RNA–Protein interactions for RNA: ENST00000416649.6

NCKIPSD-204, Transcript of NCK interacting protein with SH3 domain, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene NCKIPSD, Length 2,925 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NCKIPSD-204ENST00000416649 CEP135Q66GS9 1140 aa17.5■□□□□ 0.39
NCKIPSD-204ENST00000416649 MCM10Q7L590 875 aa17.5■□□□□ 0.39
NCKIPSD-204ENST00000416649 ORAI2Q96SN7 254 aa17.5■□□□□ 0.39
NCKIPSD-204ENST00000416649 TMEM87AQ8NBN3 555 aa17.5■□□□□ 0.39
NCKIPSD-204ENST00000416649 PAXBP1Q9Y5B6 917 aa17.5■□□□□ 0.39
NCKIPSD-204ENST00000416649 RPAP1Q9BWH6 1393 aaPredicted RBP17.49■□□□□ 0.39
NCKIPSD-204ENST00000416649 F6X3S4 739 aa17.49■□□□□ 0.39
NCKIPSD-204ENST00000416649 F13A1P00488 732 aa17.49■□□□□ 0.39
NCKIPSD-204ENST00000416649 ELF2Q15723 593 aa17.49■□□□□ 0.39
NCKIPSD-204ENST00000416649 ZNF397Q8NF99 534 aaPredicted RBP17.49■□□□□ 0.39
NCKIPSD-204ENST00000416649 FAM200AQ8TCP9 573 aa17.49■□□□□ 0.39
NCKIPSD-204ENST00000416649 CAPN2P17655 700 aa17.49■□□□□ 0.39
NCKIPSD-204ENST00000416649 ZSCAN25Q6NSZ9 544 aa17.49■□□□□ 0.39
NCKIPSD-204ENST00000416649 PAXIP1Q6ZW49 1069 aaPredicted RBP17.49■□□□□ 0.39
NCKIPSD-204ENST00000416649 MSH6P52701 1360 aa17.49■□□□□ 0.39
NCKIPSD-204ENST00000416649 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP17.48■□□□□ 0.39
NCKIPSD-204ENST00000416649 USHBP1Q8N6Y0 703 aa17.48■□□□□ 0.39
NCKIPSD-204ENST00000416649 HMMRO75330 724 aa17.48■□□□□ 0.39
NCKIPSD-204ENST00000416649 SYCP1Q15431 976 aa17.48■□□□□ 0.39
NCKIPSD-204ENST00000416649 ATP6V1DQ9Y5K8 247 aa17.48■□□□□ 0.39
NCKIPSD-204ENST00000416649 LRRC7Q96NW7 1537 aa17.48■□□□□ 0.39
NCKIPSD-204ENST00000416649 SETD1BQ9UPS6 1966 aaKnown RBP17.48■□□□□ 0.39
NCKIPSD-204ENST00000416649 RGS12O14924 1447 aa17.48■□□□□ 0.39
NCKIPSD-204ENST00000416649 KNDC1Q76NI1 1749 aa17.48■□□□□ 0.39
NCKIPSD-204ENST00000416649 CHMLP26374 656 aa17.48■□□□□ 0.39
NCKIPSD-204ENST00000416649 PSME1Q06323 249 aa17.48■□□□□ 0.39
NCKIPSD-204ENST00000416649 FBXO38Q6PIJ6 1188 aa17.48■□□□□ 0.39
NCKIPSD-204ENST00000416649 ATP10DQ9P241 1426 aa17.47■□□□□ 0.39
NCKIPSD-204ENST00000416649 MAP4K4O95819 1239 aaPredicted RBP17.47■□□□□ 0.39
NCKIPSD-204ENST00000416649 DDX17Q92841 729 aaKnown RBP17.47■□□□□ 0.39
NCKIPSD-204ENST00000416649 GTF3C6Q969F1 213 aa17.47■□□□□ 0.39
NCKIPSD-204ENST00000416649 TRMT1Q9NXH9 659 aaKnown RBP17.47■□□□□ 0.39
NCKIPSD-204ENST00000416649 RTL1A6NKG5 1358 aa17.47■□□□□ 0.39
NCKIPSD-204ENST00000416649 CPA1P15085 419 aa17.47■□□□□ 0.39
NCKIPSD-204ENST00000416649 ANAPC15P60006 121 aa17.47■□□□□ 0.39
NCKIPSD-204ENST00000416649 TYRO3Q06418 890 aa17.47■□□□□ 0.39
NCKIPSD-204ENST00000416649 ANO6Q4KMQ2 910 aa17.47■□□□□ 0.39
NCKIPSD-204ENST00000416649 PHF8Q9UPP1 1060 aa17.47■□□□□ 0.39
NCKIPSD-204ENST00000416649 MAP3K11Q16584 847 aa17.46■□□□□ 0.39
NCKIPSD-204ENST00000416649 CACTINQ8WUQ7 758 aaKnown RBP17.46■□□□□ 0.39
NCKIPSD-204ENST00000416649 ZSCAN21Q9Y5A6 473 aaPredicted RBP17.46■□□□□ 0.39
NCKIPSD-204ENST00000416649 FERMT3Q86UX7 667 aa17.46■□□□□ 0.39
NCKIPSD-204ENST00000416649 PROSER2Q86WR7 435 aaPredicted RBP17.46■□□□□ 0.39
NCKIPSD-204ENST00000416649 NUP62CLQ9H1M0 184 aa17.46■□□□□ 0.39
NCKIPSD-204ENST00000416649 CLIP2Q9UDT6 1046 aa17.46■□□□□ 0.39
NCKIPSD-204ENST00000416649 UNC5CLQ8IV45 518 aa17.45■□□□□ 0.38
NCKIPSD-204ENST00000416649 CCDC83Q8IWF9 413 aa17.45■□□□□ 0.38
NCKIPSD-204ENST00000416649 ZBTB9Q96C00 473 aa17.45■□□□□ 0.38
NCKIPSD-204ENST00000416649 USP27XA6NNY8 438 aa17.45■□□□□ 0.38
NCKIPSD-204ENST00000416649 FAM173BQ6P4H8 233 aa17.45■□□□□ 0.38
NCKIPSD-204ENST00000416649 NOL10Q9BSC4 688 aaKnown RBP17.45■□□□□ 0.38
NCKIPSD-204ENST00000416649 IL25Q9H293 177 aa17.45■□□□□ 0.38
NCKIPSD-204ENST00000416649 ANKRD26Q9UPS8 1709 aa17.45■□□□□ 0.38
NCKIPSD-204ENST00000416649 AK2P54819 239 aa17.44■□□□□ 0.38
NCKIPSD-204ENST00000416649 RBM6P78332 1123 aaKnown RBP17.44■□□□□ 0.38
NCKIPSD-204ENST00000416649 TAF7LQ5H9L4 462 aa17.44■□□□□ 0.38
NCKIPSD-204ENST00000416649 CBX8Q9HC52 389 aa17.44■□□□□ 0.38
NCKIPSD-204ENST00000416649 MRVI1Q9Y6F6 885 aa17.44■□□□□ 0.38
NCKIPSD-204ENST00000416649 DIP2AQ14689 1571 aa17.44■□□□□ 0.38
NCKIPSD-204ENST00000416649 ARID5BQ14865 1188 aa17.44■□□□□ 0.38
NCKIPSD-204ENST00000416649 ZFP91Q96JP5 570 aaPredicted RBP17.44■□□□□ 0.38
NCKIPSD-204ENST00000416649 ITSN1Q15811 1721 aa17.44■□□□□ 0.38
NCKIPSD-204ENST00000416649 GOLGA6L4A6NEF3 574 aa17.44■□□□□ 0.38
NCKIPSD-204ENST00000416649 HNRNPH2P55795 449 aaKnown RBP17.44■□□□□ 0.38
NCKIPSD-204ENST00000416649 PTPN14Q15678 1187 aa17.44■□□□□ 0.38
NCKIPSD-204ENST00000416649 LIG1P18858 919 aa17.43■□□□□ 0.38
NCKIPSD-204ENST00000416649 TNNT3P45378 269 aaPredicted RBP17.43■□□□□ 0.38
NCKIPSD-204ENST00000416649 TNMDQ9H2S6 317 aa17.43■□□□□ 0.38
NCKIPSD-204ENST00000416649 GJB2P29033 226 aa17.43■□□□□ 0.38
NCKIPSD-204ENST00000416649 ZNF75DP51815 510 aa17.43■□□□□ 0.38
NCKIPSD-204ENST00000416649 CCDC144BQ3MJ40 725 aa17.43■□□□□ 0.38
NCKIPSD-204ENST00000416649 CCDC144CPQ8IYA2 1237 aa17.43■□□□□ 0.38
NCKIPSD-204ENST00000416649 DDX54Q8TDD1 881 aaKnown RBP17.43■□□□□ 0.38
NCKIPSD-204ENST00000416649 ZNF853P0CG23 659 aa17.41■□□□□ 0.38
NCKIPSD-204ENST00000416649 AATKQ6ZMQ8 1374 aa17.41■□□□□ 0.38
NCKIPSD-204ENST00000416649 LARGE1O95461 756 aa17.41■□□□□ 0.38
NCKIPSD-204ENST00000416649 AEBP2Q6ZN18 517 aaPredicted RBP17.41■□□□□ 0.38
NCKIPSD-204ENST00000416649 SYTL4Q96C24 671 aaPredicted RBP17.41■□□□□ 0.38
NCKIPSD-204ENST00000416649 LRRCC1Q9C099 1032 aa17.41■□□□□ 0.38
NCKIPSD-204ENST00000416649 OSBPL3Q9H4L5 887 aa17.41■□□□□ 0.38
NCKIPSD-204ENST00000416649 DACT1Q9NYF0 836 aa17.41■□□□□ 0.38
NCKIPSD-204ENST00000416649 POLR3GO15318 223 aaPredicted RBP17.41■□□□□ 0.38
NCKIPSD-204ENST00000416649 FILIP1Q7Z7B0 1213 aa17.41■□□□□ 0.38
NCKIPSD-204ENST00000416649 EYA1Q99502 592 aa17.41■□□□□ 0.38
NCKIPSD-204ENST00000416649 DNAJC25Q9H1X3 360 aa17.41■□□□□ 0.38
NCKIPSD-204ENST00000416649 LIMCH1Q9UPQ0 1083 aa17.41■□□□□ 0.38
NCKIPSD-204ENST00000416649 RUFY3Q7L099 469 aa17.4■□□□□ 0.38
NCKIPSD-204ENST00000416649 IL1RAPL2Q9NP60 686 aa17.4■□□□□ 0.38
NCKIPSD-204ENST00000416649 MON2Q7Z3U7 1717 aa17.39■□□□□ 0.38
NCKIPSD-204ENST00000416649 OVOS2A0A0J9YW53 1432 aa17.39■□□□□ 0.38
NCKIPSD-204ENST00000416649 OVOS2Q6IE36 1432 aa17.39■□□□□ 0.38
NCKIPSD-204ENST00000416649 SLC4A2P04920 1241 aa17.39■□□□□ 0.37
NCKIPSD-204ENST00000416649 ZNF165P49910 485 aa17.39■□□□□ 0.37
NCKIPSD-204ENST00000416649 TTC6Q86TZ1 520 aa17.39■□□□□ 0.37
NCKIPSD-204ENST00000416649 TFIP11Q9UBB9 837 aaKnown RBP17.39■□□□□ 0.37
NCKIPSD-204ENST00000416649 CDK12Q9NYV4 1490 aaPredicted RBP17.39■□□□□ 0.37
NCKIPSD-204ENST00000416649 MTMR6Q9Y217 621 aa17.39■□□□□ 0.37
NCKIPSD-204ENST00000416649 CASTP20810 708 aaKnown RBP17.38■□□□□ 0.37
NCKIPSD-204ENST00000416649 RASEFQ8IZ41 740 aa17.38■□□□□ 0.37
NCKIPSD-204ENST00000416649 NEK11Q8NG66 645 aa17.38■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms