RNA–Protein interactions for RNA: ENST00000468792.1

COL6A3-208, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 329 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-208ENST00000468792 PLCH1Q4KWH8 1693 aa9.36□□□□□ -0.91
COL6A3-208ENST00000468792 PRAMEF22A3QJZ6 481 aa9.36□□□□□ -0.91
COL6A3-208ENST00000468792 NEURL1BA8MQ27 555 aa9.36□□□□□ -0.91
COL6A3-208ENST00000468792 SMARCA5O60264 1052 aaPredicted RBP9.36□□□□□ -0.91
COL6A3-208ENST00000468792 SURF6O75683 361 aaKnown RBP9.36□□□□□ -0.91
COL6A3-208ENST00000468792 IGKV5-2P06315 115 aa9.36□□□□□ -0.91
COL6A3-208ENST00000468792 C1QBPQ07021 282 aaKnown RBP9.36□□□□□ -0.91
COL6A3-208ENST00000468792 COPS6Q7L5N1 327 aa9.36□□□□□ -0.91
COL6A3-208ENST00000468792 RIC3Q7Z5B4 369 aa9.36□□□□□ -0.91
COL6A3-208ENST00000468792 PLBD2Q8NHP8 589 aa9.36□□□□□ -0.91
COL6A3-208ENST00000468792 RHPN1Q8TCX5 695 aa9.36□□□□□ -0.91
COL6A3-208ENST00000468792 OTUD7AQ8TE49 926 aaPredicted RBP9.36□□□□□ -0.91
COL6A3-208ENST00000468792 KIF2CQ99661 725 aa9.36□□□□□ -0.91
COL6A3-208ENST00000468792 USP26Q9BXU7 913 aa9.36□□□□□ -0.91
COL6A3-208ENST00000468792 USP16Q9Y5T5 823 aa9.36□□□□□ -0.91
COL6A3-208ENST00000468792 ROBO1Q9Y6N7 1651 aa9.36□□□□□ -0.91
COL6A3-208ENST00000468792 ANXA1P04083 346 aa9.35□□□□□ -0.91
COL6A3-208ENST00000468792 GCKRQ14397 625 aa9.35□□□□□ -0.91
COL6A3-208ENST00000468792 XAGE3Q8WTP9 111 aa9.35□□□□□ -0.91
COL6A3-208ENST00000468792 THRAP3Q9Y2W1 955 aaKnown RBP9.35□□□□□ -0.91
COL6A3-208ENST00000468792 ERC2O15083 957 aa9.34□□□□□ -0.91
COL6A3-208ENST00000468792 MKRN4PQ13434 485 aaPredicted RBP9.34□□□□□ -0.91
COL6A3-208ENST00000468792 RABEP1Q15276 862 aa9.34□□□□□ -0.91
COL6A3-208ENST00000468792 RABL6Q3YEC7 729 aaPredicted RBP9.34□□□□□ -0.91
COL6A3-208ENST00000468792 TICAM2Q86XR7 235 aa9.34□□□□□ -0.91
COL6A3-208ENST00000468792 HSCBQ8IWL3 235 aa9.34□□□□□ -0.91
COL6A3-208ENST00000468792 KAZALD1Q96I82 304 aa9.34□□□□□ -0.91
COL6A3-208ENST00000468792 SLC4A3P48751 1232 aa9.33□□□□□ -0.92
COL6A3-208ENST00000468792 ANAPC15P60006 121 aa9.33□□□□□ -0.92
COL6A3-208ENST00000468792 TRIM28Q13263 835 aaKnown RBP9.33□□□□□ -0.92
COL6A3-208ENST00000468792 CWF19L2Q2TBE0 894 aaKnown RBP9.33□□□□□ -0.92
COL6A3-208ENST00000468792 RTL5Q5HYW3 569 aaPredicted RBP9.33□□□□□ -0.92
COL6A3-208ENST00000468792 CLASRPQ8N2M8 674 aaKnown RBP9.33□□□□□ -0.92
COL6A3-208ENST00000468792 PI4K2BQ8TCG2 481 aa9.33□□□□□ -0.92
COL6A3-208ENST00000468792 COPRSQ9NQ92 184 aa9.33□□□□□ -0.92
COL6A3-208ENST00000468792 BTG4Q9NY30 223 aa9.33□□□□□ -0.92
COL6A3-208ENST00000468792 CIZ1Q9ULV3 898 aaPredicted RBP9.33□□□□□ -0.92
COL6A3-208ENST00000468792 COL16A1Q07092 1604 aaPredicted RBP9.32□□□□□ -0.92
COL6A3-208ENST00000468792 GLRX3O76003 335 aaKnown RBP9.32□□□□□ -0.92
COL6A3-208ENST00000468792 CASP7P55210 303 aa9.32□□□□□ -0.92
COL6A3-208ENST00000468792 GPATCH3Q96I76 525 aa9.32□□□□□ -0.92
COL6A3-208ENST00000468792 SUCLG2Q96I99 432 aa9.32□□□□□ -0.92
COL6A3-208ENST00000468792 STRN4Q9NRL3 753 aa9.32□□□□□ -0.92
COL6A3-208ENST00000468792 TMOD3Q9NYL9 352 aa9.32□□□□□ -0.92
COL6A3-208ENST00000468792 NBPF26B4DH59 902 aa9.31□□□□□ -0.92
COL6A3-208ENST00000468792 H7C1W4 665 aa9.31□□□□□ -0.92
COL6A3-208ENST00000468792 APBB1O00213 710 aa9.31□□□□□ -0.92
COL6A3-208ENST00000468792 MYL6BP14649 208 aa9.31□□□□□ -0.92
COL6A3-208ENST00000468792 CHMLP26374 656 aa9.31□□□□□ -0.92
COL6A3-208ENST00000468792 DDIT3P35638 169 aa9.31□□□□□ -0.92
COL6A3-208ENST00000468792 AIMP1Q12904 312 aaKnown RBP9.31□□□□□ -0.92
COL6A3-208ENST00000468792 NFKBIBQ15653 356 aa9.31□□□□□ -0.92
COL6A3-208ENST00000468792 NBPF14Q5TI25 921 aa9.31□□□□□ -0.92
COL6A3-208ENST00000468792 NBPF10Q6P3W6 841 aaKnown RBP9.31□□□□□ -0.92
COL6A3-208ENST00000468792 NBPF15Q8N660 670 aa9.31□□□□□ -0.92
COL6A3-208ENST00000468792 CCDC191Q8NCU4 936 aa9.31□□□□□ -0.92
COL6A3-208ENST00000468792 MYD88Q99836 296 aa9.31□□□□□ -0.92
COL6A3-208ENST00000468792 ESYT1Q9BSJ8 1104 aa9.31□□□□□ -0.92
COL6A3-208ENST00000468792 BICC1Q9H694 974 aaKnown RBP9.31□□□□□ -0.92
COL6A3-208ENST00000468792 ATG3Q9NT62 314 aa9.31□□□□□ -0.92
COL6A3-208ENST00000468792 CHMP5Q9NZZ3 219 aa9.31□□□□□ -0.92
COL6A3-208ENST00000468792 ARFGEF2Q9Y6D5 1785 aa9.31□□□□□ -0.92
COL6A3-208ENST00000468792 TOGARAM1Q9Y4F4 1720 aa9.31□□□□□ -0.92
COL6A3-208ENST00000468792 BCL9O00512 1426 aa9.31□□□□□ -0.92
COL6A3-208ENST00000468792 EXOC5O00471 708 aa9.3□□□□□ -0.92
COL6A3-208ENST00000468792 G3BP1Q13283 466 aaKnown RBP eCLIP9.3□□□□□ -0.92
COL6A3-208ENST00000468792 CNTROBQ8N137 903 aa9.3□□□□□ -0.92
COL6A3-208ENST00000468792 DDX54Q8TDD1 881 aaKnown RBP9.3□□□□□ -0.92
COL6A3-208ENST00000468792 ECHDC1Q9NTX5 307 aa9.3□□□□□ -0.92
COL6A3-208ENST00000468792 ZBTB12Q9Y330 459 aaPredicted RBP9.3□□□□□ -0.92
COL6A3-208ENST00000468792 NUP188Q5SRE5 1749 aa9.3□□□□□ -0.92
COL6A3-208ENST00000468792 WNK3Q9BYP7 1800 aa9.29□□□□□ -0.92
COL6A3-208ENST00000468792 NWD2Q9ULI1 1742 aa9.29□□□□□ -0.92
COL6A3-208ENST00000468792 K7ELQ4 463 aaPredicted RBP9.29□□□□□ -0.92
COL6A3-208ENST00000468792 HIP1O00291 1037 aa9.29□□□□□ -0.92
COL6A3-208ENST00000468792 TOM1O60784 492 aa9.29□□□□□ -0.92
COL6A3-208ENST00000468792 STARD3NLO95772 234 aa9.29□□□□□ -0.92
COL6A3-208ENST00000468792 MCCP23508 829 aa9.29□□□□□ -0.92
COL6A3-208ENST00000468792 RFX5P48382 616 aaPredicted RBP9.29□□□□□ -0.92
COL6A3-208ENST00000468792 MCM2P49736 904 aa9.29□□□□□ -0.92
COL6A3-208ENST00000468792 BARGINQ6ZT62 677 aa9.29□□□□□ -0.92
COL6A3-208ENST00000468792 PIGBQ92521 554 aa9.29□□□□□ -0.92
COL6A3-208ENST00000468792 ISCA1Q9BUE6 129 aa9.29□□□□□ -0.92
COL6A3-208ENST00000468792 IL1RAPL2Q9NP60 686 aa9.29□□□□□ -0.92
COL6A3-208ENST00000468792 SNRKQ9NRH2 765 aa9.29□□□□□ -0.92
COL6A3-208ENST00000468792 CWC25Q9NXE8 425 aaPredicted RBP9.29□□□□□ -0.92
COL6A3-208ENST00000468792 NRAPQ86VF7 1730 aa9.28□□□□□ -0.92
COL6A3-208ENST00000468792 ST18O60284 1047 aa9.28□□□□□ -0.92
COL6A3-208ENST00000468792 SASH1O94885 1247 aa9.28□□□□□ -0.92
COL6A3-208ENST00000468792 IFIT2P09913 472 aaKnown RBP9.28□□□□□ -0.92
COL6A3-208ENST00000468792 OS9Q13438 667 aaPredicted RBP9.28□□□□□ -0.92
COL6A3-208ENST00000468792 EVI5LQ96CN4 794 aa9.28□□□□□ -0.92
COL6A3-208ENST00000468792 PLA2G12BQ9BX93 195 aa9.28□□□□□ -0.92
COL6A3-208ENST00000468792 GPR108Q9NPR9 543 aa9.28□□□□□ -0.92
COL6A3-208ENST00000468792 SPATA31A1Q5TZJ5 1347 aa9.28□□□□□ -0.92
COL6A3-208ENST00000468792 PHLPP1O60346 1717 aa9.28□□□□□ -0.92
COL6A3-208ENST00000468792 CICQ96RK0 1608 aaPredicted RBP9.27□□□□□ -0.92
COL6A3-208ENST00000468792 RFX7Q2KHR2 1363 aa9.27□□□□□ -0.93
COL6A3-208ENST00000468792 SLIT2O94813 1529 aa9.27□□□□□ -0.93
COL6A3-208ENST00000468792 ITGB4P16144 1822 aa9.27□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms