RNA–Protein interactions for RNA: ENST00000490993.5

NPHP3-208, Transcript of nephrocystin 3, humanhuman

TSL 5

Gene NPHP3, Length 5,197 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-208ENST00000490993 HSPA2P54652 639 aa8.77□□□□□ -1.01
NPHP3-208ENST00000490993 TPM4P67936 248 aa8.77□□□□□ -1.01
NPHP3-208ENST00000490993 METTL22Q9BUU2 404 aaPredicted RBP8.77□□□□□ -1.01
NPHP3-208ENST00000490993 FER1L4A9Z1Z3 1794 aa8.77□□□□□ -1.01
NPHP3-208ENST00000490993 DHX16O60231 1041 aaKnown RBP8.77□□□□□ -1.01
NPHP3-208ENST00000490993 PRPF40AO75400 957 aaKnown RBP8.77□□□□□ -1.01
NPHP3-208ENST00000490993 GIGYF1O75420 1035 aaPredicted RBP8.77□□□□□ -1.01
NPHP3-208ENST00000490993 TNPO1Q92973 898 aaKnown RBP8.77□□□□□ -1.01
NPHP3-208ENST00000490993 CASTP20810 708 aaKnown RBP8.76□□□□□ -1.01
NPHP3-208ENST00000490993 UBE3BQ7Z3V4 1068 aa8.76□□□□□ -1.01
NPHP3-208ENST00000490993 VPS37DQ86XT2 251 aa8.76□□□□□ -1.01
NPHP3-208ENST00000490993 SSH3Q8TE77 659 aa8.76□□□□□ -1.01
NPHP3-208ENST00000490993 CCDC8Q9H0W5 538 aaPredicted RBP8.76□□□□□ -1.01
NPHP3-208ENST00000490993 BOLA2Q9H3K6 86 aa8.76□□□□□ -1.01
NPHP3-208ENST00000490993 HMG20BQ9P0W2 317 aa8.76□□□□□ -1.01
NPHP3-208ENST00000490993 U3KPZ7 1027 aaPredicted RBP8.76□□□□□ -1.01
NPHP3-208ENST00000490993 ANKRD26Q9UPS8 1709 aa8.76□□□□□ -1.01
NPHP3-208ENST00000490993 PHKG2P15735 406 aa8.76□□□□□ -1.01
NPHP3-208ENST00000490993 SF3A1Q15459 793 aaKnown RBP8.76□□□□□ -1.01
NPHP3-208ENST00000490993 TOMM22Q9NS69 142 aa8.76□□□□□ -1.01
NPHP3-208ENST00000490993 LIMCH1Q9UPQ0 1083 aa8.76□□□□□ -1.01
NPHP3-208ENST00000490993 HMGB1P09429 215 aaKnown RBP8.76□□□□□ -1.01
NPHP3-208ENST00000490993 CHMLP26374 656 aa8.76□□□□□ -1.01
NPHP3-208ENST00000490993 HMGB2P26583 209 aaKnown RBP8.76□□□□□ -1.01
NPHP3-208ENST00000490993 NAP1L5Q96NT1 182 aaPredicted RBP8.76□□□□□ -1.01
NPHP3-208ENST00000490993 IFIT5Q13325 482 aaKnown RBP8.76□□□□□ -1.01
NPHP3-208ENST00000490993 MEX3CQ5U5Q3 659 aaKnown RBP8.76□□□□□ -1.01
NPHP3-208ENST00000490993 PLBD2Q8NHP8 589 aa8.76□□□□□ -1.01
NPHP3-208ENST00000490993 GNL3LQ9NVN8 582 aaKnown RBP8.76□□□□□ -1.01
NPHP3-208ENST00000490993 ERVV-2B6SEH9 535 aa8.75□□□□□ -1.01
NPHP3-208ENST00000490993 PRPF40BQ6NWY9 871 aaKnown RBP8.75□□□□□ -1.01
NPHP3-208ENST00000490993 DRC7Q8IY82 874 aa8.75□□□□□ -1.01
NPHP3-208ENST00000490993 USP44Q9H0E7 712 aa8.75□□□□□ -1.01
NPHP3-208ENST00000490993 SLAIN2Q9P270 581 aa8.75□□□□□ -1.01
NPHP3-208ENST00000490993 ZNF652Q9Y2D9 606 aa8.75□□□□□ -1.01
NPHP3-208ENST00000490993 ERBB4Q15303 1308 aa8.75□□□□□ -1.01
NPHP3-208ENST00000490993 RAD50Q92878 1312 aa8.75□□□□□ -1.01
NPHP3-208ENST00000490993 TRIM29Q14134 588 aa8.75□□□□□ -1.01
NPHP3-208ENST00000490993 OSBPL3Q9H4L5 887 aa8.75□□□□□ -1.01
NPHP3-208ENST00000490993 CRB1P82279 1406 aa8.75□□□□□ -1.01
NPHP3-208ENST00000490993 ERICH2A1L162 156 aa8.75□□□□□ -1.01
NPHP3-208ENST00000490993 KNDC1Q76NI1 1749 aa8.75□□□□□ -1.01
NPHP3-208ENST00000490993 UBR1Q8IWV7 1749 aa8.75□□□□□ -1.01
NPHP3-208ENST00000490993 IBTKQ9P2D0 1353 aaPredicted RBP8.75□□□□□ -1.01
NPHP3-208ENST00000490993 SHPRHQ149N8 1683 aa8.75□□□□□ -1.01
NPHP3-208ENST00000490993 CWF19L2Q2TBE0 894 aaKnown RBP8.75□□□□□ -1.01
NPHP3-208ENST00000490993 FOXD4L6Q3SYB3 417 aaPredicted RBP8.75□□□□□ -1.01
NPHP3-208ENST00000490993 BEND3Q5T5X7 828 aa8.75□□□□□ -1.01
NPHP3-208ENST00000490993 FOXD4L3Q6VB84 417 aaPredicted RBP8.75□□□□□ -1.01
NPHP3-208ENST00000490993 CDCA7Q9BWT1 371 aaPredicted RBP8.75□□□□□ -1.01
NPHP3-208ENST00000490993 IFIT1P09914 478 aaKnown RBP8.74□□□□□ -1.01
NPHP3-208ENST00000490993 IL15P40933 162 aaPredicted RBP8.74□□□□□ -1.01
NPHP3-208ENST00000490993 TSHZ3Q63HK5 1081 aa8.74□□□□□ -1.01
NPHP3-208ENST00000490993 CAVIN1Q6NZI2 390 aaKnown RBP8.74□□□□□ -1.01
NPHP3-208ENST00000490993 MPHOSPH8Q99549 860 aa8.74□□□□□ -1.01
NPHP3-208ENST00000490993 ERBB3P21860 1342 aa8.74□□□□□ -1.01
NPHP3-208ENST00000490993 PNMA6EA0A0J9YXQ4 647 aa8.74□□□□□ -1.01
NPHP3-208ENST00000490993 ATP5J2-PTCD1G3V325 749 aa8.74□□□□□ -1.01
NPHP3-208ENST00000490993 AMOTL1Q8IY63 956 aa8.74□□□□□ -1.01
NPHP3-208ENST00000490993 ZBTB3Q9H5J0 574 aa8.74□□□□□ -1.01
NPHP3-208ENST00000490993 SSH2Q76I76 1423 aa8.74□□□□□ -1.01
NPHP3-208ENST00000490993 ANKRD18BA2A2Z9 1011 aa8.74□□□□□ -1.01
NPHP3-208ENST00000490993 NASPP49321 788 aaPredicted RBP8.74□□□□□ -1.01
NPHP3-208ENST00000490993 AKAP17AQ02040 695 aaKnown RBP8.74□□□□□ -1.01
NPHP3-208ENST00000490993 CHAF1AQ13111 956 aaPredicted RBP8.74□□□□□ -1.01
NPHP3-208ENST00000490993 NOL10Q9BSC4 688 aaKnown RBP8.74□□□□□ -1.01
NPHP3-208ENST00000490993 TAOK2Q9UL54 1235 aa8.74□□□□□ -1.01
NPHP3-208ENST00000490993 METTL24Q5JXM2 366 aa8.74□□□□□ -1.01
NPHP3-208ENST00000490993 BICC1Q9H694 974 aaKnown RBP8.73□□□□□ -1.01
NPHP3-208ENST00000490993 FKBP4Q02790 459 aaKnown RBP eCLIP8.73□□□□□ -1.01
NPHP3-208ENST00000490993 NFXL1Q6ZNB6 911 aa8.73□□□□□ -1.01
NPHP3-208ENST00000490993 UPF3BQ9BZI7 483 aaKnown RBP8.73□□□□□ -1.01
NPHP3-208ENST00000490993 NUTM2BA6NNL0 878 aaPredicted RBP8.73□□□□□ -1.01
NPHP3-208ENST00000490993 NUTM2EB1AL46 878 aaPredicted RBP8.73□□□□□ -1.01
NPHP3-208ENST00000490993 IGHMBP2P38935 993 aaKnown RBP8.73□□□□□ -1.01
NPHP3-208ENST00000490993 SART3Q15020 963 aaKnown RBP8.73□□□□□ -1.01
NPHP3-208ENST00000490993 RAB3GAP1Q15042 981 aa8.73□□□□□ -1.01
NPHP3-208ENST00000490993 LARP1BQ659C4 914 aaKnown RBP8.73□□□□□ -1.01
NPHP3-208ENST00000490993 NUTM2AQ8IVF1 878 aaPredicted RBP8.73□□□□□ -1.01
NPHP3-208ENST00000490993 OTUD7AQ8TE49 926 aaPredicted RBP8.73□□□□□ -1.01
NPHP3-208ENST00000490993 STAP2Q9UGK3 403 aa8.73□□□□□ -1.01
NPHP3-208ENST00000490993 RIMS1Q86UR5 1692 aaKnown RBP8.73□□□□□ -1.01
NPHP3-208ENST00000490993 GSPT1P15170 499 aaKnown RBP8.73□□□□□ -1.01
NPHP3-208ENST00000490993 SSFA2P28290 1259 aa8.73□□□□□ -1.01
NPHP3-208ENST00000490993 SIRT2Q8IXJ6 389 aa8.73□□□□□ -1.01
NPHP3-208ENST00000490993 INTS4Q96HW7 963 aaKnown RBP8.73□□□□□ -1.01
NPHP3-208ENST00000490993 TMX3Q96JJ7 454 aa8.73□□□□□ -1.01
NPHP3-208ENST00000490993 ZNF396Q96N95 335 aaPredicted RBP8.73□□□□□ -1.01
NPHP3-208ENST00000490993 GRPEL1Q9HAV7 217 aa8.73□□□□□ -1.01
NPHP3-208ENST00000490993 NRKQ7Z2Y5 1582 aa8.73□□□□□ -1.01
NPHP3-208ENST00000490993 NBPF7P0C2Y1 421 aaPredicted RBP8.72□□□□□ -1.01
NPHP3-208ENST00000490993 CCDC173Q0VFZ6 552 aa8.72□□□□□ -1.01
NPHP3-208ENST00000490993 BICD2Q8TD16 824 aa8.72□□□□□ -1.01
NPHP3-208ENST00000490993 NACAP1Q9BZK3 213 aa8.72□□□□□ -1.01
NPHP3-208ENST00000490993 TRMT112Q9UI30 125 aaKnown RBP8.72□□□□□ -1.01
NPHP3-208ENST00000490993 KRT85P78386 507 aa8.72□□□□□ -1.01
NPHP3-208ENST00000490993 TTF1Q15361 905 aaPredicted RBP8.72□□□□□ -1.01
NPHP3-208ENST00000490993 IMMTQ16891 758 aaKnown RBP8.72□□□□□ -1.01
NPHP3-208ENST00000490993 TSPY26PQ9H489 355 aa8.72□□□□□ -1.01
NPHP3-208ENST00000490993 MAP2P11137 1827 aaKnown RBP8.72□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 177.9 ms