RNA–Protein interactions for RNA: ENST00000409458.3

GPNMB-203, Transcript of glycoprotein nmb, humanhuman

TSL 1 (best) BASIC

Gene GPNMB, Length 1,673 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-203ENST00000409458 NEURL1BA8MQ27 555 aa17.57■□□□□ 0.4
GPNMB-203ENST00000409458 ONECUT3O60422 494 aaPredicted RBP17.57■□□□□ 0.4
GPNMB-203ENST00000409458 NEXNQ0ZGT2 675 aa17.57■□□□□ 0.4
GPNMB-203ENST00000409458 RREB1Q92766 1687 aa17.57■□□□□ 0.4
GPNMB-203ENST00000409458 PNMA6EA0A0J9YXQ4 647 aa17.56■□□□□ 0.4
GPNMB-203ENST00000409458 HMMRO75330 724 aa17.56■□□□□ 0.4
GPNMB-203ENST00000409458 CHD1LQ86WJ1 897 aa17.56■□□□□ 0.4
GPNMB-203ENST00000409458 QTRT2Q9H974 415 aaKnown RBP17.56■□□□□ 0.4
GPNMB-203ENST00000409458 C9orf78Q9NZ63 289 aaPredicted RBP17.56■□□□□ 0.4
GPNMB-203ENST00000409458 SBF2Q86WG5 1849 aa17.56■□□□□ 0.4
GPNMB-203ENST00000409458 COL5A3P25940 1745 aaPredicted RBP17.56■□□□□ 0.4
GPNMB-203ENST00000409458 ZNF831Q5JPB2 1677 aa17.56■□□□□ 0.4
GPNMB-203ENST00000409458 GRM8O00222 908 aa17.55■□□□□ 0.4
GPNMB-203ENST00000409458 ATP8B2P98198 1209 aa17.55■□□□□ 0.4
GPNMB-203ENST00000409458 FAM182BQ5T319 152 aa17.55■□□□□ 0.4
GPNMB-203ENST00000409458 ANKRD45Q5TZF3 282 aa17.55■□□□□ 0.4
GPNMB-203ENST00000409458 SEPT12Q8IYM1 358 aa17.55■□□□□ 0.4
GPNMB-203ENST00000409458 LNPKQ9C0E8 428 aa17.55■□□□□ 0.4
GPNMB-203ENST00000409458 UTYO14607 1347 aa17.55■□□□□ 0.4
GPNMB-203ENST00000409458 LOC102724428A0A0B4J2F2 783 aa17.55■□□□□ 0.4
GPNMB-203ENST00000409458 SIK1P57059 783 aa17.55■□□□□ 0.4
GPNMB-203ENST00000409458 PTF1AQ7RTS3 328 aa17.55■□□□□ 0.4
GPNMB-203ENST00000409458 ZBTB1Q9Y2K1 713 aa17.55■□□□□ 0.4
GPNMB-203ENST00000409458 GCKRQ14397 625 aa17.54■□□□□ 0.4
GPNMB-203ENST00000409458 ZBTB3Q9H5J0 574 aa17.54■□□□□ 0.4
GPNMB-203ENST00000409458 ZNF330Q9Y3S2 320 aaPredicted RBP17.54■□□□□ 0.4
GPNMB-203ENST00000409458 BRWD3Q6RI45 1802 aa17.53■□□□□ 0.4
GPNMB-203ENST00000409458 ATP6V1AP38606 617 aa17.53■□□□□ 0.4
GPNMB-203ENST00000409458 ITPK1Q13572 414 aa17.53■□□□□ 0.4
GPNMB-203ENST00000409458 SMARCC1Q92922 1105 aaPredicted RBP17.53■□□□□ 0.4
GPNMB-203ENST00000409458 ATP5J2-PTCD1G3V325 749 aa17.52■□□□□ 0.4
GPNMB-203ENST00000409458 SUCLG2Q96I99 432 aa17.52■□□□□ 0.4
GPNMB-203ENST00000409458 RBM19Q9Y4C8 960 aaKnown RBP17.52■□□□□ 0.4
GPNMB-203ENST00000409458 PPP1R42Q7Z4L9 355 aa17.52■□□□□ 0.39
GPNMB-203ENST00000409458 SSH3Q8TE77 659 aa17.52■□□□□ 0.39
GPNMB-203ENST00000409458 MYH14Q7Z406 1995 aaKnown RBP17.51■□□□□ 0.39
GPNMB-203ENST00000409458 POLA2Q14181 598 aa17.51■□□□□ 0.39
GPNMB-203ENST00000409458 KIF6Q6ZMV9 814 aa17.51■□□□□ 0.39
GPNMB-203ENST00000409458 KAZALD1Q96I82 304 aa17.51■□□□□ 0.39
GPNMB-203ENST00000409458 BACH2Q9BYV9 841 aa17.51■□□□□ 0.39
GPNMB-203ENST00000409458 ANKRD36CQ5JPF3 1778 aa17.5■□□□□ 0.39
GPNMB-203ENST00000409458 C8orf34Q49A92 452 aa17.5■□□□□ 0.39
GPNMB-203ENST00000409458 EXOC6BQ9Y2D4 811 aa17.5■□□□□ 0.39
GPNMB-203ENST00000409458 APBB1O00213 710 aa17.49■□□□□ 0.39
GPNMB-203ENST00000409458 SRGAP3O43295 1099 aa17.49■□□□□ 0.39
GPNMB-203ENST00000409458 CRKLP46109 303 aaKnown RBP17.49■□□□□ 0.39
GPNMB-203ENST00000409458 MTX1Q13505 466 aa17.49■□□□□ 0.39
GPNMB-203ENST00000409458 FAM161AQ3B820 660 aa17.49■□□□□ 0.39
GPNMB-203ENST00000409458 INTS5Q6P9B9 1019 aaKnown RBP17.49■□□□□ 0.39
GPNMB-203ENST00000409458 LY75O60449 1722 aa17.49■□□□□ 0.39
GPNMB-203ENST00000409458 IL6STP40189 918 aaPredicted RBP17.48■□□□□ 0.39
GPNMB-203ENST00000409458 BICC1Q9H694 974 aaKnown RBP17.48■□□□□ 0.39
GPNMB-203ENST00000409458 CCDC87Q9NVE4 849 aa17.48■□□□□ 0.39
GPNMB-203ENST00000409458 HDAC5Q9UQL6 1122 aa17.48■□□□□ 0.39
GPNMB-203ENST00000409458 MAP3K15Q6ZN16 1313 aa17.48■□□□□ 0.39
GPNMB-203ENST00000409458 SMARCA5O60264 1052 aaPredicted RBP17.48■□□□□ 0.39
GPNMB-203ENST00000409458 A0A087WZG4 1122 aa17.47■□□□□ 0.39
GPNMB-203ENST00000409458 NUP98P52948 1817 aa17.47■□□□□ 0.39
GPNMB-203ENST00000409458 CASP7P55210 303 aa17.47■□□□□ 0.39
GPNMB-203ENST00000409458 UBE3BQ7Z3V4 1068 aa17.47■□□□□ 0.39
GPNMB-203ENST00000409458 JARID2Q92833 1246 aaPredicted RBP17.47■□□□□ 0.39
GPNMB-203ENST00000409458 ISCA1Q9BUE6 129 aa17.47■□□□□ 0.39
GPNMB-203ENST00000409458 CWC25Q9NXE8 425 aaPredicted RBP17.47■□□□□ 0.39
GPNMB-203ENST00000409458 COL15A1P39059 1388 aa17.46■□□□□ 0.39
GPNMB-203ENST00000409458 ZNF772Q68DY9 489 aaPredicted RBP17.46■□□□□ 0.39
GPNMB-203ENST00000409458 EIF5P55010 431 aaKnown RBP17.45■□□□□ 0.38
GPNMB-203ENST00000409458 TCIRG1Q13488 830 aa17.45■□□□□ 0.38
GPNMB-203ENST00000409458 EPHA10Q5JZY3 1008 aa17.45■□□□□ 0.38
GPNMB-203ENST00000409458 CCDC191Q8NCU4 936 aa17.45■□□□□ 0.38
GPNMB-203ENST00000409458 LINC00116Q8NCU8 138 aa17.45■□□□□ 0.38
GPNMB-203ENST00000409458 ARXQ96QS3 562 aa17.45■□□□□ 0.38
GPNMB-203ENST00000409458 KCNQ4P56696 695 aa17.45■□□□□ 0.38
GPNMB-203ENST00000409458 HLFQ16534 295 aa17.45■□□□□ 0.38
GPNMB-203ENST00000409458 GIGYF2Q6Y7W6 1299 aaKnown RBP17.45■□□□□ 0.38
GPNMB-203ENST00000409458 DZIP3Q86Y13 1208 aaKnown RBP17.45■□□□□ 0.38
GPNMB-203ENST00000409458 C16orf71Q8IYS4 520 aaPredicted RBP17.45■□□□□ 0.38
GPNMB-203ENST00000409458 ZBTB47Q9UFB7 747 aaPredicted RBP17.45■□□□□ 0.38
GPNMB-203ENST00000409458 BCORQ6W2J9 1755 aa17.44■□□□□ 0.38
GPNMB-203ENST00000409458 H7C1W4 665 aa17.44■□□□□ 0.38
GPNMB-203ENST00000409458 OTUD7AQ8TE49 926 aaPredicted RBP17.44■□□□□ 0.38
GPNMB-203ENST00000409458 BCL11AQ9H165 835 aa17.44■□□□□ 0.38
GPNMB-203ENST00000409458 TBC1D2BQ9UPU7 963 aa17.44■□□□□ 0.38
GPNMB-203ENST00000409458 TAF1LQ8IZX4 1826 aa17.44■□□□□ 0.38
GPNMB-203ENST00000409458 SURF6O75683 361 aaKnown RBP17.43■□□□□ 0.38
GPNMB-203ENST00000409458 RBM6P78332 1123 aaKnown RBP17.43■□□□□ 0.38
GPNMB-203ENST00000409458 KRT27Q7Z3Y8 459 aa17.43■□□□□ 0.38
GPNMB-203ENST00000409458 PLEKHM2Q8IWE5 1019 aa17.43■□□□□ 0.38
GPNMB-203ENST00000409458 LRRCC1Q9C099 1032 aa17.43■□□□□ 0.38
GPNMB-203ENST00000409458 CNTNAP4Q9C0A0 1308 aa17.42■□□□□ 0.38
GPNMB-203ENST00000409458 ERVV-1B6SEH8 477 aa17.42■□□□□ 0.38
GPNMB-203ENST00000409458 TRIM28Q13263 835 aaKnown RBP17.42■□□□□ 0.38
GPNMB-203ENST00000409458 RABL6Q3YEC7 729 aaPredicted RBP17.42■□□□□ 0.38
GPNMB-203ENST00000409458 NPM2Q86SE8 214 aaKnown RBP17.42■□□□□ 0.38
GPNMB-203ENST00000409458 NOP58Q9Y2X3 529 aaKnown RBP17.42■□□□□ 0.38
GPNMB-203ENST00000409458 RAB11FIP3O75154 756 aa17.41■□□□□ 0.38
GPNMB-203ENST00000409458 HSP90AB3PQ58FF7 597 aa17.41■□□□□ 0.38
GPNMB-203ENST00000409458 RTL5Q5HYW3 569 aaPredicted RBP17.41■□□□□ 0.38
GPNMB-203ENST00000409458 BCL11BQ9C0K0 894 aaPredicted RBP17.41■□□□□ 0.38
GPNMB-203ENST00000409458 PA2G4Q9UQ80 394 aaKnown RBP17.41■□□□□ 0.38
GPNMB-203ENST00000409458 CCNL1Q9UK58 526 aaPredicted RBP17.4■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms