RNA–Protein interactions for RNA: ENST00000494623.1

CHMP3-209, Transcript of charged multivesicular body protein 3, humanhuman

TSL 2

Gene CHMP3, Length 2,724 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-209ENST00000494623 TTC41PQ6P2S7 1318 aa13.57□□□□□ -0.24
CHMP3-209ENST00000494623 PHKG2P15735 406 aa13.57□□□□□ -0.24
CHMP3-209ENST00000494623 AACSQ86V21 672 aa13.57□□□□□ -0.24
CHMP3-209ENST00000494623 KAZALD1Q96I82 304 aa13.57□□□□□ -0.24
CHMP3-209ENST00000494623 DIAPH3Q9NSV4 1193 aa13.57□□□□□ -0.24
CHMP3-209ENST00000494623 ECHDC1Q9NTX5 307 aa13.57□□□□□ -0.24
CHMP3-209ENST00000494623 OVOS2A0A0G2JMS6 1433 aa13.57□□□□□ -0.24
CHMP3-209ENST00000494623 NPHP3Q7Z494 1330 aa13.57□□□□□ -0.24
CHMP3-209ENST00000494623 PIP4K2AP48426 406 aaPredicted RBP13.57□□□□□ -0.24
CHMP3-209ENST00000494623 G3BP1Q13283 466 aaKnown RBP eCLIP13.57□□□□□ -0.24
CHMP3-209ENST00000494623 LSG1Q9H089 658 aaKnown RBP13.57□□□□□ -0.24
CHMP3-209ENST00000494623 SNX14Q9Y5W7 946 aa13.57□□□□□ -0.24
CHMP3-209ENST00000494623 IGKV5-2P06315 115 aa13.56□□□□□ -0.24
CHMP3-209ENST00000494623 COPS6Q7L5N1 327 aa13.56□□□□□ -0.24
CHMP3-209ENST00000494623 ERC1Q8IUD2 1116 aa13.56□□□□□ -0.24
CHMP3-209ENST00000494623 XAGE3Q8WTP9 111 aa13.56□□□□□ -0.24
CHMP3-209ENST00000494623 LARP6Q9BRS8 491 aaKnown RBP13.56□□□□□ -0.24
CHMP3-209ENST00000494623 CCDC8Q9H0W5 538 aaPredicted RBP13.56□□□□□ -0.24
CHMP3-209ENST00000494623 SIL1Q9H173 461 aa13.56□□□□□ -0.24
CHMP3-209ENST00000494623 RAD50Q92878 1312 aa13.56□□□□□ -0.24
CHMP3-209ENST00000494623 EPB41L2O43491 1005 aaKnown RBP13.56□□□□□ -0.24
CHMP3-209ENST00000494623 LARP1Q6PKG0 1096 aaKnown RBP13.56□□□□□ -0.24
CHMP3-209ENST00000494623 RASEFQ8IZ41 740 aa13.56□□□□□ -0.24
CHMP3-209ENST00000494623 IFNL2Q8IZJ0 200 aa13.56□□□□□ -0.24
CHMP3-209ENST00000494623 GPATCH3Q96I76 525 aa13.56□□□□□ -0.24
CHMP3-209ENST00000494623 ZNF496Q96IT1 587 aaPredicted RBP13.56□□□□□ -0.24
CHMP3-209ENST00000494623 RGPD5Q99666 1765 aa13.56□□□□□ -0.24
CHMP3-209ENST00000494623 TRPM3Q9HCF6 1732 aaPredicted RBP13.56□□□□□ -0.24
CHMP3-209ENST00000494623 USP42Q9H9J4 1324 aaKnown RBP13.56□□□□□ -0.24
CHMP3-209ENST00000494623 NEXNQ0ZGT2 675 aa13.55□□□□□ -0.24
CHMP3-209ENST00000494623 JARID2Q92833 1246 aaPredicted RBP13.55□□□□□ -0.24
CHMP3-209ENST00000494623 IL17RAQ96F46 866 aa13.55□□□□□ -0.24
CHMP3-209ENST00000494623 INTS4Q96HW7 963 aaKnown RBP13.55□□□□□ -0.24
CHMP3-209ENST00000494623 MYD88Q99836 296 aa13.55□□□□□ -0.24
CHMP3-209ENST00000494623 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP13.55□□□□□ -0.24
CHMP3-209ENST00000494623 SASH1O94885 1247 aa13.55□□□□□ -0.24
CHMP3-209ENST00000494623 FOXD4L6Q3SYB3 417 aaPredicted RBP13.55□□□□□ -0.24
CHMP3-209ENST00000494623 FOXD4L3Q6VB84 417 aaPredicted RBP13.55□□□□□ -0.24
CHMP3-209ENST00000494623 KLHDC4Q8TBB5 520 aa13.55□□□□□ -0.24
CHMP3-209ENST00000494623 USP16Q9Y5T5 823 aa13.55□□□□□ -0.24
CHMP3-209ENST00000494623 TMEM94Q12767 1356 aa13.55□□□□□ -0.24
CHMP3-209ENST00000494623 BRD1O95696 1058 aa13.55□□□□□ -0.24
CHMP3-209ENST00000494623 GPT2Q8TD30 523 aa13.55□□□□□ -0.24
CHMP3-209ENST00000494623 RBM27Q9P2N5 1060 aaKnown RBP13.55□□□□□ -0.24
CHMP3-209ENST00000494623 ZSCAN23Q3MJ62 389 aa13.54□□□□□ -0.24
CHMP3-209ENST00000494623 TTC5Q8N0Z6 440 aa13.54□□□□□ -0.24
CHMP3-209ENST00000494623 RUFY2Q8WXA3 655 aa13.54□□□□□ -0.24
CHMP3-209ENST00000494623 EAF2Q96CJ1 260 aaPredicted RBP13.54□□□□□ -0.24
CHMP3-209ENST00000494623 NEURL1BA8MQ27 555 aa13.54□□□□□ -0.24
CHMP3-209ENST00000494623 PTH1RQ03431 593 aa13.54□□□□□ -0.24
CHMP3-209ENST00000494623 KDM6AO15550 1401 aaPredicted RBP13.53□□□□□ -0.24
CHMP3-209ENST00000494623 UTYO14607 1347 aa13.53□□□□□ -0.24
CHMP3-209ENST00000494623 CPA1P15085 419 aa13.53□□□□□ -0.24
CHMP3-209ENST00000494623 CYP27B1O15528 508 aa13.53□□□□□ -0.24
CHMP3-209ENST00000494623 AK2P54819 239 aa13.53□□□□□ -0.24
CHMP3-209ENST00000494623 GCKRQ14397 625 aa13.53□□□□□ -0.24
CHMP3-209ENST00000494623 ANKRD13DQ6ZTN6 518 aa13.53□□□□□ -0.24
CHMP3-209ENST00000494623 EVI5LQ96CN4 794 aa13.53□□□□□ -0.24
CHMP3-209ENST00000494623 SNRPA1P09661 255 aaKnown RBP13.52□□□□□ -0.24
CHMP3-209ENST00000494623 NASPP49321 788 aaPredicted RBP13.52□□□□□ -0.24
CHMP3-209ENST00000494623 EPHA10Q5JZY3 1008 aa13.52□□□□□ -0.24
CHMP3-209ENST00000494623 PRPF40BQ6NWY9 871 aaKnown RBP13.52□□□□□ -0.24
CHMP3-209ENST00000494623 METTL22Q9BUU2 404 aaPredicted RBP13.52□□□□□ -0.24
CHMP3-209ENST00000494623 TLR7Q9NYK1 1049 aaKnown RBP13.52□□□□□ -0.24
CHMP3-209ENST00000494623 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.52□□□□□ -0.24
CHMP3-209ENST00000494623 NSFL1CQ9UNZ2 370 aaKnown RBP13.52□□□□□ -0.24
CHMP3-209ENST00000494623 MST1RQ04912 1400 aa13.52□□□□□ -0.25
CHMP3-209ENST00000494623 ZNF445P59923 1031 aa13.52□□□□□ -0.25
CHMP3-209ENST00000494623 DCAF5Q96JK2 942 aa13.52□□□□□ -0.25
CHMP3-209ENST00000494623 BOLA2Q9H3K6 86 aa13.52□□□□□ -0.25
CHMP3-209ENST00000494623 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.52□□□□□ -0.253e-6■■□□□ 13.5
CHMP3-209ENST00000494623 MEGF6O75095 1541 aa13.52□□□□□ -0.25
CHMP3-209ENST00000494623 CASTP20810 708 aaKnown RBP13.51□□□□□ -0.25
CHMP3-209ENST00000494623 CABP4P57796 275 aa13.51□□□□□ -0.25
CHMP3-209ENST00000494623 TRIM44Q96DX7 344 aaPredicted RBP13.51□□□□□ -0.25
CHMP3-209ENST00000494623 KIF1AQ12756 1690 aa13.51□□□□□ -0.25
CHMP3-209ENST00000494623 DDX54Q8TDD1 881 aaKnown RBP13.51□□□□□ -0.25
CHMP3-209ENST00000494623 TTC14Q96N46 770 aa13.51□□□□□ -0.25
CHMP3-209ENST00000494623 CAMTA1Q9Y6Y1 1673 aa13.51□□□□□ -0.25
CHMP3-209ENST00000494623 RUFY3Q7L099 469 aa13.5□□□□□ -0.25
CHMP3-209ENST00000494623 FAM227BQ96M60 508 aa13.5□□□□□ -0.25
CHMP3-209ENST00000494623 FMNL2Q96PY5 1086 aa13.5□□□□□ -0.25
CHMP3-209ENST00000494623 LIMCH1Q9UPQ0 1083 aa13.5□□□□□ -0.25
CHMP3-209ENST00000494623 ATP5J2-PTCD1G3V325 749 aa13.5□□□□□ -0.25
CHMP3-209ENST00000494623 PTCD1O75127 700 aaKnown RBP13.5□□□□□ -0.25
CHMP3-209ENST00000494623 ADCK5Q3MIX3 580 aa13.5□□□□□ -0.25
CHMP3-209ENST00000494623 CADPS2Q86UW7 1296 aa13.5□□□□□ -0.25
CHMP3-209ENST00000494623 JAKMIP1Q96N16 626 aaKnown RBP13.5□□□□□ -0.25
CHMP3-209ENST00000494623 SIPA1L3O60292 1781 aaPredicted RBP13.5□□□□□ -0.25
CHMP3-209ENST00000494623 KCNJ4P48050 445 aa13.49□□□□□ -0.25
CHMP3-209ENST00000494623 PRIM1P49642 420 aaKnown RBP13.49□□□□□ -0.25
CHMP3-209ENST00000494623 ANP32BQ92688 251 aaKnown RBP13.49□□□□□ -0.25
CHMP3-209ENST00000494623 GDPD2Q9HCC8 539 aa13.49□□□□□ -0.25
CHMP3-209ENST00000494623 TMEM63CQ9P1W3 806 aa13.49□□□□□ -0.25
CHMP3-209ENST00000494623 DTNBO60941 627 aa13.49□□□□□ -0.25
CHMP3-209ENST00000494623 NMIQ13287 307 aaPredicted RBP13.49□□□□□ -0.25
CHMP3-209ENST00000494623 ALS2Q96Q42 1657 aa13.49□□□□□ -0.25
CHMP3-209ENST00000494623 FSD1Q9BTV5 496 aa13.48□□□□□ -0.25
CHMP3-209ENST00000494623 RBSNQ9H1K0 784 aa13.48□□□□□ -0.25
CHMP3-209ENST00000494623 PDRG1Q9NUG6 133 aa13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 73.4 ms