RNA–Protein interactions for RNA: ENST00000471455.1

CPSF4-211, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 5

Gene CPSF4, Length 569 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-211ENST00000471455 MICALL2Q8IY33 904 aa12.4□□□□□ -0.42
CPSF4-211ENST00000471455 NFATC2IPQ8NCF5 419 aa12.4□□□□□ -0.42
CPSF4-211ENST00000471455 RBM46Q8TBY0 533 aaKnown RBP12.4□□□□□ -0.42
CPSF4-211ENST00000471455 MYH14Q7Z406 1995 aaKnown RBP12.39□□□□□ -0.43
CPSF4-211ENST00000471455 HSPA5P11021 654 aaKnown RBP12.39□□□□□ -0.43
CPSF4-211ENST00000471455 AKAP4Q5JQC9 854 aa12.39□□□□□ -0.43
CPSF4-211ENST00000471455 C9orf131Q5VYM1 1079 aa12.39□□□□□ -0.43
CPSF4-211ENST00000471455 TJP1Q07157 1748 aa12.39□□□□□ -0.43
CPSF4-211ENST00000471455 PCGF6Q9BYE7 350 aa12.38□□□□□ -0.43
CPSF4-211ENST00000471455 SRP68Q9UHB9 627 aaKnown RBP12.38□□□□□ -0.43
CPSF4-211ENST00000471455 SCN11AQ9UI33 1791 aa12.38□□□□□ -0.43
CPSF4-211ENST00000471455 ZC3H4Q9UPT8 1303 aaKnown RBP12.37□□□□□ -0.43
CPSF4-211ENST00000471455 IL13P35225 146 aa12.37□□□□□ -0.43
CPSF4-211ENST00000471455 DDR1Q08345 913 aa12.37□□□□□ -0.43
CPSF4-211ENST00000471455 FSTL1Q12841 308 aa12.37□□□□□ -0.43
CPSF4-211ENST00000471455 SLAIN1Q8ND83 568 aa12.37□□□□□ -0.43
CPSF4-211ENST00000471455 SLC52A2Q9HAB3 445 aa12.37□□□□□ -0.43
CPSF4-211ENST00000471455 NMRK2Q9NPI5 230 aa12.37□□□□□ -0.43
CPSF4-211ENST00000471455 RNF181Q9P0P0 153 aa12.37□□□□□ -0.43
CPSF4-211ENST00000471455 MRC1P22897 1456 aa12.37□□□□□ -0.43
CPSF4-211ENST00000471455 POLRMTO00411 1230 aaKnown RBP12.36□□□□□ -0.43
CPSF4-211ENST00000471455 PPP1R37O75864 691 aa12.36□□□□□ -0.43
CPSF4-211ENST00000471455 KCNA3P22001 575 aa12.36□□□□□ -0.43
CPSF4-211ENST00000471455 LCE2DQ5TA82 110 aaPredicted RBP12.36□□□□□ -0.43
CPSF4-211ENST00000471455 SOS1Q07889 1333 aaPredicted RBP12.36□□□□□ -0.43
CPSF4-211ENST00000471455 TNRC6CQ9HCJ0 1690 aaKnown RBP12.35□□□□□ -0.43
CPSF4-211ENST00000471455 COL15A1P39059 1388 aa12.35□□□□□ -0.43
CPSF4-211ENST00000471455 INTS5Q6P9B9 1019 aaKnown RBP12.35□□□□□ -0.43
CPSF4-211ENST00000471455 TMEM92Q6UXU6 159 aa12.35□□□□□ -0.43
CPSF4-211ENST00000471455 DNAJC10Q8IXB1 793 aa12.35□□□□□ -0.43
CPSF4-211ENST00000471455 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.35□□□□□ -0.43
CPSF4-211ENST00000471455 WDR90Q96KV7 1748 aa12.34□□□□□ -0.43
CPSF4-211ENST00000471455 KCPQ6ZWJ8 1503 aa12.34□□□□□ -0.43
CPSF4-211ENST00000471455 TM4SF1P30408 202 aa12.34□□□□□ -0.43
CPSF4-211ENST00000471455 USPL1Q5W0Q7 1092 aa12.34□□□□□ -0.43
CPSF4-211ENST00000471455 C3orf67Q6ZVT6 689 aa12.34□□□□□ -0.43
CPSF4-211ENST00000471455 VSIG10Q8N0Z9 540 aa12.34□□□□□ -0.43
CPSF4-211ENST00000471455 NARFQ9UHQ1 456 aa12.34□□□□□ -0.43
CPSF4-211ENST00000471455 A0A087WZG4 1122 aa12.33□□□□□ -0.44
CPSF4-211ENST00000471455 RNMTO43148 476 aaKnown RBP12.33□□□□□ -0.44
CPSF4-211ENST00000471455 CHRNA5P30532 468 aa12.33□□□□□ -0.44
CPSF4-211ENST00000471455 TTC5Q8N0Z6 440 aa12.33□□□□□ -0.44
CPSF4-211ENST00000471455 SMC1BQ8NDV3 1235 aa12.33□□□□□ -0.44
CPSF4-211ENST00000471455 ADAMTS7Q9UKP4 1686 aa12.32□□□□□ -0.44
CPSF4-211ENST00000471455 STARD3NLO95772 234 aa12.32□□□□□ -0.44
CPSF4-211ENST00000471455 CYP19A1P11511 503 aaPredicted RBP12.32□□□□□ -0.44
CPSF4-211ENST00000471455 PDZRN3Q9UPQ7 1066 aa12.32□□□□□ -0.44
CPSF4-211ENST00000471455 DIAPH1O60610 1272 aaKnown RBP12.31□□□□□ -0.44
CPSF4-211ENST00000471455 LMNB1P20700 586 aa12.31□□□□□ -0.44
CPSF4-211ENST00000471455 NFIXQ14938 502 aa12.31□□□□□ -0.44
CPSF4-211ENST00000471455 NPM2Q86SE8 214 aaKnown RBP12.31□□□□□ -0.44
CPSF4-211ENST00000471455 DNAJC5GQ8N7S2 189 aa12.31□□□□□ -0.44
CPSF4-211ENST00000471455 KLRG1Q96E93 195 aa12.31□□□□□ -0.44
CPSF4-211ENST00000471455 ZBTB1Q9Y2K1 713 aa12.31□□□□□ -0.44
CPSF4-211ENST00000471455 H0YIN7 160 aa12.3□□□□□ -0.44
CPSF4-211ENST00000471455 SERPINB2P05120 415 aa12.3□□□□□ -0.44
CPSF4-211ENST00000471455 HMOX1P09601 288 aa12.3□□□□□ -0.44
CPSF4-211ENST00000471455 SLC39A6Q13433 755 aa12.3□□□□□ -0.44
CPSF4-211ENST00000471455 TTLL6Q8N841 843 aa12.3□□□□□ -0.44
CPSF4-211ENST00000471455 CCER1Q8TC90 406 aaPredicted RBP12.3□□□□□ -0.44
CPSF4-211ENST00000471455 TEX13AQ9BXU3 409 aaPredicted RBP12.3□□□□□ -0.44
CPSF4-211ENST00000471455 RRAGCQ9HB90 399 aa12.3□□□□□ -0.44
CPSF4-211ENST00000471455 LGR6Q9HBX8 967 aa12.3□□□□□ -0.44
CPSF4-211ENST00000471455 NRXN2Q9P2S2 1712 aa12.3□□□□□ -0.44
CPSF4-211ENST00000471455 DLEC1Q9Y238 1755 aa12.3□□□□□ -0.44
CPSF4-211ENST00000471455 TEFQ10587 303 aa12.29□□□□□ -0.44
CPSF4-211ENST00000471455 C2CD5Q86YS7 1000 aa12.29□□□□□ -0.44
CPSF4-211ENST00000471455 SBF1O95248 1867 aa12.29□□□□□ -0.44
CPSF4-211ENST00000471455 UBR2Q8IWV8 1755 aa12.28□□□□□ -0.44
CPSF4-211ENST00000471455 AFDNP55196 1824 aaKnown RBP12.28□□□□□ -0.44
CPSF4-211ENST00000471455 VIRMAQ69YN4 1812 aaKnown RBP12.28□□□□□ -0.44
CPSF4-211ENST00000471455 VEGFAP15692 232 aaPredicted RBP12.28□□□□□ -0.44
CPSF4-211ENST00000471455 CANXP27824 592 aaKnown RBP12.28□□□□□ -0.44
CPSF4-211ENST00000471455 RASSF7Q02833 373 aa12.28□□□□□ -0.44
CPSF4-211ENST00000471455 MTHFSDQ2M296 383 aaKnown RBP12.28□□□□□ -0.44
CPSF4-211ENST00000471455 JMYQ8N9B5 988 aa12.28□□□□□ -0.44
CPSF4-211ENST00000471455 GAS2L2Q8NHY3 880 aa12.28□□□□□ -0.44
CPSF4-211ENST00000471455 GLTPD2A6NH11 291 aa12.27□□□□□ -0.45
CPSF4-211ENST00000471455 PDE6BP35913 854 aa12.27□□□□□ -0.45
CPSF4-211ENST00000471455 KIF7Q2M1P5 1343 aa12.27□□□□□ -0.45
CPSF4-211ENST00000471455 CARMIL3Q8ND23 1372 aa12.27□□□□□ -0.45
CPSF4-211ENST00000471455 TIAM2Q8IVF5 1701 aa12.26□□□□□ -0.45
CPSF4-211ENST00000471455 NPHP1O15259 732 aa12.26□□□□□ -0.45
CPSF4-211ENST00000471455 GTPBP6O43824 516 aaPredicted RBP12.26□□□□□ -0.45
CPSF4-211ENST00000471455 EIF5P55010 431 aaKnown RBP12.26□□□□□ -0.45
CPSF4-211ENST00000471455 BCL2L12Q9HB09 334 aa12.26□□□□□ -0.45
CPSF4-211ENST00000471455 SCN7AQ01118 1682 aa12.26□□□□□ -0.45
CPSF4-211ENST00000471455 GNAT3A8MTJ3 354 aa12.25□□□□□ -0.45
CPSF4-211ENST00000471455 G3V3G9 751 aa12.25□□□□□ -0.45
CPSF4-211ENST00000471455 CC2D1BQ5T0F9 858 aaKnown RBP12.25□□□□□ -0.45
CPSF4-211ENST00000471455 SOGA3Q5TF21 947 aa12.25□□□□□ -0.45
CPSF4-211ENST00000471455 BICDL1Q6ZP65 573 aa12.25□□□□□ -0.45
CPSF4-211ENST00000471455 BRIP1Q9BX63 1249 aa12.25□□□□□ -0.45
CPSF4-211ENST00000471455 NPC1L1Q9UHC9 1359 aa12.25□□□□□ -0.45
CPSF4-211ENST00000471455 HEG1Q9ULI3 1381 aa12.25□□□□□ -0.45
CPSF4-211ENST00000471455 U2SURPO15042 1029 aaKnown RBP12.24□□□□□ -0.45
CPSF4-211ENST00000471455 IL6STP40189 918 aaPredicted RBP12.24□□□□□ -0.45
CPSF4-211ENST00000471455 ZNF790Q6PG37 636 aa12.24□□□□□ -0.45
CPSF4-211ENST00000471455 ZNF622Q969S3 477 aaKnown RBP eCLIP12.24□□□□□ -0.45
CPSF4-211ENST00000471455 FMNL2Q96PY5 1086 aa12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms