RNA–Protein interactions for RNA: ENST00000470463.1

SND1-208, Transcript of staphylococcal nuclease and tudor domain containing 1, human

TSL 4

Gene SND1, Length 530 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SND1-208	ENST00000470463	LRP10	Q7Z4F1	713 aa		13.63	□□□□□ -0.23
SND1-208	ENST00000470463	SSH3	Q8TE77	659 aa		13.63	□□□□□ -0.23
SND1-208	ENST00000470463	SMARCC1	Q92922	1105 aa	Predicted RBP	13.63	□□□□□ -0.23
SND1-208	ENST00000470463	LNPK	Q9C0E8	428 aa		13.63	□□□□□ -0.23
SND1-208	ENST00000470463	LRRFIP2	Q9Y608	721 aa	Known RBP	13.63	□□□□□ -0.23
SND1-208	ENST00000470463	COL15A1	P39059	1388 aa		13.62	□□□□□ -0.23
SND1-208	ENST00000470463	GRM8	O00222	908 aa		13.62	□□□□□ -0.23
SND1-208	ENST00000470463	ATG3	Q9NT62	314 aa		13.62	□□□□□ -0.23
SND1-208	ENST00000470463	ITGB4	P16144	1822 aa		13.62	□□□□□ -0.23
SND1-208	ENST00000470463	PSD	A5PKW4	1024 aa	Predicted RBP	13.61	□□□□□ -0.23
SND1-208	ENST00000470463	POLA2	Q14181	598 aa		13.61	□□□□□ -0.23
SND1-208	ENST00000470463	NPM2	Q86SE8	214 aa	Known RBP	13.61	□□□□□ -0.23
SND1-208	ENST00000470463	NEURL1B	A8MQ27	555 aa		13.6	□□□□□ -0.23
SND1-208	ENST00000470463	ERC1	Q8IUD2	1116 aa		13.6	□□□□□ -0.23
SND1-208	ENST00000470463	RBM42	Q9BTD8	480 aa	Known RBP	13.6	□□□□□ -0.23
SND1-208	ENST00000470463	LRRCC1	Q9C099	1032 aa		13.6	□□□□□ -0.23
SND1-208	ENST00000470463	ASAP1	Q9ULH1	1129 aa		13.6	□□□□□ -0.23
SND1-208	ENST00000470463	NBPF7	P0C2Y1	421 aa	Predicted RBP	13.59	□□□□□ -0.23
SND1-208	ENST00000470463	PRIM1	P49642	420 aa	Known RBP	13.59	□□□□□ -0.23
SND1-208	ENST00000470463	GCKR	Q14397	625 aa		13.59	□□□□□ -0.23
SND1-208	ENST00000470463	KIF6	Q6ZMV9	814 aa		13.59	□□□□□ -0.23
SND1-208	ENST00000470463	SKAP1	Q86WV1	359 aa		13.59	□□□□□ -0.23
SND1-208	ENST00000470463	SYTL4	Q96C24	671 aa	Predicted RBP	13.59	□□□□□ -0.23
SND1-208	ENST00000470463	DDRGK1	Q96HY6	314 aa		13.59	□□□□□ -0.23
SND1-208	ENST00000470463	NBPF26	B4DH59	902 aa		13.58	□□□□□ -0.24
SND1-208	ENST00000470463	SRGAP3	O43295	1099 aa		13.58	□□□□□ -0.24
SND1-208	ENST00000470463	EN1	Q05925	392 aa	Predicted RBP	13.58	□□□□□ -0.24
SND1-208	ENST00000470463	FAM98C	Q17RN3	349 aa	Known RBP	13.58	□□□□□ -0.24
SND1-208	ENST00000470463	HSP90AB3P	Q58FF7	597 aa		13.58	□□□□□ -0.24
SND1-208	ENST00000470463	NBPF14	Q5TI25	921 aa		13.58	□□□□□ -0.24
SND1-208	ENST00000470463	NBPF10	Q6P3W6	841 aa	Known RBP	13.58	□□□□□ -0.24
SND1-208	ENST00000470463	PPP1R42	Q7Z4L9	355 aa		13.58	□□□□□ -0.24
SND1-208	ENST00000470463	NBPF15	Q8N660	670 aa		13.58	□□□□□ -0.24
SND1-208	ENST00000470463	MARCH10	Q8NA82	808 aa	Predicted RBP	13.58	□□□□□ -0.24
SND1-208	ENST00000470463	CCDC191	Q8NCU4	936 aa		13.58	□□□□□ -0.24
SND1-208	ENST00000470463	KIF1BP	Q96EK5	621 aa		13.58	□□□□□ -0.24
SND1-208	ENST00000470463	MYD88	Q99836	296 aa		13.58	□□□□□ -0.24
SND1-208	ENST00000470463	OSBPL3	Q9H4L5	887 aa		13.58	□□□□□ -0.24
SND1-208	ENST00000470463	NOP58	Q9Y2X3	529 aa	Known RBP	13.58	□□□□□ -0.24
SND1-208	ENST00000470463	DOT1L	Q8TEK3	1739 aa		13.58	□□□□□ -0.24
SND1-208	ENST00000470463	PNMA6E	A0A0J9YXQ4	647 aa		13.57	□□□□□ -0.24
SND1-208	ENST00000470463	DCAF8L1	A6NGE4	600 aa		13.57	□□□□□ -0.24
SND1-208	ENST00000470463	A1BG	P04217	495 aa		13.57	□□□□□ -0.24
SND1-208	ENST00000470463	IGKV5-2	P06315	115 aa		13.57	□□□□□ -0.24
SND1-208	ENST00000470463	HMGB2	P26583	209 aa	Known RBP	13.57	□□□□□ -0.24
SND1-208	ENST00000470463	TRIM28	Q13263	835 aa	Known RBP	13.57	□□□□□ -0.24
SND1-208	ENST00000470463	CWF19L2	Q2TBE0	894 aa	Known RBP	13.57	□□□□□ -0.24
SND1-208	ENST00000470463	AOX1	Q06278	1338 aa		13.57	□□□□□ -0.24
SND1-208	ENST00000470463	CIC	Q96RK0	1608 aa	Predicted RBP	13.57	□□□□□ -0.24
SND1-208	ENST00000470463	CYP19A1	P11511	503 aa	Predicted RBP	13.56	□□□□□ -0.24
SND1-208	ENST00000470463	IL6ST	P40189	918 aa	Predicted RBP	13.56	□□□□□ -0.24
SND1-208	ENST00000470463	CASC1	Q6TDU7	716 aa		13.56	□□□□□ -0.24
SND1-208	ENST00000470463	PLEKHM2	Q8IWE5	1019 aa		13.56	□□□□□ -0.24
SND1-208	ENST00000470463	DNAJC10	Q8IXB1	793 aa		13.56	□□□□□ -0.24
SND1-208	ENST00000470463	CWC25	Q9NXE8	425 aa	Predicted RBP	13.56	□□□□□ -0.24
SND1-208	ENST00000470463	ARFGEF2	Q9Y6D5	1785 aa		13.55	□□□□□ -0.24
SND1-208	ENST00000470463	ERVV-1	B6SEH8	477 aa		13.55	□□□□□ -0.24
SND1-208	ENST00000470463	SURF6	O75683	361 aa	Known RBP	13.55	□□□□□ -0.24
SND1-208	ENST00000470463	R3HDM1	Q15032	1099 aa	Known RBP	13.55	□□□□□ -0.24
SND1-208	ENST00000470463	ZNF831	Q5JPB2	1677 aa		13.55	□□□□□ -0.24
SND1-208	ENST00000470463		A0A087WZG4	1122 aa		13.54	□□□□□ -0.24
SND1-208	ENST00000470463	TCIRG1	Q13488	830 aa		13.54	□□□□□ -0.24
SND1-208	ENST00000470463	EXOC6B	Q9Y2D4	811 aa		13.54	□□□□□ -0.24
SND1-208	ENST00000470463	EP400	Q96L91	3159 aa		13.54	□□□□□ -0.24
SND1-208	ENST00000470463	THSD7A	Q9UPZ6	1657 aa		13.53	□□□□□ -0.24
SND1-208	ENST00000470463	LOC102724428	A0A0B4J2F2	783 aa		13.53	□□□□□ -0.24
SND1-208	ENST00000470463		H7C1W4	665 aa		13.53	□□□□□ -0.24
SND1-208	ENST00000470463	RGL2	O15211	777 aa		13.53	□□□□□ -0.24
SND1-208	ENST00000470463	SIK1	P57059	783 aa		13.53	□□□□□ -0.24
SND1-208	ENST00000470463	TTC22	Q5TAA0	569 aa		13.53	□□□□□ -0.24
SND1-208	ENST00000470463	FAM196A	Q6ZSG2	479 aa		13.53	□□□□□ -0.24
SND1-208	ENST00000470463	RHPN1	Q8TCX5	695 aa		13.53	□□□□□ -0.24
SND1-208	ENST00000470463	IPO9	Q96P70	1041 aa	Known RBP	13.53	□□□□□ -0.24
SND1-208	ENST00000470463	MAP3K15	Q6ZN16	1313 aa		13.53	□□□□□ -0.24
SND1-208	ENST00000470463	CDC45	O75419	566 aa		13.52	□□□□□ -0.25
SND1-208	ENST00000470463	HSP90B1	P14625	803 aa	Known RBP	13.52	□□□□□ -0.25
SND1-208	ENST00000470463	G3BP1	Q13283	466 aa	Known RBP eCLIP	13.52	□□□□□ -0.25	3e-8	■■■■□ 23
SND1-208	ENST00000470463	OS9	Q13438	667 aa	Predicted RBP	13.52	□□□□□ -0.25
SND1-208	ENST00000470463	RABL6	Q3YEC7	729 aa	Predicted RBP	13.52	□□□□□ -0.25
SND1-208	ENST00000470463	GIGYF2	Q6Y7W6	1299 aa	Known RBP	13.52	□□□□□ -0.25
SND1-208	ENST00000470463	CLASRP	Q8N2M8	674 aa	Known RBP	13.52	□□□□□ -0.25
SND1-208	ENST00000470463	GPATCH3	Q96I76	525 aa		13.52	□□□□□ -0.25
SND1-208	ENST00000470463	SUCLG2	Q96I99	432 aa		13.52	□□□□□ -0.25
SND1-208	ENST00000470463	BICC1	Q9H694	974 aa	Known RBP	13.52	□□□□□ -0.25
SND1-208	ENST00000470463	CCDC87	Q9NVE4	849 aa		13.52	□□□□□ -0.25
SND1-208	ENST00000470463	STAP2	Q9UGK3	403 aa		13.52	□□□□□ -0.25
SND1-208	ENST00000470463	PALLD	Q8WX93	1383 aa		13.52	□□□□□ -0.25
SND1-208	ENST00000470463	NUP188	Q5SRE5	1749 aa		13.52	□□□□□ -0.25
SND1-208	ENST00000470463	MX1	P20591	662 aa		13.51	□□□□□ -0.25
SND1-208	ENST00000470463	ATP6V1A	P38606	617 aa		13.51	□□□□□ -0.25
SND1-208	ENST00000470463	PIP4K2A	P48426	406 aa	Predicted RBP	13.51	□□□□□ -0.25
SND1-208	ENST00000470463	PDE1A	P54750	535 aa		13.51	□□□□□ -0.25
SND1-208	ENST00000470463	TTLL7	Q6ZT98	887 aa		13.51	□□□□□ -0.25
SND1-208	ENST00000470463	ISCA1	Q9BUE6	129 aa		13.51	□□□□□ -0.25
SND1-208	ENST00000470463	AFDN	P55196	1824 aa	Known RBP	13.5	□□□□□ -0.25
SND1-208	ENST00000470463	APBB1	O00213	710 aa		13.5	□□□□□ -0.25
SND1-208	ENST00000470463	YY1	P25490	414 aa		13.5	□□□□□ -0.25
SND1-208	ENST00000470463	UBE3B	Q7Z3V4	1068 aa		13.5	□□□□□ -0.25
SND1-208	ENST00000470463	ACSBG1	Q96GR2	724 aa		13.5	□□□□□ -0.25
SND1-208	ENST00000470463	ZBTB3	Q9H5J0	574 aa		13.5	□□□□□ -0.25

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