RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 SSR1P43307 286 aaKnown RBP15.28■□□□□ 0.04
PTPRF-215ENST00000496447 NLRP5P59047 1200 aa15.28■□□□□ 0.04
PTPRF-215ENST00000496447 UBA5Q9GZZ9 404 aa15.28■□□□□ 0.04
PTPRF-215ENST00000496447 SH2B1Q9NRF2 756 aaPredicted RBP15.28■□□□□ 0.04
PTPRF-215ENST00000496447 SNRKQ9NRH2 765 aa15.28■□□□□ 0.04
PTPRF-215ENST00000496447 CLCN1P35523 988 aa15.28■□□□□ 0.04
PTPRF-215ENST00000496447 FAM177A1Q8N128 213 aaPredicted RBP15.28■□□□□ 0.04
PTPRF-215ENST00000496447 MBIPQ9NS73 344 aa15.28■□□□□ 0.04
PTPRF-215ENST00000496447 ECHDC1Q9NTX5 307 aa15.28■□□□□ 0.04
PTPRF-215ENST00000496447 AXDND1Q5T1B0 1012 aaPredicted RBP15.27■□□□□ 0.04
PTPRF-215ENST00000496447 SEPT7Q16181 437 aaKnown RBP15.27■□□□□ 0.04
PTPRF-215ENST00000496447 TSG101Q99816 390 aa15.27■□□□□ 0.04
PTPRF-215ENST00000496447 PDE4BQ07343 736 aa15.27■□□□□ 0.03
PTPRF-215ENST00000496447 ANKRD13DQ6ZTN6 518 aa15.27■□□□□ 0.03
PTPRF-215ENST00000496447 GOLGA6L10A6NI86 522 aa15.27■□□□□ 0.03
PTPRF-215ENST00000496447 SETDB2Q96T68 719 aa15.27■□□□□ 0.03
PTPRF-215ENST00000496447 MAP3K11Q16584 847 aa15.26■□□□□ 0.03
PTPRF-215ENST00000496447 ANKRD18AQ8IVF6 992 aa15.26■□□□□ 0.03
PTPRF-215ENST00000496447 GUCY1B3Q02153 619 aa15.26■□□□□ 0.03
PTPRF-215ENST00000496447 CCDC191Q8NCU4 936 aa15.26■□□□□ 0.03
PTPRF-215ENST00000496447 ZNF397Q8NF99 534 aaPredicted RBP15.26■□□□□ 0.03
PTPRF-215ENST00000496447 JARID2Q92833 1246 aaPredicted RBP15.26■□□□□ 0.03
PTPRF-215ENST00000496447 TSPY2A6NKD2 308 aa15.26■□□□□ 0.03
PTPRF-215ENST00000496447 TRIM27P14373 513 aa15.26■□□□□ 0.03
PTPRF-215ENST00000496447 DDB1Q16531 1140 aa15.26■□□□□ 0.03
PTPRF-215ENST00000496447 MPNDQ8N594 471 aa15.26■□□□□ 0.03
PTPRF-215ENST00000496447 SMARCC1Q92922 1105 aaPredicted RBP15.26■□□□□ 0.03
PTPRF-215ENST00000496447 ASXL2Q76L83 1435 aa15.26■□□□□ 0.03
PTPRF-215ENST00000496447 GSTO1P78417 241 aa15.25■□□□□ 0.03
PTPRF-215ENST00000496447 DYNC1I1O14576 645 aa15.25■□□□□ 0.03
PTPRF-215ENST00000496447 ANXA1P04083 346 aa15.25■□□□□ 0.03
PTPRF-215ENST00000496447 EPB41L2O43491 1005 aaKnown RBP15.25■□□□□ 0.03
PTPRF-215ENST00000496447 KIF5BP33176 963 aa15.25■□□□□ 0.03
PTPRF-215ENST00000496447 CBX1P83916 185 aa15.25■□□□□ 0.03
PTPRF-215ENST00000496447 CAMK4Q16566 473 aa15.25■□□□□ 0.03
PTPRF-215ENST00000496447 CFAP100Q494V2 611 aa15.25■□□□□ 0.03
PTPRF-215ENST00000496447 KIAA1328Q86T90 577 aa15.25■□□□□ 0.03
PTPRF-215ENST00000496447 CCDC12Q8WUD4 166 aaPredicted RBP15.25■□□□□ 0.03
PTPRF-215ENST00000496447 ZHX1Q9UKY1 873 aaPredicted RBP15.25■□□□□ 0.03
PTPRF-215ENST00000496447 ANKRD62A6NC57 917 aa15.25■□□□□ 0.03
PTPRF-215ENST00000496447 BAG4O95429 457 aaKnown RBP15.25■□□□□ 0.03
PTPRF-215ENST00000496447 UQCRFS1P1P0C7P4 283 aa15.25■□□□□ 0.03
PTPRF-215ENST00000496447 KAT14Q9H8E8 782 aa15.25■□□□□ 0.03
PTPRF-215ENST00000496447 BBXQ8WY36 941 aaPredicted RBP15.24■□□□□ 0.03
PTPRF-215ENST00000496447 SLC4A8Q2Y0W8 1093 aa15.24■□□□□ 0.03
PTPRF-215ENST00000496447 FILIP1Q7Z7B0 1213 aa15.24■□□□□ 0.03
PTPRF-215ENST00000496447 TAF4BQ92750 862 aa15.24■□□□□ 0.03
PTPRF-215ENST00000496447 ZRSR2Q15696 482 aaKnown RBP15.24■□□□□ 0.03
PTPRF-215ENST00000496447 VAT1LQ9HCJ6 419 aa15.24■□□□□ 0.03
PTPRF-215ENST00000496447 BICRAQ9NZM4 1560 aa15.24■□□□□ 0.03
PTPRF-215ENST00000496447 CGNQ9P2M7 1197 aaKnown RBP15.24■□□□□ 0.03
PTPRF-215ENST00000496447 TMEM67Q5HYA8 995 aa15.23■□□□□ 0.03
PTPRF-215ENST00000496447 CRNKL1Q9BZJ0 848 aaKnown RBP15.23■□□□□ 0.03
PTPRF-215ENST00000496447 DISP3Q9P2K9 1392 aa15.23■□□□□ 0.03
PTPRF-215ENST00000496447 CCT2P78371 535 aaKnown RBP15.23■□□□□ 0.03
PTPRF-215ENST00000496447 JAKMIP3Q5VZ66 844 aa15.23■□□□□ 0.03
PTPRF-215ENST00000496447 KLHL10Q6JEL2 608 aa15.23■□□□□ 0.03
PTPRF-215ENST00000496447 MFSD6Q6ZSS7 791 aa15.23■□□□□ 0.03
PTPRF-215ENST00000496447 PPIP5K1Q6PFW1 1433 aa15.23■□□□□ 0.03
PTPRF-215ENST00000496447 FKBP15Q5T1M5 1219 aa15.23■□□□□ 0.03
PTPRF-215ENST00000496447 C20orf194Q5TEA3 1177 aa15.23■□□□□ 0.03
PTPRF-215ENST00000496447 SCAND2PQ9GZW5 306 aaPredicted RBP15.23■□□□□ 0.03
PTPRF-215ENST00000496447 FBLN1P23142 703 aa15.23■□□□□ 0.03
PTPRF-215ENST00000496447 IQCEQ6IPM2 695 aa15.23■□□□□ 0.03
PTPRF-215ENST00000496447 RIMS2Q9UQ26 1411 aa15.23■□□□□ 0.03
PTPRF-215ENST00000496447 MAP3K1Q13233 1512 aa15.23■□□□□ 0.03
PTPRF-215ENST00000496447 CHPF2Q9P2E5 772 aa15.22■□□□□ 0.03
PTPRF-215ENST00000496447 LIMCH1Q9UPQ0 1083 aa15.22■□□□□ 0.03
PTPRF-215ENST00000496447 LIG1P18858 919 aa15.22■□□□□ 0.03
PTPRF-215ENST00000496447 MCM5P33992 734 aa15.22■□□□□ 0.03
PTPRF-215ENST00000496447 XAGE3Q8WTP9 111 aa15.22■□□□□ 0.03
PTPRF-215ENST00000496447 NLRP3Q96P20 1036 aa15.22■□□□□ 0.03
PTPRF-215ENST00000496447 HDAC9Q9UKV0 1011 aa15.22■□□□□ 0.03
PTPRF-215ENST00000496447 CETN2P41208 172 aa15.22■□□□□ 0.03
PTPRF-215ENST00000496447 PLCH2O75038 1416 aa15.22■□□□□ 0.03
PTPRF-215ENST00000496447 ERICH4A6NGS2 130 aa15.22■□□□□ 0.03
PTPRF-215ENST00000496447 KIF20AO95235 890 aa15.22■□□□□ 0.03
PTPRF-215ENST00000496447 HAND2P61296 217 aa15.22■□□□□ 0.03
PTPRF-215ENST00000496447 TMEM87AQ8NBN3 555 aa15.22■□□□□ 0.03
PTPRF-215ENST00000496447 SLC39A6Q13433 755 aa15.21■□□□□ 0.03
PTPRF-215ENST00000496447 A2MP01023 1474 aa15.21■□□□□ 0.03
PTPRF-215ENST00000496447 CCDC144CPQ8IYA2 1237 aa15.21■□□□□ 0.03
PTPRF-215ENST00000496447 CCDC150Q8NCX0 1101 aa15.21■□□□□ 0.03
PTPRF-215ENST00000496447 ARHGAP29Q52LW3 1261 aa15.21■□□□□ 0.03
PTPRF-215ENST00000496447 IL16Q14005 1332 aa15.21■□□□□ 0.02
PTPRF-215ENST00000496447 NIP7Q9Y221 180 aaKnown RBP eCLIP15.2■□□□□ 0.029e-8■□□□□ 8.2
PTPRF-215ENST00000496447 PLEKHH1Q9ULM0 1364 aa15.2■□□□□ 0.02
PTPRF-215ENST00000496447 FGFR1OPO95684 399 aaKnown RBP15.2■□□□□ 0.02
PTPRF-215ENST00000496447 IL2RBP14784 551 aa15.2■□□□□ 0.02
PTPRF-215ENST00000496447 IARSP41252 1262 aaKnown RBP15.2■□□□□ 0.02
PTPRF-215ENST00000496447 AKAP4Q5JQC9 854 aa15.2■□□□□ 0.02
PTPRF-215ENST00000496447 CABLES1Q8TDN4 633 aa15.2■□□□□ 0.02
PTPRF-215ENST00000496447 THOC2Q8NI27 1593 aaKnown RBP15.2■□□□□ 0.02
PTPRF-215ENST00000496447 RPRD2Q5VT52 1461 aaKnown RBP15.2■□□□□ 0.02
PTPRF-215ENST00000496447 COPS6Q7L5N1 327 aa15.2■□□□□ 0.02
PTPRF-215ENST00000496447 CACNA2D4Q7Z3S7 1137 aa15.2■□□□□ 0.02
PTPRF-215ENST00000496447 GPATCH8Q9UKJ3 1502 aaKnown RBP15.2■□□□□ 0.02
PTPRF-215ENST00000496447 TRMT1LQ7Z2T5 733 aaKnown RBP15.2■□□□□ 0.02
PTPRF-215ENST00000496447 USP16Q9Y5T5 823 aa15.2■□□□□ 0.02
PTPRF-215ENST00000496447 ERLIN1O75477 346 aa15.2■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 66.6 ms