RNA–Protein interactions for RNA: ENST00000461394.5

MSH2-204, Transcript of mutS homolog 2, humanhuman

TSL 3

Gene MSH2, Length 416 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2-204ENST00000461394 HEG1Q9ULI3 1381 aa8.44□□□□□ -1.06
MSH2-204ENST00000461394 ARFGEF2Q9Y6D5 1785 aa8.43□□□□□ -1.06
MSH2-204ENST00000461394 ALDH1L1O75891 902 aa8.43□□□□□ -1.06
MSH2-204ENST00000461394 PIP4K2AP48426 406 aaPredicted RBP8.43□□□□□ -1.06
MSH2-204ENST00000461394 MYT1Q01538 1121 aa8.43□□□□□ -1.06
MSH2-204ENST00000461394 BEND3Q5T5X7 828 aa8.43□□□□□ -1.06
MSH2-204ENST00000461394 COPS6Q7L5N1 327 aa8.43□□□□□ -1.06
MSH2-204ENST00000461394 RBM42Q9BTD8 480 aaKnown RBP8.43□□□□□ -1.06
MSH2-204ENST00000461394 RNF39Q9H2S5 420 aa8.43□□□□□ -1.06
MSH2-204ENST00000461394 ZNF330Q9Y3S2 320 aaPredicted RBP8.43□□□□□ -1.06
MSH2-204ENST00000461394 USP16Q9Y5T5 823 aa8.43□□□□□ -1.06
MSH2-204ENST00000461394 SMARCA5O60264 1052 aaPredicted RBP8.42□□□□□ -1.06
MSH2-204ENST00000461394 ATP8B2P98198 1209 aa8.42□□□□□ -1.06
MSH2-204ENST00000461394 C1QBPQ07021 282 aaKnown RBP8.42□□□□□ -1.06
MSH2-204ENST00000461394 OS9Q13438 667 aaPredicted RBP8.42□□□□□ -1.06
MSH2-204ENST00000461394 MEX3CQ5U5Q3 659 aaKnown RBP8.42□□□□□ -1.06
MSH2-204ENST00000461394 C8orf37Q96NL8 207 aa8.42□□□□□ -1.06
MSH2-204ENST00000461394 IPO9Q96P70 1041 aaKnown RBP8.42□□□□□ -1.06
MSH2-204ENST00000461394 MYD88Q99836 296 aa8.42□□□□□ -1.06
MSH2-204ENST00000461394 CDCA7Q9BWT1 371 aaPredicted RBP8.42□□□□□ -1.06
MSH2-204ENST00000461394 USP44Q9H0E7 712 aa8.42□□□□□ -1.06
MSH2-204ENST00000461394 EXOC6BQ9Y2D4 811 aa8.42□□□□□ -1.06
MSH2-204ENST00000461394 KCPQ6ZWJ8 1503 aa8.41□□□□□ -1.06
MSH2-204ENST00000461394 DISP2A7MBM2 1401 aa8.41□□□□□ -1.06
MSH2-204ENST00000461394 TNS2Q63HR2 1409 aa8.41□□□□□ -1.06
MSH2-204ENST00000461394 JCADQ9P266 1359 aa8.41□□□□□ -1.06
MSH2-204ENST00000461394 MFAP1P55081 439 aaKnown RBP8.41□□□□□ -1.06
MSH2-204ENST00000461394 DDB1Q16531 1140 aa8.41□□□□□ -1.06
MSH2-204ENST00000461394 CWF19L2Q2TBE0 894 aaKnown RBP8.41□□□□□ -1.06
MSH2-204ENST00000461394 NGLY1Q96IV0 654 aa8.41□□□□□ -1.06
MSH2-204ENST00000461394 THRAP3Q9Y2W1 955 aaKnown RBP8.41□□□□□ -1.06
MSH2-204ENST00000461394 LRP6O75581 1613 aa8.4□□□□□ -1.06
MSH2-204ENST00000461394 ERBB4Q15303 1308 aa8.4□□□□□ -1.06
MSH2-204ENST00000461394 SPATA31A1Q5TZJ5 1347 aa8.4□□□□□ -1.06
MSH2-204ENST00000461394 PNMA6EA0A0J9YXQ4 647 aa8.4□□□□□ -1.06
MSH2-204ENST00000461394 SRGAP3O43295 1099 aa8.4□□□□□ -1.06
MSH2-204ENST00000461394 SURF6O75683 361 aaKnown RBP8.4□□□□□ -1.06
MSH2-204ENST00000461394 NBPF7P0C2Y1 421 aaPredicted RBP8.4□□□□□ -1.06
MSH2-204ENST00000461394 PDIA6Q15084 440 aa8.4□□□□□ -1.06
MSH2-204ENST00000461394 DCAF8Q5TAQ9 597 aa8.4□□□□□ -1.06
MSH2-204ENST00000461394 ANKRD13DQ6ZTN6 518 aa8.4□□□□□ -1.06
MSH2-204ENST00000461394 PPP1R42Q7Z4L9 355 aa8.4□□□□□ -1.06
MSH2-204ENST00000461394 LINS1Q8NG48 757 aa8.4□□□□□ -1.06
MSH2-204ENST00000461394 METTL22Q9BUU2 404 aaPredicted RBP8.4□□□□□ -1.06
MSH2-204ENST00000461394 LRRCC1Q9C099 1032 aa8.4□□□□□ -1.06
MSH2-204ENST00000461394 WDR70Q9NW82 654 aa8.4□□□□□ -1.06
MSH2-204ENST00000461394 NOP58Q9Y2X3 529 aaKnown RBP8.4□□□□□ -1.06
MSH2-204ENST00000461394 GLI3P10071 1580 aa8.39□□□□□ -1.07
MSH2-204ENST00000461394 GRM8O00222 908 aa8.39□□□□□ -1.07
MSH2-204ENST00000461394 A1BGP04217 495 aa8.39□□□□□ -1.07
MSH2-204ENST00000461394 CASC1Q6TDU7 716 aa8.39□□□□□ -1.07
MSH2-204ENST00000461394 KIF6Q6ZMV9 814 aa8.39□□□□□ -1.07
MSH2-204ENST00000461394 DHX30Q7L2E3 1194 aaKnown RBP eCLIP8.39□□□□□ -1.07
MSH2-204ENST00000461394 C16orf71Q8IYS4 520 aaPredicted RBP8.39□□□□□ -1.07
MSH2-204ENST00000461394 CERKQ8TCT0 537 aa8.39□□□□□ -1.07
MSH2-204ENST00000461394 PIGBQ92521 554 aa8.39□□□□□ -1.07
MSH2-204ENST00000461394 TEX13AQ9BXU3 409 aaPredicted RBP8.39□□□□□ -1.07
MSH2-204ENST00000461394 ASAP1Q9ULH1 1129 aa8.39□□□□□ -1.07
MSH2-204ENST00000461394 NUP188Q5SRE5 1749 aa8.39□□□□□ -1.07
MSH2-204ENST00000461394 AK9Q5TCS8 1911 aa8.39□□□□□ -1.07
MSH2-204ENST00000461394 SPATA31A5Q5VU36 1347 aa8.38□□□□□ -1.07
MSH2-204ENST00000461394 SPATA31A7Q8IWB4 1347 aa8.38□□□□□ -1.07
MSH2-204ENST00000461394 RAB11FIP3O75154 756 aa8.38□□□□□ -1.07
MSH2-204ENST00000461394 STARD3NLO95772 234 aa8.38□□□□□ -1.07
MSH2-204ENST00000461394 HSP90AB4PQ58FF6 505 aa8.38□□□□□ -1.07
MSH2-204ENST00000461394 BMP2KLQ5H9B9 411 aa8.38□□□□□ -1.07
MSH2-204ENST00000461394 TTC22Q5TAA0 569 aa8.38□□□□□ -1.07
MSH2-204ENST00000461394 UNC5CLQ8IV45 518 aa8.38□□□□□ -1.07
MSH2-204ENST00000461394 PLEKHM2Q8IWE5 1019 aa8.38□□□□□ -1.07
MSH2-204ENST00000461394 DNAJC10Q8IXB1 793 aa8.38□□□□□ -1.07
MSH2-204ENST00000461394 PLBD2Q8NHP8 589 aa8.38□□□□□ -1.07
MSH2-204ENST00000461394 ACSBG1Q96GR2 724 aa8.38□□□□□ -1.07
MSH2-204ENST00000461394 ATG3Q9NT62 314 aa8.38□□□□□ -1.07
MSH2-204ENST00000461394 NEURL1BA8MQ27 555 aa8.37□□□□□ -1.07
MSH2-204ENST00000461394 ATP5J2-PTCD1G3V325 749 aa8.37□□□□□ -1.07
MSH2-204ENST00000461394 EIF5BO60841 1220 aaKnown RBP8.37□□□□□ -1.07
MSH2-204ENST00000461394 CDC45O75419 566 aa8.37□□□□□ -1.07
MSH2-204ENST00000461394 SEC24BO95487 1268 aa8.37□□□□□ -1.07
MSH2-204ENST00000461394 PRIM1P49642 420 aaKnown RBP8.37□□□□□ -1.07
MSH2-204ENST00000461394 FAM98CQ17RN3 349 aaKnown RBP8.37□□□□□ -1.07
MSH2-204ENST00000461394 SSH3Q8TE77 659 aa8.37□□□□□ -1.07
MSH2-204ENST00000461394 SUCLG2Q96I99 432 aa8.37□□□□□ -1.07
MSH2-204ENST00000461394 SGIP1Q9BQI5 828 aa8.37□□□□□ -1.07
MSH2-204ENST00000461394 ZBTB3Q9H5J0 574 aa8.37□□□□□ -1.07
MSH2-204ENST00000461394 CHMP3Q9Y3E7 222 aa8.37□□□□□ -1.07
MSH2-204ENST00000461394 SLIT2O94813 1529 aa8.37□□□□□ -1.07
MSH2-204ENST00000461394 TNKS1BP1Q9C0C2 1729 aaKnown RBP8.37□□□□□ -1.07
MSH2-204ENST00000461394 IBTKQ9P2D0 1353 aaPredicted RBP8.36□□□□□ -1.07
MSH2-204ENST00000461394 SPATA31A6Q5VVP1 1343 aa8.36□□□□□ -1.07
MSH2-204ENST00000461394 A0A087WZG4 1122 aa8.36□□□□□ -1.07
MSH2-204ENST00000461394 NBPF26B4DH59 902 aa8.36□□□□□ -1.07
MSH2-204ENST00000461394 IGKV5-2P06315 115 aa8.36□□□□□ -1.07
MSH2-204ENST00000461394 NUBP1P53384 320 aa8.36□□□□□ -1.07
MSH2-204ENST00000461394 G3BP1Q13283 466 aaKnown RBP eCLIP8.36□□□□□ -1.078e-7■■□□□ 13.3
MSH2-204ENST00000461394 GCKRQ14397 625 aa8.36□□□□□ -1.07
MSH2-204ENST00000461394 NBPF14Q5TI25 921 aa8.36□□□□□ -1.07
MSH2-204ENST00000461394 NBPF10Q6P3W6 841 aaKnown RBP8.36□□□□□ -1.07
MSH2-204ENST00000461394 TTLL7Q6ZT98 887 aa8.36□□□□□ -1.07
MSH2-204ENST00000461394 UBE3BQ7Z3V4 1068 aa8.36□□□□□ -1.07
MSH2-204ENST00000461394 NBPF15Q8N660 670 aa8.36□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms