589 CEMIPQ8WUJ3 1361 aa13.21□□□□□ -0.29
NEDD9-210ENST00000505589 NPC1L1Q9UHC9 1359 aa13.21□□□□□ -0.29
NEDD9-210ENST00000505589 USP50Q70EL3 339 aaPredicted RBP13.21□□□□□ -0.29
NEDD9-210ENST00000505589 DDX21Q9NR30 783 aaKnown RBP eCLIP13.21□□□□□ -0.29
NEDD9-210ENST00000505589 UBR2Q8IWV8 1755 aa13.21□□□□□ -0.29
NEDD9-210ENST00000505589 ERVV-1B6SEH8 477 aa13.2□□□□□ -0.3
NEDD9-210ENST00000505589 CA12O43570 354 aa13.2□□□□□ -0.3
NEDD9-210ENST00000505589 MAP2K2P36507 400 aa13.2□□□□□ -0.3
NEDD9-210ENST00000505589 ABHD8Q96I13 439 aa13.2□□□□□ -0.3
NEDD9-210ENST00000505589 SLX4Q8IY92 1834 aa13.2□□□□□ -0.3
NEDD9-210ENST00000505589 RNF123Q5XPI4 1314 aa13.19□□□□□ -0.3
NEDD9-210ENST00000505589 ANKRD31Q8N7Z5 1873 aa13.19□□□□□ -0.3
NEDD9-210ENST00000505589 MAPK8IP2Q13387 824 aaPredicted RBP13.19□□□□□ -0.3
NEDD9-210ENST00000505589 TAF7Q15545 349 aaPredicted RBP13.19□□□□□ -0.3
NEDD9-210ENST00000505589 MAP1SQ66K74 1059 aaPredicted RBP13.19□□□□□ -0.3
NEDD9-210ENST00000505589 PNISRQ8TF01 805 aaKnown RBP13.19□□□□□ -0.3
NEDD9-210ENST00000505589 RPGRQ92834 1020 aaKnown RBP13.19□□□□□ -0.3
NEDD9-210ENST00000505589 GPR101Q96P66 508 aaPredicted RBP13.19□□□□□ -0.3
NEDD9-210ENST00000505589 VIRMAQ69YN4 1812 aaKnown RBP13.18□□□□□ -0.3
NEDD9-210ENST00000505589 HSPA8P11142 646 aaKnown RBP13.18□□□□□ -0.3
NEDD9-210ENST00000505589 PRKAR2BP31323 418 aa13.18□□□□□ -0.3
NEDD9-210ENST00000505589 MLLT1Q03111 559 aaPredicted RBP13.18□□□□□ -0.3
NEDD9-210ENST00000505589 PAXIP1Q6ZW49 1069 aaPredicted RBP13.18□□□□□ -0.3
NEDD9-210ENST00000505589 RBM17Q96I25 401 aaKnown RBP13.18□□□□□ -0.3
NEDD9-210ENST00000505589 GJA3Q9Y6H8 435 aa13.18□□□□□ -0.3
NEDD9-210ENST00000505589 KIF7Q2M1P5 1343 aa13.17□□□□□ -0.3
NEDD9-210ENST00000505589 ZNF541Q9H0D2 1346 aa13.17□□□□□ -0.3
NEDD9-210ENST00000505589 KCNQ3O43525 872 aa13.17□□□□□ -0.3
NEDD9-210ENST00000505589 LARGE2Q8N3Y3 721 aa13.17□□□□□ -0.3
NEDD9-210ENST00000505589 SUPT20HQ8NEM7 779 aa13.17□□□□□ -0.3
NEDD9-210ENST00000505589 CCER1Q8TC90 406 aaPredicted RBP13.17□□□□□ -0.3
NEDD9-210ENST00000505589 PCDH10Q9P2E7 1040 aa13.17□□□□□ -0.3
NEDD9-210ENST00000505589 SCN7AQ01118 1682 aa13.17□□□□□ -0.3
NEDD9-210ENST00000505589 FAM177BA6PVY3 158 aa13.16□□□□□ -0.3
NEDD9-210ENST00000505589 HOXA10P31260 410 aaPredicted RBP13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms