RNA–Protein interactions for RNA: ENST00000481991.1

USP54-213, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 3

Gene USP54, Length 403 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-213ENST00000481991 ZNF541Q9H0D2 1346 aa10.52□□□□□ -0.73
USP54-213ENST00000481991 TIAM2Q8IVF5 1701 aa10.51□□□□□ -0.73
USP54-213ENST00000481991 FAM177BA6PVY3 158 aa10.51□□□□□ -0.73
USP54-213ENST00000481991 AOC2O75106 756 aa10.51□□□□□ -0.73
USP54-213ENST00000481991 LMOD1P29536 600 aaPredicted RBP10.51□□□□□ -0.73
USP54-213ENST00000481991 CCDC93Q567U6 631 aa10.51□□□□□ -0.73
USP54-213ENST00000481991 AKAP4Q5JQC9 854 aa10.51□□□□□ -0.73
USP54-213ENST00000481991 L3MBTL3Q96JM7 780 aaPredicted RBP10.51□□□□□ -0.73
USP54-213ENST00000481991 LTBP3Q9NS15 1303 aa10.51□□□□□ -0.73
USP54-213ENST00000481991 COL5A3P25940 1745 aaPredicted RBP10.5□□□□□ -0.73
USP54-213ENST00000481991 KIF20BQ96Q89 1820 aa10.5□□□□□ -0.73
USP54-213ENST00000481991 RNMTO43148 476 aaKnown RBP10.5□□□□□ -0.73
USP54-213ENST00000481991 SRGNP10124 158 aa10.5□□□□□ -0.73
USP54-213ENST00000481991 OLFM4Q6UX06 510 aa10.5□□□□□ -0.73
USP54-213ENST00000481991 MORC1Q86VD1 984 aa10.5□□□□□ -0.73
USP54-213ENST00000481991 SYNE4Q8N205 404 aa10.5□□□□□ -0.73
USP54-213ENST00000481991 JDP2Q8WYK2 163 aa10.5□□□□□ -0.73
USP54-213ENST00000481991 AFDNP55196 1824 aaKnown RBP10.49□□□□□ -0.73
USP54-213ENST00000481991 TRAF5O00463 557 aa10.49□□□□□ -0.73
USP54-213ENST00000481991 GTF2E1P29083 439 aaPredicted RBP10.49□□□□□ -0.73
USP54-213ENST00000481991 EIF6P56537 245 aaKnown RBP10.49□□□□□ -0.73
USP54-213ENST00000481991 FKBP4Q02790 459 aaKnown RBP eCLIP10.49□□□□□ -0.73
USP54-213ENST00000481991 NBPF5PQ86XG9 351 aaPredicted RBP10.49□□□□□ -0.73
USP54-213ENST00000481991 A1BGP04217 495 aa10.48□□□□□ -0.73
USP54-213ENST00000481991 HMOX1P09601 288 aa10.48□□□□□ -0.73
USP54-213ENST00000481991 EIF5P55010 431 aaKnown RBP10.48□□□□□ -0.73
USP54-213ENST00000481991 RTKN2Q8IZC4 609 aa10.48□□□□□ -0.73
USP54-213ENST00000481991 ZNF408Q9H9D4 720 aa10.48□□□□□ -0.73
USP54-213ENST00000481991 ZNF831Q5JPB2 1677 aa10.47□□□□□ -0.73
USP54-213ENST00000481991 TCERG1O14776 1098 aaKnown RBP10.47□□□□□ -0.73
USP54-213ENST00000481991 NPR1P16066 1061 aa10.47□□□□□ -0.73
USP54-213ENST00000481991 IARSP41252 1262 aaKnown RBP10.47□□□□□ -0.73
USP54-213ENST00000481991 EPS15P42566 896 aa10.47□□□□□ -0.73
USP54-213ENST00000481991 VSIG10Q8N0Z9 540 aa10.47□□□□□ -0.73
USP54-213ENST00000481991 GPC2Q8N158 579 aa10.47□□□□□ -0.73
USP54-213ENST00000481991 MAP2K2P36507 400 aa10.46□□□□□ -0.73
USP54-213ENST00000481991 SOX10P56693 466 aa10.46□□□□□ -0.73
USP54-213ENST00000481991 CST9Q5W186 159 aa10.46□□□□□ -0.73
USP54-213ENST00000481991 DZIP3Q86Y13 1208 aaKnown RBP10.46□□□□□ -0.73
USP54-213ENST00000481991 TEX13AQ9BXU3 409 aaPredicted RBP10.46□□□□□ -0.73
USP54-213ENST00000481991 FZD9O00144 591 aa10.45□□□□□ -0.74
USP54-213ENST00000481991 CA12O43570 354 aa10.45□□□□□ -0.74
USP54-213ENST00000481991 CELF2O95319 508 aaKnown RBP10.45□□□□□ -0.74
USP54-213ENST00000481991 PIP4K2AP48426 406 aaPredicted RBP10.45□□□□□ -0.74
USP54-213ENST00000481991 TEFQ10587 303 aa10.45□□□□□ -0.74
USP54-213ENST00000481991 TPTE2Q6XPS3 522 aa10.45□□□□□ -0.74
USP54-213ENST00000481991 C7orf43Q8WVR3 580 aa10.45□□□□□ -0.74
USP54-213ENST00000481991 PANK3Q9H999 370 aa10.45□□□□□ -0.74
USP54-213ENST00000481991 TLL2Q9Y6L7 1015 aa10.45□□□□□ -0.74
USP54-213ENST00000481991 SLX4Q8IY92 1834 aa10.44□□□□□ -0.74
USP54-213ENST00000481991 ALDH1B1P30837 517 aa10.44□□□□□ -0.74
USP54-213ENST00000481991 MTHFSDQ2M296 383 aaKnown RBP10.44□□□□□ -0.74
USP54-213ENST00000481991 CIAPIN1Q6FI81 312 aa10.44□□□□□ -0.74
USP54-213ENST00000481991 LARGE2Q8N3Y3 721 aa10.44□□□□□ -0.74
USP54-213ENST00000481991 ZNF496Q96IT1 587 aaPredicted RBP10.44□□□□□ -0.74
USP54-213ENST00000481991 DICER1Q9UPY3 1922 aaKnown RBP10.44□□□□□ -0.74
USP54-213ENST00000481991 VIRMAQ69YN4 1812 aaKnown RBP10.44□□□□□ -0.74
USP54-213ENST00000481991 TJP1Q07157 1748 aa10.44□□□□□ -0.74
USP54-213ENST00000481991 CAMTA2O94983 1202 aa10.43□□□□□ -0.74
USP54-213ENST00000481991 IL13P35225 146 aa10.43□□□□□ -0.74
USP54-213ENST00000481991 IL6STP40189 918 aaPredicted RBP10.43□□□□□ -0.74
USP54-213ENST00000481991 NIP7Q9Y221 180 aaKnown RBP eCLIP10.43□□□□□ -0.74
USP54-213ENST00000481991 FER1L6Q2WGJ9 1857 aa10.42□□□□□ -0.74
USP54-213ENST00000481991 SCN4AP35499 1836 aa10.42□□□□□ -0.74
USP54-213ENST00000481991 CNGB1Q14028 1251 aaPredicted RBP10.42□□□□□ -0.74
USP54-213ENST00000481991 USP50Q70EL3 339 aaPredicted RBP10.42□□□□□ -0.74
USP54-213ENST00000481991 TMX4Q9H1E5 349 aaPredicted RBP10.42□□□□□ -0.74
USP54-213ENST00000481991 ZNF652Q9Y2D9 606 aa10.42□□□□□ -0.74
USP54-213ENST00000481991 DLEC1Q9Y238 1755 aa10.42□□□□□ -0.74
USP54-213ENST00000481991 NRXN2Q9P2S2 1712 aa10.41□□□□□ -0.74
USP54-213ENST00000481991 CASP8AP2Q9UKL3 1982 aa10.41□□□□□ -0.74
USP54-213ENST00000481991 ZNF790Q6PG37 636 aa10.41□□□□□ -0.74
USP54-213ENST00000481991 SAPCD2Q86UD0 394 aa10.41□□□□□ -0.74
USP54-213ENST00000481991 NIM1KQ8IY84 436 aa10.41□□□□□ -0.74
USP54-213ENST00000481991 NGEFQ8N5V2 710 aa10.41□□□□□ -0.74
USP54-213ENST00000481991 FMNL2Q96PY5 1086 aa10.41□□□□□ -0.74
USP54-213ENST00000481991 GLIS2Q9BZE0 524 aaPredicted RBP10.41□□□□□ -0.74
USP54-213ENST00000481991 ADAMTS7Q9UKP4 1686 aa10.41□□□□□ -0.74
USP54-213ENST00000481991 BRPF1P55201 1214 aaPredicted RBP10.4□□□□□ -0.74
USP54-213ENST00000481991 RPGRQ92834 1020 aaKnown RBP10.4□□□□□ -0.74
USP54-213ENST00000481991 USP16Q9Y5T5 823 aa10.4□□□□□ -0.74
USP54-213ENST00000481991 CACNA1SQ13698 1873 aa10.4□□□□□ -0.75
USP54-213ENST00000481991 BTBD11A6QL63 1104 aa10.39□□□□□ -0.75
USP54-213ENST00000481991 SCNN1DP51172 638 aa10.39□□□□□ -0.75
USP54-213ENST00000481991 BCL2L13Q9BXK5 485 aa10.39□□□□□ -0.75
USP54-213ENST00000481991 ADARB2Q9NS39 739 aaKnown RBP10.39□□□□□ -0.75
USP54-213ENST00000481991 KNSTRNQ9Y448 316 aa10.39□□□□□ -0.75
USP54-213ENST00000481991 HEG1Q9ULI3 1381 aa10.39□□□□□ -0.75
USP54-213ENST00000481991 ANKRD31Q8N7Z5 1873 aa10.38□□□□□ -0.75
USP54-213ENST00000481991 GNAT3A8MTJ3 354 aa10.38□□□□□ -0.75
USP54-213ENST00000481991 U2SURPO15042 1029 aaKnown RBP10.38□□□□□ -0.75
USP54-213ENST00000481991 PPIP5K2O43314 1243 aa10.38□□□□□ -0.75
USP54-213ENST00000481991 KCNQ3O43525 872 aa10.38□□□□□ -0.75
USP54-213ENST00000481991 TRPA1O75762 1119 aa10.38□□□□□ -0.75
USP54-213ENST00000481991 PRPF38BQ5VTL8 546 aaKnown RBP10.38□□□□□ -0.75
USP54-213ENST00000481991 CLEC4GQ6UXB4 293 aa10.38□□□□□ -0.75
USP54-213ENST00000481991 ZIC5Q96T25 663 aa10.38□□□□□ -0.75
USP54-213ENST00000481991 PSMD1Q99460 953 aa10.38□□□□□ -0.75
USP54-213ENST00000481991 ANKRD26Q9UPS8 1709 aa10.38□□□□□ -0.75
USP54-213ENST00000481991 HUNKP57058 714 aa10.37□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms