RNA–Protein interactions for RNA: ENST00000439561.6

COPB1-202, Transcript of coatomer protein complex subunit beta 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COPB1, Length 3,382 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPB1-202ENST00000439561 NLRP6P59044 892 aa10.71□□□□□ -0.7
COPB1-202ENST00000439561 PTH1RQ03431 593 aa10.71□□□□□ -0.7
COPB1-202ENST00000439561 SH2B1Q9NRF2 756 aaPredicted RBP10.71□□□□□ -0.7
COPB1-202ENST00000439561 PPP6R1Q9UPN7 881 aa10.71□□□□□ -0.7
COPB1-202ENST00000439561 ADGRB3O60242 1522 aa10.7□□□□□ -0.7
COPB1-202ENST00000439561 PI4KAP2A4QPH2 592 aa10.7□□□□□ -0.7
COPB1-202ENST00000439561 AP5Z1O43299 807 aa10.7□□□□□ -0.7
COPB1-202ENST00000439561 SMC2O95347 1197 aa10.7□□□□□ -0.7
COPB1-202ENST00000439561 G3BP1Q13283 466 aaKnown RBP eCLIP10.7□□□□□ -0.73e-7■■■■□ 25.6
COPB1-202ENST00000439561 PI4KAP1Q8N8J0 262 aa10.7□□□□□ -0.7
COPB1-202ENST00000439561 SDF4Q9BRK5 362 aa10.7□□□□□ -0.7
COPB1-202ENST00000439561 RBM8AQ9Y5S9 174 aaKnown RBP10.7□□□□□ -0.7
COPB1-202ENST00000439561 A0A087WWV3 80 aa10.7□□□□□ -0.7
COPB1-202ENST00000439561 KIF20AO95235 890 aa10.7□□□□□ -0.7
COPB1-202ENST00000439561 GUCY1B3Q02153 619 aa10.7□□□□□ -0.7
COPB1-202ENST00000439561 TEFQ10587 303 aa10.7□□□□□ -0.7
COPB1-202ENST00000439561 ME3Q16798 604 aa10.7□□□□□ -0.7
COPB1-202ENST00000439561 UTP14CQ5TAP6 766 aaKnown RBP10.7□□□□□ -0.7
COPB1-202ENST00000439561 LRRC2Q9BYS8 371 aa10.7□□□□□ -0.7
COPB1-202ENST00000439561 NBPF7P0C2Y1 421 aaPredicted RBP10.69□□□□□ -0.7
COPB1-202ENST00000439561 SCAND2PQ9GZW5 306 aaPredicted RBP10.69□□□□□ -0.7
COPB1-202ENST00000439561 USP44Q9H0E7 712 aa10.69□□□□□ -0.7
COPB1-202ENST00000439561 SETBP1Q9Y6X0 1596 aa10.69□□□□□ -0.7
COPB1-202ENST00000439561 PPRC1Q5VV67 1664 aaKnown RBP10.69□□□□□ -0.7
COPB1-202ENST00000439561 NRXN1Q9ULB1 1477 aa10.69□□□□□ -0.7
COPB1-202ENST00000439561 MAP3K19Q56UN5 1328 aa10.69□□□□□ -0.7
COPB1-202ENST00000439561 GNAT3A8MTJ3 354 aa10.69□□□□□ -0.7
COPB1-202ENST00000439561 KINO60870 393 aaKnown RBP10.69□□□□□ -0.7
COPB1-202ENST00000439561 FAM177A1Q8N128 213 aaPredicted RBP10.69□□□□□ -0.7
COPB1-202ENST00000439561 ERCC4Q92889 916 aaPredicted RBP10.69□□□□□ -0.7
COPB1-202ENST00000439561 ZBTB9Q96C00 473 aa10.69□□□□□ -0.7
COPB1-202ENST00000439561 RPAP1Q9BWH6 1393 aaPredicted RBP10.69□□□□□ -0.7
COPB1-202ENST00000439561 ACEP12821 1306 aa10.69□□□□□ -0.7
COPB1-202ENST00000439561 SMTNL1A8MU46 457 aa10.69□□□□□ -0.7
COPB1-202ENST00000439561 SKILP12757 684 aa10.69□□□□□ -0.7
COPB1-202ENST00000439561 GNL2Q13823 731 aaKnown RBP10.69□□□□□ -0.7
COPB1-202ENST00000439561 LARP1Q6PKG0 1096 aaKnown RBP10.69□□□□□ -0.7
COPB1-202ENST00000439561 CCAR2Q8N163 923 aaKnown RBP10.69□□□□□ -0.7
COPB1-202ENST00000439561 OGFRQ9NZT2 677 aa10.69□□□□□ -0.7
COPB1-202ENST00000439561 ME1P48163 572 aa10.68□□□□□ -0.7
COPB1-202ENST00000439561 ZSCAN25Q6NSZ9 544 aa10.68□□□□□ -0.7
COPB1-202ENST00000439561 SPTLC3Q9NUV7 552 aa10.68□□□□□ -0.7
COPB1-202ENST00000439561 HYPKQ9NX55 129 aa10.68□□□□□ -0.7
COPB1-202ENST00000439561 USP16Q9Y5T5 823 aa10.68□□□□□ -0.7
COPB1-202ENST00000439561 FAM227BQ96M60 508 aa10.68□□□□□ -0.7
COPB1-202ENST00000439561 ECHDC1Q9NTX5 307 aa10.68□□□□□ -0.7
COPB1-202ENST00000439561 DDX19AQ9NUU7 478 aaKnown RBP10.68□□□□□ -0.7
COPB1-202ENST00000439561 MRVI1Q9Y6F6 885 aa10.68□□□□□ -0.7
COPB1-202ENST00000439561 ABCC3O15438 1527 aa10.68□□□□□ -0.7
COPB1-202ENST00000439561 TTC21BQ7Z4L5 1316 aa10.68□□□□□ -0.7
COPB1-202ENST00000439561 VGLL3A8MV65 326 aa10.68□□□□□ -0.7
COPB1-202ENST00000439561 ZNF75DP51815 510 aa10.68□□□□□ -0.7
COPB1-202ENST00000439561 NCBP1Q09161 790 aaKnown RBP10.68□□□□□ -0.7
COPB1-202ENST00000439561 DNAJC2Q99543 621 aaKnown RBP10.68□□□□□ -0.7
COPB1-202ENST00000439561 LSG1Q9H089 658 aaKnown RBP10.68□□□□□ -0.7
COPB1-202ENST00000439561 NR1I2O75469 434 aa10.67□□□□□ -0.7
COPB1-202ENST00000439561 ARID5BQ14865 1188 aa10.67□□□□□ -0.7
COPB1-202ENST00000439561 FEZ1Q99689 392 aa10.67□□□□□ -0.7
COPB1-202ENST00000439561 TPCN1Q9ULQ1 816 aa10.67□□□□□ -0.7
COPB1-202ENST00000439561 ARHGEF40Q8TER5 1519 aa10.67□□□□□ -0.7
COPB1-202ENST00000439561 CCDC66A2RUB6 948 aa10.67□□□□□ -0.7
COPB1-202ENST00000439561 ELF2Q15723 593 aa10.67□□□□□ -0.7
COPB1-202ENST00000439561 VPS53Q5VIR6 699 aa10.67□□□□□ -0.7
COPB1-202ENST00000439561 CREB3L3Q68CJ9 461 aa10.67□□□□□ -0.7
COPB1-202ENST00000439561 PAXBP1Q9Y5B6 917 aa10.67□□□□□ -0.7
COPB1-202ENST00000439561 KRT222Q8N1A0 295 aa10.66□□□□□ -0.7
COPB1-202ENST00000439561 KIF18AQ8NI77 898 aa10.66□□□□□ -0.7
COPB1-202ENST00000439561 CACTINQ8WUQ7 758 aaKnown RBP10.66□□□□□ -0.7
COPB1-202ENST00000439561 DNAAF4Q8WXU2 420 aa10.66□□□□□ -0.7
COPB1-202ENST00000439561 SLC26A8Q96RN1 970 aa10.66□□□□□ -0.7
COPB1-202ENST00000439561 EYA1Q99502 592 aa10.66□□□□□ -0.7
COPB1-202ENST00000439561 CHPF2Q9P2E5 772 aa10.66□□□□□ -0.7
COPB1-202ENST00000439561 STAP2Q9UGK3 403 aa10.66□□□□□ -0.7
COPB1-202ENST00000439561 EDC4Q6P2E9 1401 aaKnown RBP10.66□□□□□ -0.7
COPB1-202ENST00000439561 KIAA0232Q92628 1395 aa10.66□□□□□ -0.7
COPB1-202ENST00000439561 POLR3GO15318 223 aaPredicted RBP10.66□□□□□ -0.7
COPB1-202ENST00000439561 HDGFP51858 240 aaKnown RBP10.66□□□□□ -0.7
COPB1-202ENST00000439561 NMIQ13287 307 aaPredicted RBP10.66□□□□□ -0.7
COPB1-202ENST00000439561 TMEM87AQ8NBN3 555 aa10.66□□□□□ -0.7
COPB1-202ENST00000439561 ZNF215Q9UL58 517 aaPredicted RBP10.66□□□□□ -0.7
COPB1-202ENST00000439561 BIN1O00499 593 aa10.66□□□□□ -0.7
COPB1-202ENST00000439561 ZBTB22O15209 634 aa10.66□□□□□ -0.7
COPB1-202ENST00000439561 JAK2O60674 1132 aa10.66□□□□□ -0.7
COPB1-202ENST00000439561 GTF2F1P35269 517 aaKnown RBP eCLIP10.66□□□□□ -0.73e-9■■■■■ 105.7
COPB1-202ENST00000439561 ISM2Q6H9L7 571 aa10.66□□□□□ -0.7
COPB1-202ENST00000439561 MNS1Q8NEH6 495 aa10.66□□□□□ -0.7
COPB1-202ENST00000439561 BRF1Q92994 677 aa10.66□□□□□ -0.7
COPB1-202ENST00000439561 CAMSAP1Q5T5Y3 1602 aa10.66□□□□□ -0.7
COPB1-202ENST00000439561 NPHP3Q7Z494 1330 aa10.65□□□□□ -0.7
COPB1-202ENST00000439561 CCDC69A6NI79 296 aa10.65□□□□□ -0.7
COPB1-202ENST00000439561 TNNT3P45378 269 aaPredicted RBP10.65□□□□□ -0.7
COPB1-202ENST00000439561 CCT2P78371 535 aaKnown RBP10.65□□□□□ -0.7
COPB1-202ENST00000439561 ANKRD1Q15327 319 aa10.65□□□□□ -0.7
COPB1-202ENST00000439561 GTF3C6Q969F1 213 aa10.65□□□□□ -0.7
COPB1-202ENST00000439561 TMX1Q9H3N1 280 aa10.65□□□□□ -0.7
COPB1-202ENST00000439561 CHD1O14646 1710 aa10.65□□□□□ -0.7
COPB1-202ENST00000439561 LEO1Q8WVC0 666 aaPredicted RBP10.65□□□□□ -0.7
COPB1-202ENST00000439561 SSH2Q76I76 1423 aa10.65□□□□□ -0.7
COPB1-202ENST00000439561 CCAR1Q8IX12 1150 aaKnown RBP10.65□□□□□ -0.71
COPB1-202ENST00000439561 TTC14Q96N46 770 aa10.65□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 79 ms