RNA–Protein interactions for RNA: ENST00000462482.1

SKA3-204, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 750 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-204ENST00000462482 TPTE2Q6XPS3 522 aa20.39■□□□□ 0.85
SKA3-204ENST00000462482 DNAJC5GQ8N7S2 189 aa20.39■□□□□ 0.85
SKA3-204ENST00000462482 RGL2O15211 777 aa20.38■□□□□ 0.85
SKA3-204ENST00000462482 SRGNP10124 158 aa20.38■□□□□ 0.85
SKA3-204ENST00000462482 PRELPP51888 382 aa20.38■□□□□ 0.85
SKA3-204ENST00000462482 PRPF40BQ6NWY9 871 aaKnown RBP20.38■□□□□ 0.85
SKA3-204ENST00000462482 NIP7Q9Y221 180 aaKnown RBP eCLIP20.38■□□□□ 0.85
SKA3-204ENST00000462482 AFDNP55196 1824 aaKnown RBP20.37■□□□□ 0.85
SKA3-204ENST00000462482 GTF2E1P29083 439 aaPredicted RBP20.37■□□□□ 0.85
SKA3-204ENST00000462482 SCN7AQ01118 1682 aa20.36■□□□□ 0.85
SKA3-204ENST00000462482 LTBP3Q9NS15 1303 aa20.36■□□□□ 0.85
SKA3-204ENST00000462482 KLRG1Q96E93 195 aa20.36■□□□□ 0.85
SKA3-204ENST00000462482 VIRMAQ69YN4 1812 aaKnown RBP20.36■□□□□ 0.85
SKA3-204ENST00000462482 MAPK8IP3Q9UPT6 1336 aa20.35■□□□□ 0.85
SKA3-204ENST00000462482 NPR1P16066 1061 aa20.35■□□□□ 0.85
SKA3-204ENST00000462482 SIPA1L3O60292 1781 aaPredicted RBP20.34■□□□□ 0.85
SKA3-204ENST00000462482 FAM177BA6PVY3 158 aa20.34■□□□□ 0.85
SKA3-204ENST00000462482 NBPF26B4DH59 902 aa20.34■□□□□ 0.85
SKA3-204ENST00000462482 HTRA3P83110 453 aa20.34■□□□□ 0.85
SKA3-204ENST00000462482 CCDC93Q567U6 631 aa20.34■□□□□ 0.85
SKA3-204ENST00000462482 NBPF10Q6P3W6 841 aaKnown RBP20.34■□□□□ 0.85
SKA3-204ENST00000462482 NBPF15Q8N660 670 aa20.34■□□□□ 0.85
SKA3-204ENST00000462482 MIS18AQ9NYP9 233 aa20.34■□□□□ 0.85
SKA3-204ENST00000462482 TNRC6CQ9HCJ0 1690 aaKnown RBP20.33■□□□□ 0.85
SKA3-204ENST00000462482 NFE2L2Q16236 605 aa20.32■□□□□ 0.84
SKA3-204ENST00000462482 KIF6Q6ZMV9 814 aa20.32■□□□□ 0.84
SKA3-204ENST00000462482 NGEFQ8N5V2 710 aa20.32■□□□□ 0.84
SKA3-204ENST00000462482 DLEC1Q9Y238 1755 aa20.31■□□□□ 0.84
SKA3-204ENST00000462482 NYXQ9GZU5 481 aa20.31■□□□□ 0.84
SKA3-204ENST00000462482 ALDH1B1P30837 517 aa20.3■□□□□ 0.84
SKA3-204ENST00000462482 RRP7AQ9Y3A4 280 aaKnown RBP20.3■□□□□ 0.84
SKA3-204ENST00000462482 KLRG2A4D1S0 409 aaPredicted RBP20.29■□□□□ 0.84
SKA3-204ENST00000462482 ERVV-1B6SEH8 477 aa20.29■□□□□ 0.84
SKA3-204ENST00000462482 RTKN2Q8IZC4 609 aa20.29■□□□□ 0.84
SKA3-204ENST00000462482 JMYQ8N9B5 988 aa20.29■□□□□ 0.84
SKA3-204ENST00000462482 IQCA1LA6NCM1 817 aa20.28■□□□□ 0.84
SKA3-204ENST00000462482 EIF4A1P60842 406 aaKnown RBP20.28■□□□□ 0.84
SKA3-204ENST00000462482 HLFQ16534 295 aa20.28■□□□□ 0.84
SKA3-204ENST00000462482 PLEKHF1Q96S99 279 aa20.28■□□□□ 0.84
SKA3-204ENST00000462482 DDNO94850 711 aaPredicted RBP20.27■□□□□ 0.84
SKA3-204ENST00000462482 FKBP4Q02790 459 aaKnown RBP eCLIP20.27■□□□□ 0.84
SKA3-204ENST00000462482 SBF1O95248 1867 aa20.26■□□□□ 0.83
SKA3-204ENST00000462482 POTECB2RU33 542 aa20.26■□□□□ 0.83
SKA3-204ENST00000462482 MYL6BP14649 208 aa20.26■□□□□ 0.83
SKA3-204ENST00000462482 CHADLQ6NUI6 762 aa20.26■□□□□ 0.83
SKA3-204ENST00000462482 C7orf43Q8WVR3 580 aa20.26■□□□□ 0.83
SKA3-204ENST00000462482 THUMPD2Q9BTF0 503 aaKnown RBP20.26■□□□□ 0.83
SKA3-204ENST00000462482 WDR90Q96KV7 1748 aa20.26■□□□□ 0.83
SKA3-204ENST00000462482 MAP3K15Q6ZN16 1313 aa20.26■□□□□ 0.83
SKA3-204ENST00000462482 ANKRD31Q8N7Z5 1873 aa20.25■□□□□ 0.83
SKA3-204ENST00000462482 TSPYL4Q9UJ04 414 aa20.25■□□□□ 0.83
SKA3-204ENST00000462482 BCORQ6W2J9 1755 aa20.24■□□□□ 0.83
SKA3-204ENST00000462482 RALBP1Q15311 655 aa20.24■□□□□ 0.83
SKA3-204ENST00000462482 RPGRQ92834 1020 aaKnown RBP20.24■□□□□ 0.83
SKA3-204ENST00000462482 ERBB4Q15303 1308 aa20.24■□□□□ 0.83
SKA3-204ENST00000462482 COL11A2P13942 1736 aaPredicted RBP20.23■□□□□ 0.83
SKA3-204ENST00000462482 LMOD3Q0VAK6 560 aa20.23■□□□□ 0.83
SKA3-204ENST00000462482 CC2D2BQ6DHV5 1058 aa20.23■□□□□ 0.83
SKA3-204ENST00000462482 TIAM2Q8IVF5 1701 aa20.23■□□□□ 0.83
SKA3-204ENST00000462482 ZBTB3Q9H5J0 574 aa20.23■□□□□ 0.83
SKA3-204ENST00000462482 ZNF277Q9NRM2 450 aaPredicted RBP20.23■□□□□ 0.83
SKA3-204ENST00000462482 GPTP24298 496 aa20.22■□□□□ 0.83
SKA3-204ENST00000462482 RIPK4P57078 832 aa20.22■□□□□ 0.83
SKA3-204ENST00000462482 TTLL7Q6ZT98 887 aa20.22■□□□□ 0.83
SKA3-204ENST00000462482 NUTM1Q86Y26 1132 aa20.22■□□□□ 0.83
SKA3-204ENST00000462482 JDP2Q8WYK2 163 aa20.21■□□□□ 0.83
SKA3-204ENST00000462482 L3MBTL3Q96JM7 780 aaPredicted RBP20.21■□□□□ 0.83
SKA3-204ENST00000462482 TMX4Q9H1E5 349 aaPredicted RBP20.21■□□□□ 0.83
SKA3-204ENST00000462482 IARSP41252 1262 aaKnown RBP20.2■□□□□ 0.82
SKA3-204ENST00000462482 GRIPAP1Q4V328 841 aa20.2■□□□□ 0.82
SKA3-204ENST00000462482 PPP1R42Q7Z4L9 355 aa20.2■□□□□ 0.82
SKA3-204ENST00000462482 LDHDQ86WU2 507 aa20.2■□□□□ 0.82
SKA3-204ENST00000462482 SYNE4Q8N205 404 aa20.2■□□□□ 0.82
SKA3-204ENST00000462482 RBM17Q96I25 401 aaKnown RBP20.2■□□□□ 0.82
SKA3-204ENST00000462482 EIF2S2P20042 333 aaKnown RBP20.19■□□□□ 0.82
SKA3-204ENST00000462482 CRY2Q49AN0 593 aa20.19■□□□□ 0.82
SKA3-204ENST00000462482 PARP10Q53GL7 1025 aa20.19■□□□□ 0.82
SKA3-204ENST00000462482 OLFM4Q6UX06 510 aa20.19■□□□□ 0.82
SKA3-204ENST00000462482 CREBZFQ9NS37 354 aa20.19■□□□□ 0.82
SKA3-204ENST00000462482 BABAM1Q9NWV8 329 aa20.19■□□□□ 0.82
SKA3-204ENST00000462482 HACL1Q9UJ83 578 aa20.19■□□□□ 0.82
SKA3-204ENST00000462482 IBTKQ9P2D0 1353 aaPredicted RBP20.19■□□□□ 0.82
SKA3-204ENST00000462482 EAPPQ56P03 285 aaPredicted RBP20.18■□□□□ 0.82
SKA3-204ENST00000462482 GIGYF2Q6Y7W6 1299 aaKnown RBP20.18■□□□□ 0.82
SKA3-204ENST00000462482 PSMD1Q99460 953 aa20.18■□□□□ 0.82
SKA3-204ENST00000462482 TAF1DQ9H5J8 278 aaPredicted RBP20.18■□□□□ 0.82
SKA3-204ENST00000462482 CLEC11AQ9Y240 323 aa20.18■□□□□ 0.82
SKA3-204ENST00000462482 SLX4Q8IY92 1834 aa20.18■□□□□ 0.82
SKA3-204ENST00000462482 SUSD4Q5VX71 490 aa20.17■□□□□ 0.82
SKA3-204ENST00000462482 ZNF34Q8IZ26 560 aa20.17■□□□□ 0.82
SKA3-204ENST00000462482 FER1L6Q2WGJ9 1857 aa20.17■□□□□ 0.82
SKA3-204ENST00000462482 ABCC12Q96J65 1359 aa20.17■□□□□ 0.82
SKA3-204ENST00000462482 POTEIP0CG38 1075 aa20.16■□□□□ 0.82
SKA3-204ENST00000462482 POTEJP0CG39 1038 aa20.16■□□□□ 0.82
SKA3-204ENST00000462482 HOXA10P31260 410 aaPredicted RBP20.16■□□□□ 0.82
SKA3-204ENST00000462482 EIF6P56537 245 aaKnown RBP20.16■□□□□ 0.82
SKA3-204ENST00000462482 PNMA8AQ86V59 439 aaPredicted RBP20.16■□□□□ 0.82
SKA3-204ENST00000462482 NLRP3Q96P20 1036 aa20.16■□□□□ 0.82
SKA3-204ENST00000462482 ZNF541Q9H0D2 1346 aa20.16■□□□□ 0.82
SKA3-204ENST00000462482 TMPOP42166 694 aaKnown RBP20.15■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 74.5 ms