RNA–Protein interactions for RNA: ENST00000460912.6

SYNE1-215, Transcript of spectrin repeat containing nuclear envelope protein 1, human

TSL 1 (best)

Gene SYNE1, Length 3,664 nt, Biotype processed transcript, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE1-215	ENST00000460912	GNAI2	P04899	355 aa		10.83	□□□□□ -0.68
SYNE1-215	ENST00000460912	DAXX	Q9UER7	740 aa	Predicted RBP	10.83	□□□□□ -0.68
SYNE1-215	ENST00000460912	SPEF2	Q9C093	1822 aa		10.83	□□□□□ -0.68
SYNE1-215	ENST00000460912	UNC5CL	Q8IV45	518 aa		10.82	□□□□□ -0.68
SYNE1-215	ENST00000460912	KAZALD1	Q96I82	304 aa		10.82	□□□□□ -0.68
SYNE1-215	ENST00000460912	ARX	Q96QS3	562 aa		10.82	□□□□□ -0.68
SYNE1-215	ENST00000460912	LGR6	Q9HBX8	967 aa		10.82	□□□□□ -0.68
SYNE1-215	ENST00000460912	DDX11L8	A8MPP1	907 aa		10.82	□□□□□ -0.68
SYNE1-215	ENST00000460912	ESYT1	Q9BSJ8	1104 aa		10.82	□□□□□ -0.68
SYNE1-215	ENST00000460912	CHML	P26374	656 aa		10.82	□□□□□ -0.68
SYNE1-215	ENST00000460912	PHAX	Q9H814	394 aa	Known RBP	10.82	□□□□□ -0.68
SYNE1-215	ENST00000460912	BTG4	Q9NY30	223 aa		10.82	□□□□□ -0.68
SYNE1-215	ENST00000460912	ARAP2	Q8WZ64	1704 aa		10.81	□□□□□ -0.68
SYNE1-215	ENST00000460912	PKP1	Q13835	747 aa		10.81	□□□□□ -0.68
SYNE1-215	ENST00000460912	RGS17	Q9UGC6	210 aa	Predicted RBP	10.81	□□□□□ -0.68
SYNE1-215	ENST00000460912	RRAGD	Q9NQL2	400 aa	Predicted RBP	10.81	□□□□□ -0.68
SYNE1-215	ENST00000460912	MYH3	P11055	1940 aa		10.81	□□□□□ -0.68
SYNE1-215	ENST00000460912	KCNQ3	O43525	872 aa		10.8	□□□□□ -0.68
SYNE1-215	ENST00000460912	ANAPC15	P60006	121 aa		10.8	□□□□□ -0.68
SYNE1-215	ENST00000460912	LMBRD1	Q9NUN5	540 aa		10.8	□□□□□ -0.68
SYNE1-215	ENST00000460912	PCDH11X	Q9BZA7	1347 aa		10.8	□□□□□ -0.68
SYNE1-215	ENST00000460912	PCDH11Y	Q9BZA8	1340 aa		10.8	□□□□□ -0.68
SYNE1-215	ENST00000460912	SSFA2	P28290	1259 aa		10.8	□□□□□ -0.68
SYNE1-215	ENST00000460912	PALD1	Q9ULE6	856 aa		10.8	□□□□□ -0.68
SYNE1-215	ENST00000460912	LRP5	O75197	1615 aa		10.8	□□□□□ -0.68
SYNE1-215	ENST00000460912	BAG4	O95429	457 aa	Known RBP	10.8	□□□□□ -0.68
SYNE1-215	ENST00000460912	GNAI3	P08754	354 aa		10.8	□□□□□ -0.68
SYNE1-215	ENST00000460912	TTC14	Q96N46	770 aa		10.8	□□□□□ -0.68
SYNE1-215	ENST00000460912	RPAP1	Q9BWH6	1393 aa	Predicted RBP	10.8	□□□□□ -0.68
SYNE1-215	ENST00000460912	PANK2	Q9BZ23	570 aa		10.79	□□□□□ -0.68
SYNE1-215	ENST00000460912	KIAA1551	Q9HCM1	1747 aa		10.79	□□□□□ -0.68
SYNE1-215	ENST00000460912	ERC2	O15083	957 aa		10.79	□□□□□ -0.68
SYNE1-215	ENST00000460912	ZNF445	P59923	1031 aa		10.79	□□□□□ -0.68
SYNE1-215	ENST00000460912	PRDM11	Q9NQV5	511 aa		10.79	□□□□□ -0.68
SYNE1-215	ENST00000460912	TNFRSF11A	Q9Y6Q6	616 aa	Predicted RBP	10.79	□□□□□ -0.68
SYNE1-215	ENST00000460912	LRRFIP2	Q9Y608	721 aa	Known RBP	10.79	□□□□□ -0.68
SYNE1-215	ENST00000460912	IL2RB	P14784	551 aa		10.78	□□□□□ -0.68
SYNE1-215	ENST00000460912	MX1	P20591	662 aa		10.78	□□□□□ -0.68
SYNE1-215	ENST00000460912	LRRCC1	Q9C099	1032 aa		10.78	□□□□□ -0.68
SYNE1-215	ENST00000460912	GIGYF1	O75420	1035 aa	Predicted RBP	10.78	□□□□□ -0.68
SYNE1-215	ENST00000460912	HSPA4	P34932	840 aa		10.78	□□□□□ -0.68
SYNE1-215	ENST00000460912	KLHL40	Q2TBA0	621 aa		10.78	□□□□□ -0.68
SYNE1-215	ENST00000460912	GLIPR1L2	Q4G1C9	344 aa		10.78	□□□□□ -0.68
SYNE1-215	ENST00000460912	SRCIN1	Q9C0H9	1055 aa		10.78	□□□□□ -0.68
SYNE1-215	ENST00000460912	SLC52A2	Q9HAB3	445 aa		10.78	□□□□□ -0.68
SYNE1-215	ENST00000460912	ZNF646	O15015	1829 aa	Predicted RBP	10.78	□□□□□ -0.68
SYNE1-215	ENST00000460912	KIF13B	Q9NQT8	1826 aa		10.78	□□□□□ -0.68
SYNE1-215	ENST00000460912	SOX12	O15370	315 aa		10.78	□□□□□ -0.68
SYNE1-215	ENST00000460912	NBPF7	P0C2Y1	421 aa	Predicted RBP	10.78	□□□□□ -0.68
SYNE1-215	ENST00000460912	PLEKHO1	Q53GL0	409 aa	Predicted RBP	10.78	□□□□□ -0.68
SYNE1-215	ENST00000460912	RTF1	Q92541	710 aa	Known RBP	10.78	□□□□□ -0.68
SYNE1-215	ENST00000460912	ERVV-2	B6SEH9	535 aa		10.77	□□□□□ -0.68
SYNE1-215	ENST00000460912	PPP1R9B	Q96SB3	815 aa		10.77	□□□□□ -0.68
SYNE1-215	ENST00000460912	CDCA7	Q9BWT1	371 aa	Predicted RBP	10.77	□□□□□ -0.68
SYNE1-215	ENST00000460912	ECM29	Q5VYK3	1845 aa		10.77	□□□□□ -0.69
SYNE1-215	ENST00000460912	RAB11FIP3	O75154	756 aa		10.77	□□□□□ -0.69
SYNE1-215	ENST00000460912	HMMR	O75330	724 aa		10.77	□□□□□ -0.69
SYNE1-215	ENST00000460912	PIP4K2B	P78356	416 aa		10.77	□□□□□ -0.69
SYNE1-215	ENST00000460912	L1TD1	Q5T7N2	865 aa	Known RBP	10.77	□□□□□ -0.69
SYNE1-215	ENST00000460912	SPRYD3	Q8NCJ5	442 aa		10.77	□□□□□ -0.69
SYNE1-215	ENST00000460912	FBXO41	Q8TF61	875 aa		10.77	□□□□□ -0.69
SYNE1-215	ENST00000460912	LSG1	Q9H089	658 aa	Known RBP	10.77	□□□□□ -0.69
SYNE1-215	ENST00000460912	CWC22	Q9HCG8	908 aa	Known RBP	10.77	□□□□□ -0.69
SYNE1-215	ENST00000460912	EXOC6B	Q9Y2D4	811 aa		10.77	□□□□□ -0.69
SYNE1-215	ENST00000460912	MYH7	P12883	1935 aa		10.77	□□□□□ -0.69
SYNE1-215	ENST00000460912	ERBB4	Q15303	1308 aa		10.77	□□□□□ -0.69
SYNE1-215	ENST00000460912	DLEC1	Q9Y238	1755 aa		10.77	□□□□□ -0.69
SYNE1-215	ENST00000460912	ZGPAT	Q8N5A5	531 aa	Known RBP	10.77	□□□□□ -0.69
SYNE1-215	ENST00000460912	DCAF5	Q96JK2	942 aa		10.77	□□□□□ -0.69
SYNE1-215	ENST00000460912	BRD1	O95696	1058 aa		10.76	□□□□□ -0.69
SYNE1-215	ENST00000460912	INTS4	Q96HW7	963 aa	Known RBP	10.76	□□□□□ -0.69
SYNE1-215	ENST00000460912	GPT2	Q8TD30	523 aa		10.76	□□□□□ -0.69
SYNE1-215	ENST00000460912	CHPF2	Q9P2E5	772 aa		10.76	□□□□□ -0.69
SYNE1-215	ENST00000460912	MRE11	P49959	708 aa		10.76	□□□□□ -0.69
SYNE1-215	ENST00000460912	MARCH10	Q8NA82	808 aa	Predicted RBP	10.76	□□□□□ -0.69
SYNE1-215	ENST00000460912	PROSER3	Q2NL68	480 aa		10.75	□□□□□ -0.69
SYNE1-215	ENST00000460912	RAD50	Q92878	1312 aa		10.75	□□□□□ -0.69
SYNE1-215	ENST00000460912	PTMS	P20962	102 aa		10.75	□□□□□ -0.69
SYNE1-215	ENST00000460912	SKOR2	Q2VWA4	1001 aa	Predicted RBP	10.75	□□□□□ -0.69
SYNE1-215	ENST00000460912	TSHZ3	Q63HK5	1081 aa		10.75	□□□□□ -0.69
SYNE1-215	ENST00000460912	GRPEL1	Q9HAV7	217 aa		10.75	□□□□□ -0.69
SYNE1-215	ENST00000460912	DOCK2	Q92608	1830 aa		10.75	□□□□□ -0.69
SYNE1-215	ENST00000460912	UBE2Q2	Q8WVN8	375 aa		10.74	□□□□□ -0.69
SYNE1-215	ENST00000460912	LRRC37A	A6NMS7	1700 aa		10.74	□□□□□ -0.69
SYNE1-215	ENST00000460912	SGSM2	O43147	1006 aa		10.74	□□□□□ -0.69
SYNE1-215	ENST00000460912	REC8	O95072	547 aa		10.74	□□□□□ -0.69
SYNE1-215	ENST00000460912	ST3GAL1	Q11201	340 aa		10.74	□□□□□ -0.69
SYNE1-215	ENST00000460912	IFNL2	Q8IZJ0	200 aa		10.74	□□□□□ -0.69
SYNE1-215	ENST00000460912	TMEM87A	Q8NBN3	555 aa		10.74	□□□□□ -0.69
SYNE1-215	ENST00000460912	ZCRB1	Q8TBF4	217 aa	Known RBP	10.74	□□□□□ -0.69
SYNE1-215	ENST00000460912	PDLIM2	Q96JY6	352 aa		10.74	□□□□□ -0.69
SYNE1-215	ENST00000460912	SPG7	Q9UQ90	795 aa		10.74	□□□□□ -0.69
SYNE1-215	ENST00000460912	PPP1R42	Q7Z4L9	355 aa		10.74	□□□□□ -0.69
SYNE1-215	ENST00000460912	LTV1	Q96GA3	475 aa	Predicted RBP	10.74	□□□□□ -0.69
SYNE1-215	ENST00000460912	LTBP1	Q14766	1721 aa		10.74	□□□□□ -0.69
SYNE1-215	ENST00000460912	AKAP11	Q9UKA4	1901 aa		10.74	□□□□□ -0.69
SYNE1-215	ENST00000460912	MED23	Q9ULK4	1368 aa		10.74	□□□□□ -0.69
SYNE1-215	ENST00000460912	TAT	P17735	454 aa	Predicted RBP	10.73	□□□□□ -0.69
SYNE1-215	ENST00000460912	CASP7	P55210	303 aa		10.73	□□□□□ -0.69
SYNE1-215	ENST00000460912	SLC4A9	Q96Q91	983 aa		10.73	□□□□□ -0.69

Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms