RNA–Protein interactions for RNA: ENST00000409604.1

SNX13-202, Transcript of sorting nexin 13, humanhuman

TSL 1 (best) BASIC

Gene SNX13, Length 4,146 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX13-202ENST00000409604 PNMA6EA0A0J9YXQ4 647 aa13.75□□□□□ -0.21
SNX13-202ENST00000409604 MINDY4BA8MYZ0 360 aa13.75□□□□□ -0.21
SNX13-202ENST00000409604 RHPN1Q8TCX5 695 aa13.75□□□□□ -0.21
SNX13-202ENST00000409604 TAF5LO75529 589 aa13.75□□□□□ -0.21
SNX13-202ENST00000409604 LRRFIP1Q32MZ4 808 aaKnown RBP13.75□□□□□ -0.21
SNX13-202ENST00000409604 GNL3LQ9NVN8 582 aaKnown RBP13.75□□□□□ -0.21
SNX13-202ENST00000409604 TRPM1Q7Z4N2 1603 aa13.75□□□□□ -0.21
SNX13-202ENST00000409604 RXRBP28702 533 aa13.75□□□□□ -0.21
SNX13-202ENST00000409604 AGLP35573 1532 aa13.75□□□□□ -0.21
SNX13-202ENST00000409604 HAND2P61296 217 aa13.74□□□□□ -0.21
SNX13-202ENST00000409604 LMTK2Q8IWU2 1503 aa13.74□□□□□ -0.21
SNX13-202ENST00000409604 H3BQV1 296 aa13.74□□□□□ -0.21
SNX13-202ENST00000409604 IFFO2Q5TF58 517 aa13.74□□□□□ -0.21
SNX13-202ENST00000409604 CCDC82Q8N4S0 544 aa13.74□□□□□ -0.21
SNX13-202ENST00000409604 RAB11FIP4Q86YS3 637 aa13.74□□□□□ -0.21
SNX13-202ENST00000409604 IKQ13123 557 aaPredicted RBP13.73□□□□□ -0.21
SNX13-202ENST00000409604 FAM196AQ6ZSG2 479 aa13.73□□□□□ -0.21
SNX13-202ENST00000409604 AMOTL1Q8IY63 956 aa13.73□□□□□ -0.21
SNX13-202ENST00000409604 TCEANC2Q96MN5 208 aa13.73□□□□□ -0.21
SNX13-202ENST00000409604 UTP14AQ9BVJ6 771 aaKnown RBP13.73□□□□□ -0.21
SNX13-202ENST00000409604 ATP7BP35670 1465 aa13.73□□□□□ -0.21
SNX13-202ENST00000409604 TULP4Q9NRJ4 1543 aa13.73□□□□□ -0.21
SNX13-202ENST00000409604 CCDC87Q9NVE4 849 aa13.73□□□□□ -0.21
SNX13-202ENST00000409604 RNF20Q5VTR2 975 aa13.73□□□□□ -0.21
SNX13-202ENST00000409604 TPTE2Q6XPS3 522 aa13.73□□□□□ -0.21
SNX13-202ENST00000409604 CEP85Q6P2H3 762 aa13.72□□□□□ -0.21
SNX13-202ENST00000409604 ZBTB7BO15156 539 aaPredicted RBP13.72□□□□□ -0.21
SNX13-202ENST00000409604 TDO2P48775 406 aa13.72□□□□□ -0.21
SNX13-202ENST00000409604 SYNE3Q6ZMZ3 975 aa13.72□□□□□ -0.21
SNX13-202ENST00000409604 KRT27Q7Z3Y8 459 aa13.72□□□□□ -0.21
SNX13-202ENST00000409604 SUCLG2Q96I99 432 aa13.72□□□□□ -0.21
SNX13-202ENST00000409604 BACH2Q9BYV9 841 aa13.72□□□□□ -0.21
SNX13-202ENST00000409604 ZBTB40Q9NUA8 1239 aa13.72□□□□□ -0.21
SNX13-202ENST00000409604 CAVIN4Q5BKX8 364 aa13.72□□□□□ -0.21
SNX13-202ENST00000409604 SRP68Q9UHB9 627 aaKnown RBP13.72□□□□□ -0.21
SNX13-202ENST00000409604 RASSF8Q8NHQ8 419 aa13.71□□□□□ -0.21
SNX13-202ENST00000409604 TFCP2Q12800 502 aa13.71□□□□□ -0.21
SNX13-202ENST00000409604 USPL1Q5W0Q7 1092 aa13.71□□□□□ -0.21
SNX13-202ENST00000409604 AKAP17AQ02040 695 aaKnown RBP13.71□□□□□ -0.21
SNX13-202ENST00000409604 ANKRD18AQ8IVF6 992 aa13.71□□□□□ -0.21
SNX13-202ENST00000409604 SYNE4Q8N205 404 aa13.71□□□□□ -0.21
SNX13-202ENST00000409604 AAMPQ13685 434 aa13.71□□□□□ -0.22
SNX13-202ENST00000409604 PRPF40BQ6NWY9 871 aaKnown RBP13.71□□□□□ -0.22
SNX13-202ENST00000409604 RBM26Q5T8P6 1007 aaKnown RBP13.7□□□□□ -0.22
SNX13-202ENST00000409604 ANKRD44Q8N8A2 993 aa13.7□□□□□ -0.22
SNX13-202ENST00000409604 AIDAQ96BJ3 306 aa13.7□□□□□ -0.22
SNX13-202ENST00000409604 AATKQ6ZMQ8 1374 aa13.7□□□□□ -0.22
SNX13-202ENST00000409604 CRKLP46109 303 aaKnown RBP13.7□□□□□ -0.22
SNX13-202ENST00000409604 CREBRFQ8IUR6 639 aa13.7□□□□□ -0.22
SNX13-202ENST00000409604 CDCA7Q9BWT1 371 aaPredicted RBP13.7□□□□□ -0.22
SNX13-202ENST00000409604 CPS1P31327 1500 aa13.7□□□□□ -0.22
SNX13-202ENST00000409604 GLRX3O76003 335 aaKnown RBP13.7□□□□□ -0.22
SNX13-202ENST00000409604 ECM2O94769 699 aaPredicted RBP13.7□□□□□ -0.22
SNX13-202ENST00000409604 CLSTN1O94985 981 aa13.7□□□□□ -0.22
SNX13-202ENST00000409604 NUP133Q8WUM0 1156 aa13.7□□□□□ -0.22
SNX13-202ENST00000409604 ARHGAP45Q92619 1136 aa13.7□□□□□ -0.22
SNX13-202ENST00000409604 CDC5LQ99459 802 aaKnown RBP13.7□□□□□ -0.22
SNX13-202ENST00000409604 ATP8B2P98198 1209 aa13.69□□□□□ -0.22
SNX13-202ENST00000409604 ATP2B3Q16720 1220 aa13.69□□□□□ -0.22
SNX13-202ENST00000409604 CCDC152Q4G0S7 254 aa13.69□□□□□ -0.22
SNX13-202ENST00000409604 EDC3Q96F86 508 aaKnown RBP13.69□□□□□ -0.22
SNX13-202ENST00000409604 ECHDC1Q9NTX5 307 aa13.69□□□□□ -0.22
SNX13-202ENST00000409604 CEP170BQ9Y4F5 1589 aaPredicted RBP13.69□□□□□ -0.22
SNX13-202ENST00000409604 ERVV-2B6SEH9 535 aa13.69□□□□□ -0.22
SNX13-202ENST00000409604 MARCH6O60337 910 aa13.69□□□□□ -0.22
SNX13-202ENST00000409604 CEBPZQ03701 1054 aaKnown RBP13.69□□□□□ -0.22
SNX13-202ENST00000409604 SF3A1Q15459 793 aaKnown RBP13.69□□□□□ -0.22
SNX13-202ENST00000409604 CNBD1Q8NA66 436 aa13.69□□□□□ -0.22
SNX13-202ENST00000409604 JAKMIP1Q96N16 626 aaKnown RBP13.69□□□□□ -0.22
SNX13-202ENST00000409604 PLBD2Q8NHP8 589 aa13.69□□□□□ -0.22
SNX13-202ENST00000409604 METTL22Q9BUU2 404 aaPredicted RBP13.69□□□□□ -0.22
SNX13-202ENST00000409604 PREX1Q8TCU6 1659 aa13.69□□□□□ -0.22
SNX13-202ENST00000409604 ERICH2A1L162 156 aa13.68□□□□□ -0.22
SNX13-202ENST00000409604 ST5P78524 1137 aa13.68□□□□□ -0.22
SNX13-202ENST00000409604 DZIP1Q86YF9 867 aaKnown RBP13.68□□□□□ -0.22
SNX13-202ENST00000409604 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.68□□□□□ -0.22
SNX13-202ENST00000409604 ITGA6P23229 1130 aa13.68□□□□□ -0.22
SNX13-202ENST00000409604 USP44Q9H0E7 712 aa13.68□□□□□ -0.22
SNX13-202ENST00000409604 GCKRQ14397 625 aa13.67□□□□□ -0.22
SNX13-202ENST00000409604 ATF5Q9Y2D1 282 aaPredicted RBP13.67□□□□□ -0.22
SNX13-202ENST00000409604 PARP3Q9Y6F1 533 aa13.67□□□□□ -0.22
SNX13-202ENST00000409604 SLC5A1P13866 664 aa13.67□□□□□ -0.22
SNX13-202ENST00000409604 LRRC2Q9BYS8 371 aa13.67□□□□□ -0.22
SNX13-202ENST00000409604 AKAP2Q9Y2D5 859 aa13.67□□□□□ -0.22
SNX13-202ENST00000409604 SH3TC1Q8TE82 1336 aa13.67□□□□□ -0.22
SNX13-202ENST00000409604 ALDH1L1O75891 902 aa13.67□□□□□ -0.22
SNX13-202ENST00000409604 MIGA1Q8NAN2 632 aa13.67□□□□□ -0.22
SNX13-202ENST00000409604 STK32BQ9NY57 414 aa13.67□□□□□ -0.22
SNX13-202ENST00000409604 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.66□□□□□ -0.22
SNX13-202ENST00000409604 SNAP23O00161 211 aa13.66□□□□□ -0.22
SNX13-202ENST00000409604 PTMAP06454 111 aaKnown RBP13.66□□□□□ -0.22
SNX13-202ENST00000409604 SDSP20132 328 aa13.66□□□□□ -0.22
SNX13-202ENST00000409604 DDX11Q96FC9 970 aa13.66□□□□□ -0.22
SNX13-202ENST00000409604 SMC3Q9UQE7 1217 aa13.66□□□□□ -0.22
SNX13-202ENST00000409604 RICTORQ6R327 1708 aa13.66□□□□□ -0.22
SNX13-202ENST00000409604 NBPF14Q5TI25 921 aa13.66□□□□□ -0.22
SNX13-202ENST00000409604 DBNDD2Q9BQY9 259 aa13.66□□□□□ -0.22
SNX13-202ENST00000409604 TNS3Q68CZ2 1445 aa13.66□□□□□ -0.22
SNX13-202ENST00000409604 TBC1D9Q6ZT07 1266 aa13.66□□□□□ -0.22
SNX13-202ENST00000409604 PDE1AP54750 535 aa13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms