RNA–Protein interactions for RNA: ENST00000446349.5

PTPN3-204, Transcript of protein tyrosine phosphatase, non-receptor type 3, humanhuman

TSL 1 (best) BASIC

Gene PTPN3, Length 8,630 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN3-204ENST00000446349 SPATA32Q96LK8 384 aa9.94□□□□□ -0.82
PTPN3-204ENST00000446349 RTCBQ9Y3I0 505 aaKnown RBP9.94□□□□□ -0.82
PTPN3-204ENST00000446349 CFAP65Q6ZU64 1925 aaKnown RBP9.94□□□□□ -0.82
PTPN3-204ENST00000446349 FKBP15Q5T1M5 1219 aa9.94□□□□□ -0.82
PTPN3-204ENST00000446349 TPTE2Q6XPS3 522 aa9.94□□□□□ -0.82
PTPN3-204ENST00000446349 LDHAL6AQ6ZMR3 332 aa9.94□□□□□ -0.82
PTPN3-204ENST00000446349 DRC1Q96MC2 740 aa9.94□□□□□ -0.82
PTPN3-204ENST00000446349 BABAM1Q9NWV8 329 aa9.94□□□□□ -0.82
PTPN3-204ENST00000446349 PARP3Q9Y6F1 533 aa9.94□□□□□ -0.82
PTPN3-204ENST00000446349 FBXO31Q5XUX0 539 aaPredicted RBP9.94□□□□□ -0.82
PTPN3-204ENST00000446349 FERMT2Q96AC1 680 aa9.94□□□□□ -0.82
PTPN3-204ENST00000446349 SCAND2PQ9GZW5 306 aaPredicted RBP9.94□□□□□ -0.82
PTPN3-204ENST00000446349 SSRP1Q08945 709 aaKnown RBP9.94□□□□□ -0.82
PTPN3-204ENST00000446349 GNAT2P19087 354 aa9.94□□□□□ -0.82
PTPN3-204ENST00000446349 CWC27Q6UX04 472 aaKnown RBP9.94□□□□□ -0.82
PTPN3-204ENST00000446349 NEO1Q92859 1461 aa9.94□□□□□ -0.82
PTPN3-204ENST00000446349 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP9.94□□□□□ -0.82
PTPN3-204ENST00000446349 MINDY4BA8MYZ0 360 aa9.94□□□□□ -0.82
PTPN3-204ENST00000446349 NME9Q86XW9 330 aa9.94□□□□□ -0.82
PTPN3-204ENST00000446349 LRRC45Q96CN5 670 aa9.94□□□□□ -0.82
PTPN3-204ENST00000446349 TBX22Q9Y458 520 aa9.94□□□□□ -0.82
PTPN3-204ENST00000446349 ABCA5Q8WWZ7 1642 aa9.94□□□□□ -0.82
PTPN3-204ENST00000446349 ABCC1P33527 1531 aa9.94□□□□□ -0.82
PTPN3-204ENST00000446349 ARHGAP45Q92619 1136 aa9.94□□□□□ -0.82
PTPN3-204ENST00000446349 MAP7D2Q96T17 732 aa9.94□□□□□ -0.82
PTPN3-204ENST00000446349 KRT23Q9C075 422 aa9.94□□□□□ -0.82
PTPN3-204ENST00000446349 ZNF622Q969S3 477 aaKnown RBP eCLIP9.93□□□□□ -0.82
PTPN3-204ENST00000446349 FLT4P35916 1363 aa9.93□□□□□ -0.82
PTPN3-204ENST00000446349 ALDH1L1O75891 902 aa9.93□□□□□ -0.82
PTPN3-204ENST00000446349 SSBP05455 408 aaKnown RBP eCLIP9.93□□□□□ -0.82
PTPN3-204ENST00000446349 LMOD1P29536 600 aaPredicted RBP9.93□□□□□ -0.82
PTPN3-204ENST00000446349 CALML4Q96GE6 196 aa9.93□□□□□ -0.82
PTPN3-204ENST00000446349 APBB1IPQ7Z5R6 666 aaPredicted RBP9.93□□□□□ -0.82
PTPN3-204ENST00000446349 RTN4Q9NQC3 1192 aaKnown RBP9.93□□□□□ -0.82
PTPN3-204ENST00000446349 CWC15Q9P013 229 aaKnown RBP9.93□□□□□ -0.82
PTPN3-204ENST00000446349 PCDH11XQ9BZA7 1347 aa9.93□□□□□ -0.82
PTPN3-204ENST00000446349 PCDH11YQ9BZA8 1340 aa9.93□□□□□ -0.82
PTPN3-204ENST00000446349 CCDC194A0A1B0GVG4 234 aa9.93□□□□□ -0.82
PTPN3-204ENST00000446349 KIF2AO00139 706 aaPredicted RBP9.93□□□□□ -0.82
PTPN3-204ENST00000446349 BCAR3O75815 825 aa9.93□□□□□ -0.82
PTPN3-204ENST00000446349 ERMNQ8TAM6 284 aa9.93□□□□□ -0.82
PTPN3-204ENST00000446349 JDP2Q8WYK2 163 aa9.93□□□□□ -0.82
PTPN3-204ENST00000446349 TCP11L1Q9NUJ3 509 aa9.93□□□□□ -0.82
PTPN3-204ENST00000446349 FLIIQ13045 1269 aa9.93□□□□□ -0.82
PTPN3-204ENST00000446349 C1orf115Q9H7X2 142 aa9.93□□□□□ -0.82
PTPN3-204ENST00000446349 CCDC191Q8NCU4 936 aa9.93□□□□□ -0.82
PTPN3-204ENST00000446349 CCDC172P0C7W6 258 aa9.92□□□□□ -0.82
PTPN3-204ENST00000446349 ADGRF5Q8IZF2 1346 aa9.92□□□□□ -0.82
PTPN3-204ENST00000446349 FAM114A1Q8IWE2 563 aa9.92□□□□□ -0.82
PTPN3-204ENST00000446349 KAT14Q9H8E8 782 aa9.92□□□□□ -0.82
PTPN3-204ENST00000446349 ANKRD13DQ6ZTN6 518 aa9.92□□□□□ -0.82
PTPN3-204ENST00000446349 SH2D4AQ9H788 454 aa9.92□□□□□ -0.82
PTPN3-204ENST00000446349 ERLIN1O75477 346 aa9.92□□□□□ -0.82
PTPN3-204ENST00000446349 NEFHP12036 1026 aa9.92□□□□□ -0.82
PTPN3-204ENST00000446349 TSHZ2Q9NRE2 1034 aa9.92□□□□□ -0.82
PTPN3-204ENST00000446349 ARHGEF12Q9NZN5 1544 aa9.92□□□□□ -0.82
PTPN3-204ENST00000446349 ATP6V1AP38606 617 aa9.92□□□□□ -0.82
PTPN3-204ENST00000446349 CEBPAP49715 358 aaPredicted RBP9.92□□□□□ -0.82
PTPN3-204ENST00000446349 MCM10Q7L590 875 aa9.92□□□□□ -0.82
PTPN3-204ENST00000446349 NBPF7P0C2Y1 421 aaPredicted RBP9.92□□□□□ -0.82
PTPN3-204ENST00000446349 NCBP1Q09161 790 aaKnown RBP9.92□□□□□ -0.82
PTPN3-204ENST00000446349 CCDC148Q8NFR7 591 aa9.92□□□□□ -0.82
PTPN3-204ENST00000446349 FIBPO43427 364 aa9.91□□□□□ -0.82
PTPN3-204ENST00000446349 MCM3P25205 808 aa9.91□□□□□ -0.82
PTPN3-204ENST00000446349 C8orf76Q96K31 380 aa9.91□□□□□ -0.82
PTPN3-204ENST00000446349 CAVIN2O95810 425 aa9.91□□□□□ -0.82
PTPN3-204ENST00000446349 TAF4BQ92750 862 aa9.91□□□□□ -0.82
PTPN3-204ENST00000446349 MAST1Q9Y2H9 1570 aa9.91□□□□□ -0.82
PTPN3-204ENST00000446349 ECHDC1Q9NTX5 307 aa9.91□□□□□ -0.82
PTPN3-204ENST00000446349 RANBP6O60518 1105 aaKnown RBP9.91□□□□□ -0.82
PTPN3-204ENST00000446349 PDE6BP35913 854 aa9.91□□□□□ -0.82
PTPN3-204ENST00000446349 IFIT3O14879 490 aaKnown RBP9.91□□□□□ -0.82
PTPN3-204ENST00000446349 EPB41L2O43491 1005 aaKnown RBP9.91□□□□□ -0.82
PTPN3-204ENST00000446349 CASTP20810 708 aaKnown RBP9.91□□□□□ -0.82
PTPN3-204ENST00000446349 TMEM57Q8N5G2 664 aa9.91□□□□□ -0.82
PTPN3-204ENST00000446349 DDX12PQ92771 950 aa9.91□□□□□ -0.82
PTPN3-204ENST00000446349 UTP14AQ9BVJ6 771 aaKnown RBP9.91□□□□□ -0.82
PTPN3-204ENST00000446349 MAP3K2Q9Y2U5 619 aa9.91□□□□□ -0.82
PTPN3-204ENST00000446349 ZMYM3Q14202 1370 aa9.91□□□□□ -0.82
PTPN3-204ENST00000446349 MFSD6Q6ZSS7 791 aa9.91□□□□□ -0.82
PTPN3-204ENST00000446349 NUP62CLQ9H1M0 184 aa9.91□□□□□ -0.82
PTPN3-204ENST00000446349 SPDYE4A6NLX3 237 aa9.9□□□□□ -0.82
PTPN3-204ENST00000446349 EIF5P55010 431 aaKnown RBP9.9□□□□□ -0.82
PTPN3-204ENST00000446349 BRPF1P55201 1214 aaPredicted RBP9.9□□□□□ -0.82
PTPN3-204ENST00000446349 SUPT20HQ8NEM7 779 aa9.9□□□□□ -0.82
PTPN3-204ENST00000446349 FLAD1Q8NFF5 587 aa9.9□□□□□ -0.82
PTPN3-204ENST00000446349 DCAF5Q96JK2 942 aa9.9□□□□□ -0.82
PTPN3-204ENST00000446349 MAST3O60307 1309 aa9.9□□□□□ -0.82
PTPN3-204ENST00000446349 WDR78Q5VTH9 848 aa9.9□□□□□ -0.82
PTPN3-204ENST00000446349 STK32BQ9NY57 414 aa9.9□□□□□ -0.82
PTPN3-204ENST00000446349 EIF3JO75822 258 aaKnown RBP9.9□□□□□ -0.82
PTPN3-204ENST00000446349 GOLGA6L7A0A1B0GV03 622 aa9.9□□□□□ -0.82
PTPN3-204ENST00000446349 CALM1P0DP23 149 aa9.9□□□□□ -0.82
PTPN3-204ENST00000446349 CALM2P0DP24 149 aa9.9□□□□□ -0.82
PTPN3-204ENST00000446349 CALM3P0DP25 149 aa9.9□□□□□ -0.82
PTPN3-204ENST00000446349 IL15P40933 162 aaPredicted RBP9.9□□□□□ -0.83
PTPN3-204ENST00000446349 NLRP5P59047 1200 aa9.9□□□□□ -0.83
PTPN3-204ENST00000446349 NAP1L4Q99733 375 aaKnown RBP9.9□□□□□ -0.83
PTPN3-204ENST00000446349 ZC3H12CQ9C0D7 883 aaKnown RBP9.9□□□□□ -0.83
PTPN3-204ENST00000446349 TRAK2O60296 914 aa9.9□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms