RNA–Protein interactions for RNA: ENST00000493582.5

HDAC4-210, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,188 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-210ENST00000493582 CWC27Q6UX04 472 aaKnown RBP13.85□□□□□ -0.19
HDAC4-210ENST00000493582 CDC37L1Q7L3B6 337 aa13.85□□□□□ -0.19
HDAC4-210ENST00000493582 LRRN4CLQ8ND94 238 aa13.85□□□□□ -0.19
HDAC4-210ENST00000493582 CDC42BPGQ6DT37 1551 aa13.85□□□□□ -0.19
HDAC4-210ENST00000493582 CHL1O00533 1208 aa13.84□□□□□ -0.19
HDAC4-210ENST00000493582 RAD51AP2Q09MP3 1159 aa13.84□□□□□ -0.19
HDAC4-210ENST00000493582 ST3GAL1Q11201 340 aa13.84□□□□□ -0.19
HDAC4-210ENST00000493582 BMS1Q14692 1282 aaKnown RBP13.84□□□□□ -0.19
HDAC4-210ENST00000493582 LSG1Q9H089 658 aaKnown RBP13.84□□□□□ -0.19
HDAC4-210ENST00000493582 CCDC171Q6TFL3 1326 aa13.84□□□□□ -0.19
HDAC4-210ENST00000493582 NR1I2O75469 434 aa13.84□□□□□ -0.19
HDAC4-210ENST00000493582 AEBP1Q8IUX7 1158 aa13.84□□□□□ -0.19
HDAC4-210ENST00000493582 ZBTB9Q96C00 473 aa13.84□□□□□ -0.19
HDAC4-210ENST00000493582 ZFP91Q96JP5 570 aaPredicted RBP13.84□□□□□ -0.19
HDAC4-210ENST00000493582 FHOD1Q9Y613 1164 aa13.84□□□□□ -0.19
HDAC4-210ENST00000493582 ANKRD26Q9UPS8 1709 aa13.84□□□□□ -0.19
HDAC4-210ENST00000493582 ABCC3O15438 1527 aa13.84□□□□□ -0.19
HDAC4-210ENST00000493582 ME3Q16798 604 aa13.83□□□□□ -0.19
HDAC4-210ENST00000493582 ABCA9Q8IUA7 1624 aa13.83□□□□□ -0.2
HDAC4-210ENST00000493582 POLR3GO15318 223 aaPredicted RBP13.83□□□□□ -0.2
HDAC4-210ENST00000493582 HAP1P54257 671 aaPredicted RBP13.83□□□□□ -0.2
HDAC4-210ENST00000493582 NEK11Q8NG66 645 aa13.83□□□□□ -0.2
HDAC4-210ENST00000493582 PDRG1Q9NUG6 133 aa13.83□□□□□ -0.2
HDAC4-210ENST00000493582 ZKSCAN7Q9P0L1 754 aaPredicted RBP13.83□□□□□ -0.2
HDAC4-210ENST00000493582 NPATQ14207 1427 aa13.83□□□□□ -0.2
HDAC4-210ENST00000493582 CCT4P50991 539 aaKnown RBP13.83□□□□□ -0.2
HDAC4-210ENST00000493582 SLFNL1Q499Z3 407 aa13.83□□□□□ -0.2
HDAC4-210ENST00000493582 TAF7LQ5H9L4 462 aa13.83□□□□□ -0.2
HDAC4-210ENST00000493582 JAKMIP1Q96N16 626 aaKnown RBP13.83□□□□□ -0.2
HDAC4-210ENST00000493582 YTHDC2Q9H6S0 1430 aaKnown RBP13.82□□□□□ -0.2
HDAC4-210ENST00000493582 CCDC69A6NI79 296 aa13.82□□□□□ -0.2
HDAC4-210ENST00000493582 CLCN6P51797 869 aa13.82□□□□□ -0.2
HDAC4-210ENST00000493582 ATP8B2P98198 1209 aa13.82□□□□□ -0.2
HDAC4-210ENST00000493582 SPATA32Q96LK8 384 aa13.82□□□□□ -0.2
HDAC4-210ENST00000493582 LMTK2Q8IWU2 1503 aa13.82□□□□□ -0.2
HDAC4-210ENST00000493582 CPSF1Q10570 1443 aaKnown RBP13.82□□□□□ -0.2
HDAC4-210ENST00000493582 PAXIP1Q6ZW49 1069 aaPredicted RBP13.82□□□□□ -0.2
HDAC4-210ENST00000493582 NME9Q86XW9 330 aa13.82□□□□□ -0.2
HDAC4-210ENST00000493582 CCAR2Q8N163 923 aaKnown RBP13.82□□□□□ -0.2
HDAC4-210ENST00000493582 A0A087WWV3 80 aa13.81□□□□□ -0.2
HDAC4-210ENST00000493582 PLA2G4AP47712 749 aa13.81□□□□□ -0.2
HDAC4-210ENST00000493582 CLSTN2Q9H4D0 955 aa13.81□□□□□ -0.2
HDAC4-210ENST00000493582 GOLGA6L19H0YKK7 550 aa13.81□□□□□ -0.2
HDAC4-210ENST00000493582 PNMA6AP0CW24 399 aaPredicted RBP13.81□□□□□ -0.2
HDAC4-210ENST00000493582 H2AFXP16104 143 aaPredicted RBP13.81□□□□□ -0.2
HDAC4-210ENST00000493582 LRRFIP2Q9Y608 721 aaKnown RBP13.81□□□□□ -0.2
HDAC4-210ENST00000493582 DLG5Q8TDM6 1919 aa13.81□□□□□ -0.2
HDAC4-210ENST00000493582 CCZ1BP86790 482 aa13.81□□□□□ -0.2
HDAC4-210ENST00000493582 CCZ1P86791 482 aaPredicted RBP13.81□□□□□ -0.2
HDAC4-210ENST00000493582 COL9A3Q14050 684 aaPredicted RBP13.81□□□□□ -0.2
HDAC4-210ENST00000493582 BICD2Q8TD16 824 aa13.81□□□□□ -0.2
HDAC4-210ENST00000493582 EPB41L2O43491 1005 aaKnown RBP13.8□□□□□ -0.2
HDAC4-210ENST00000493582 FAM193AP78312 1265 aa13.8□□□□□ -0.2
HDAC4-210ENST00000493582 PRPF40BQ6NWY9 871 aaKnown RBP13.8□□□□□ -0.2
HDAC4-210ENST00000493582 DDX19AQ9NUU7 478 aaKnown RBP13.8□□□□□ -0.2
HDAC4-210ENST00000493582 PTH1RQ03431 593 aa13.8□□□□□ -0.2
HDAC4-210ENST00000493582 SULT6B1Q6IMI4 303 aa13.8□□□□□ -0.2
HDAC4-210ENST00000493582 C11orf57Q6ZUT1 292 aaPredicted RBP13.8□□□□□ -0.2
HDAC4-210ENST00000493582 ELP1O95163 1332 aa13.8□□□□□ -0.2
HDAC4-210ENST00000493582 IQCB1Q15051 598 aa13.79□□□□□ -0.2
HDAC4-210ENST00000493582 RBM43Q6ZSC3 357 aaKnown RBP13.79□□□□□ -0.2
HDAC4-210ENST00000493582 LEO1Q8WVC0 666 aaPredicted RBP13.79□□□□□ -0.2
HDAC4-210ENST00000493582 NECTIN2Q92692 538 aa13.79□□□□□ -0.2
HDAC4-210ENST00000493582 PGBD1Q96JS3 809 aa13.79□□□□□ -0.2
HDAC4-210ENST00000493582 TPCN1Q9ULQ1 816 aa13.79□□□□□ -0.2
HDAC4-210ENST00000493582 CDC25BP30305 580 aa13.79□□□□□ -0.2
HDAC4-210ENST00000493582 TNNT3P45378 269 aaPredicted RBP13.79□□□□□ -0.2
HDAC4-210ENST00000493582 ARHGAP29Q52LW3 1261 aa13.79□□□□□ -0.2
HDAC4-210ENST00000493582 VPS53Q5VIR6 699 aa13.79□□□□□ -0.2
HDAC4-210ENST00000493582 PI4K2BQ8TCG2 481 aa13.79□□□□□ -0.2
HDAC4-210ENST00000493582 ZCCHC17Q9NP64 241 aaKnown RBP13.79□□□□□ -0.2
HDAC4-210ENST00000493582 MAP2P11137 1827 aaKnown RBP13.79□□□□□ -0.2
HDAC4-210ENST00000493582 KIDINS220Q9ULH0 1771 aa13.79□□□□□ -0.2
HDAC4-210ENST00000493582 HTATSF1O43719 755 aaKnown RBP13.79□□□□□ -0.2
HDAC4-210ENST00000493582 SYT10Q6XYQ8 523 aa13.79□□□□□ -0.2
HDAC4-210ENST00000493582 CREBRFQ8IUR6 639 aa13.79□□□□□ -0.2
HDAC4-210ENST00000493582 NFATC2IPQ8NCF5 419 aa13.79□□□□□ -0.2
HDAC4-210ENST00000493582 CYP46A1Q9Y6A2 500 aa13.79□□□□□ -0.2
HDAC4-210ENST00000493582 NPHP3Q7Z494 1330 aa13.78□□□□□ -0.2
HDAC4-210ENST00000493582 TTC21AQ8NDW8 1320 aa13.78□□□□□ -0.2
HDAC4-210ENST00000493582 ASXL2Q76L83 1435 aa13.78□□□□□ -0.2
HDAC4-210ENST00000493582 NEMFO60524 1076 aa13.78□□□□□ -0.2
HDAC4-210ENST00000493582 ST5P78524 1137 aa13.78□□□□□ -0.2
HDAC4-210ENST00000493582 GORABQ5T7V8 394 aa13.78□□□□□ -0.2
HDAC4-210ENST00000493582 ZSCAN31Q96LW9 406 aaPredicted RBP13.78□□□□□ -0.2
HDAC4-210ENST00000493582 TCEANC2Q96MN5 208 aa13.78□□□□□ -0.2
HDAC4-210ENST00000493582 SCAND2PQ9GZW5 306 aaPredicted RBP13.78□□□□□ -0.2
HDAC4-210ENST00000493582 TSPYL1Q9H0U9 437 aa13.78□□□□□ -0.2
HDAC4-210ENST00000493582 SH2B1Q9NRF2 756 aaPredicted RBP13.78□□□□□ -0.2
HDAC4-210ENST00000493582 IRX3P78415 501 aaPredicted RBP13.78□□□□□ -0.2
HDAC4-210ENST00000493582 MRFAP1L1Q96HT8 127 aa13.78□□□□□ -0.2
HDAC4-210ENST00000493582 RSPH14Q9UHP6 348 aa13.78□□□□□ -0.2
HDAC4-210ENST00000493582 SURF6O75683 361 aaKnown RBP13.77□□□□□ -0.2
HDAC4-210ENST00000493582 SNW1Q13573 536 aaKnown RBP13.77□□□□□ -0.2
HDAC4-210ENST00000493582 LARP1Q6PKG0 1096 aaKnown RBP13.77□□□□□ -0.2
HDAC4-210ENST00000493582 KRBA2Q6ZNG9 492 aa13.77□□□□□ -0.2
HDAC4-210ENST00000493582 GNAI3P08754 354 aa13.77□□□□□ -0.21
HDAC4-210ENST00000493582 IDI1Q13907 227 aa13.77□□□□□ -0.21
HDAC4-210ENST00000493582 FBXW7Q969H0 707 aa13.77□□□□□ -0.21
HDAC4-210ENST00000493582 TMX1Q9H3N1 280 aa13.77□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms