RNA–Protein interactions for RNA: ENST00000481999.1

CHD3-211, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 2,515 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-211ENST00000481999 KIF2CQ99661 725 aa17.78■□□□□ 0.44
CHD3-211ENST00000481999 ZNF330Q9Y3S2 320 aaPredicted RBP17.78■□□□□ 0.44
CHD3-211ENST00000481999 TOGARAM1Q9Y4F4 1720 aa17.78■□□□□ 0.44
CHD3-211ENST00000481999 DDX58O95786 925 aaKnown RBP17.78■□□□□ 0.44
CHD3-211ENST00000481999 MX1P20591 662 aa17.78■□□□□ 0.44
CHD3-211ENST00000481999 EPHA10Q5JZY3 1008 aa17.78■□□□□ 0.44
CHD3-211ENST00000481999 TTLL7Q6ZT98 887 aa17.78■□□□□ 0.44
CHD3-211ENST00000481999 CHMP4AQ9BY43 222 aa17.77■□□□□ 0.44
CHD3-211ENST00000481999 EP400Q96L91 3159 aa17.77■□□□□ 0.44
CHD3-211ENST00000481999 NEURL1BA8MQ27 555 aa17.77■□□□□ 0.44
CHD3-211ENST00000481999 CD2BP2O95400 341 aaKnown RBP17.77■□□□□ 0.44
CHD3-211ENST00000481999 RBM25P49756 843 aaKnown RBP17.77■□□□□ 0.44
CHD3-211ENST00000481999 NKX1-1Q15270 411 aaPredicted RBP17.76■□□□□ 0.43
CHD3-211ENST00000481999 RHPN1Q8TCX5 695 aa17.76■□□□□ 0.43
CHD3-211ENST00000481999 ALDH1L1O75891 902 aa17.76■□□□□ 0.43
CHD3-211ENST00000481999 SYTL4Q96C24 671 aaPredicted RBP17.76■□□□□ 0.43
CHD3-211ENST00000481999 SIL1Q9H173 461 aa17.76■□□□□ 0.43
CHD3-211ENST00000481999 ERVV-2B6SEH9 535 aa17.75■□□□□ 0.43
CHD3-211ENST00000481999 HSCBQ8IWL3 235 aa17.75■□□□□ 0.43
CHD3-211ENST00000481999 PIGBQ92521 554 aa17.75■□□□□ 0.43
CHD3-211ENST00000481999 RILPL2Q969X0 211 aa17.75■□□□□ 0.43
CHD3-211ENST00000481999 GCKRQ14397 625 aa17.75■□□□□ 0.43
CHD3-211ENST00000481999 METTL22Q9BUU2 404 aaPredicted RBP17.75■□□□□ 0.43
CHD3-211ENST00000481999 CHMP5Q9NZZ3 219 aa17.75■□□□□ 0.43
CHD3-211ENST00000481999 KCPQ6ZWJ8 1503 aa17.75■□□□□ 0.43
CHD3-211ENST00000481999 COL22A1Q8NFW1 1626 aaPredicted RBP17.75■□□□□ 0.43
CHD3-211ENST00000481999 TRIM6-TRIM34B2RNG4 842 aa17.74■□□□□ 0.43
CHD3-211ENST00000481999 OS9Q13438 667 aaPredicted RBP17.74■□□□□ 0.43
CHD3-211ENST00000481999 ZBTB3Q9H5J0 574 aa17.74■□□□□ 0.43
CHD3-211ENST00000481999 TMOD3Q9NYL9 352 aa17.74■□□□□ 0.43
CHD3-211ENST00000481999 BRPF3Q9ULD4 1205 aa17.74■□□□□ 0.43
CHD3-211ENST00000481999 A0A0G2JS52 829 aa17.74■□□□□ 0.43
CHD3-211ENST00000481999 UBE3BQ7Z3V4 1068 aa17.73■□□□□ 0.43
CHD3-211ENST00000481999 IL25Q9H293 177 aa17.73■□□□□ 0.43
CHD3-211ENST00000481999 OSBPL3Q9H4L5 887 aa17.73■□□□□ 0.43
CHD3-211ENST00000481999 NEXNQ0ZGT2 675 aa17.73■□□□□ 0.43
CHD3-211ENST00000481999 SNX21Q969T3 373 aa17.72■□□□□ 0.43
CHD3-211ENST00000481999 SPATA31A6Q5VVP1 1343 aa17.71■□□□□ 0.43
CHD3-211ENST00000481999 DNAJC10Q8IXB1 793 aa17.71■□□□□ 0.43
CHD3-211ENST00000481999 UBR2Q8IWV8 1755 aa17.71■□□□□ 0.43
CHD3-211ENST00000481999 LRP6O75581 1613 aa17.71■□□□□ 0.42
CHD3-211ENST00000481999 PLEKHG2Q9H7P9 1386 aa17.7■□□□□ 0.42
CHD3-211ENST00000481999 MTX1Q13505 466 aa17.7■□□□□ 0.42
CHD3-211ENST00000481999 ARXQ96QS3 562 aa17.7■□□□□ 0.42
CHD3-211ENST00000481999 ARFGEF2Q9Y6D5 1785 aa17.7■□□□□ 0.42
CHD3-211ENST00000481999 KIF1BPQ96EK5 621 aa17.7■□□□□ 0.42
CHD3-211ENST00000481999 ATG3Q9NT62 314 aa17.7■□□□□ 0.42
CHD3-211ENST00000481999 UTYO14607 1347 aa17.7■□□□□ 0.42
CHD3-211ENST00000481999 A0A087WZG4 1122 aa17.69■□□□□ 0.42
CHD3-211ENST00000481999 MCM4P33991 863 aa17.69■□□□□ 0.42
CHD3-211ENST00000481999 SLC4A9Q96Q91 983 aa17.69■□□□□ 0.42
CHD3-211ENST00000481999 SASH1O94885 1247 aa17.69■□□□□ 0.42
CHD3-211ENST00000481999 PI4K2BQ8TCG2 481 aa17.69■□□□□ 0.42
CHD3-211ENST00000481999 USP26Q9BXU7 913 aa17.69■□□□□ 0.42
CHD3-211ENST00000481999 FOXD4L1Q9NU39 408 aa17.69■□□□□ 0.42
CHD3-211ENST00000481999 TUBGCP6Q96RT7 1819 aa17.69■□□□□ 0.42
CHD3-211ENST00000481999 LAMB4A4D0S4 1761 aa17.69■□□□□ 0.42
CHD3-211ENST00000481999 COL14A1Q05707 1796 aaKnown RBP17.69■□□□□ 0.42
CHD3-211ENST00000481999 DISP2A7MBM2 1401 aa17.68■□□□□ 0.42
CHD3-211ENST00000481999 TLR7Q9NYK1 1049 aaKnown RBP17.68■□□□□ 0.42
CHD3-211ENST00000481999 AFDNP55196 1824 aaKnown RBP17.68■□□□□ 0.42
CHD3-211ENST00000481999 EIF5BO60841 1220 aaKnown RBP17.68■□□□□ 0.42
CHD3-211ENST00000481999 PLBD2Q8NHP8 589 aa17.68■□□□□ 0.42
CHD3-211ENST00000481999 TNS2Q63HR2 1409 aa17.67■□□□□ 0.42
CHD3-211ENST00000481999 RAB11FIP3O75154 756 aa17.67■□□□□ 0.42
CHD3-211ENST00000481999 ACSBG1Q96GR2 724 aa17.67■□□□□ 0.42
CHD3-211ENST00000481999 STAP2Q9UGK3 403 aa17.67■□□□□ 0.42
CHD3-211ENST00000481999 PAPPAQ13219 1627 aa17.67■□□□□ 0.42
CHD3-211ENST00000481999 CCDC8Q9H0W5 538 aaPredicted RBP17.67■□□□□ 0.42
CHD3-211ENST00000481999 CCDC9Q9Y3X0 531 aaKnown RBP17.67■□□□□ 0.42
CHD3-211ENST00000481999 ITGB4P16144 1822 aa17.66■□□□□ 0.42
CHD3-211ENST00000481999 EXOC5O00471 708 aa17.66■□□□□ 0.42
CHD3-211ENST00000481999 PRIM1P49642 420 aaKnown RBP17.66■□□□□ 0.42
CHD3-211ENST00000481999 RTN4Q9NQC3 1192 aaKnown RBP17.66■□□□□ 0.42
CHD3-211ENST00000481999 L1TD1Q5T7N2 865 aaKnown RBP17.65■□□□□ 0.42
CHD3-211ENST00000481999 EAF2Q96CJ1 260 aaPredicted RBP17.65■□□□□ 0.42
CHD3-211ENST00000481999 CHMLP26374 656 aa17.65■□□□□ 0.42
CHD3-211ENST00000481999 AACSQ86V21 672 aa17.65■□□□□ 0.42
CHD3-211ENST00000481999 DDIT3P35638 169 aa17.64■□□□□ 0.41
CHD3-211ENST00000481999 CHMP3Q9Y3E7 222 aa17.64■□□□□ 0.41
CHD3-211ENST00000481999 PLCH1Q4KWH8 1693 aa17.64■□□□□ 0.41
CHD3-211ENST00000481999 CASP7P55210 303 aa17.64■□□□□ 0.41
CHD3-211ENST00000481999 CASC1Q6TDU7 716 aa17.64■□□□□ 0.41
CHD3-211ENST00000481999 CLASRPQ8N2M8 674 aaKnown RBP17.64■□□□□ 0.41
CHD3-211ENST00000481999 ERC2O15083 957 aa17.63■□□□□ 0.41
CHD3-211ENST00000481999 ESYT1Q9BSJ8 1104 aa17.63■□□□□ 0.41
CHD3-211ENST00000481999 CIZ1Q9ULV3 898 aaPredicted RBP17.63■□□□□ 0.41
CHD3-211ENST00000481999 SPATA31A1Q5TZJ5 1347 aa17.63■□□□□ 0.41
CHD3-211ENST00000481999 MEX3CQ5U5Q3 659 aaKnown RBP17.63■□□□□ 0.41
CHD3-211ENST00000481999 SYNE4Q8N205 404 aa17.63■□□□□ 0.41
CHD3-211ENST00000481999 CCDC85AQ96PX6 553 aaPredicted RBP17.63■□□□□ 0.41
CHD3-211ENST00000481999 NDUFB9Q9Y6M9 179 aa17.63■□□□□ 0.41
CHD3-211ENST00000481999 GOLGB1Q14789 3259 aaKnown RBP17.63■□□□□ 0.41
CHD3-211ENST00000481999 LMBR1LQ6UX01 489 aa17.62■□□□□ 0.41
CHD3-211ENST00000481999 ANO2Q9NQ90 1003 aa17.62■□□□□ 0.41
CHD3-211ENST00000481999 PALD1Q9ULE6 856 aa17.62■□□□□ 0.41
CHD3-211ENST00000481999 BCL9O00512 1426 aa17.62■□□□□ 0.41
CHD3-211ENST00000481999 G3BP1Q13283 466 aaKnown RBP eCLIP17.62■□□□□ 0.41
CHD3-211ENST00000481999 C8orf37Q96NL8 207 aa17.62■□□□□ 0.41
CHD3-211ENST00000481999 DDX11L8A8MPP1 907 aa17.61■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms