RNA–Protein interactions for RNA: ENST00000407082.3

SMARCB1-203, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 5 BASIC

Gene SMARCB1, Length 1,182 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-203ENST00000407082 CABP4P57796 275 aa16.33■□□□□ 0.2
SMARCB1-203ENST00000407082 DDR1Q08345 913 aa16.33■□□□□ 0.2
SMARCB1-203ENST00000407082 ALDH1L2Q3SY69 923 aa16.33■□□□□ 0.2
SMARCB1-203ENST00000407082 RTF1Q92541 710 aaKnown RBP16.33■□□□□ 0.2
SMARCB1-203ENST00000407082 RWDD1Q9H446 243 aaPredicted RBP16.33■□□□□ 0.2
SMARCB1-203ENST00000407082 LGR6Q9HBX8 967 aa16.33■□□□□ 0.2
SMARCB1-203ENST00000407082 CNTNAP4Q9C0A0 1308 aa16.33■□□□□ 0.2
SMARCB1-203ENST00000407082 ARFGEF1Q9Y6D6 1849 aa16.33■□□□□ 0.2
SMARCB1-203ENST00000407082 GLTPD2A6NH11 291 aa16.32■□□□□ 0.2
SMARCB1-203ENST00000407082 RNMTO43148 476 aaKnown RBP16.32■□□□□ 0.2
SMARCB1-203ENST00000407082 BRCA1P38398 1863 aaKnown RBP16.32■□□□□ 0.2
SMARCB1-203ENST00000407082 FAM161AQ3B820 660 aa16.32■□□□□ 0.2
SMARCB1-203ENST00000407082 KIF16BQ96L93 1317 aa16.32■□□□□ 0.2
SMARCB1-203ENST00000407082 TRIM35Q9UPQ4 493 aa16.32■□□□□ 0.2
SMARCB1-203ENST00000407082 TNRC6CQ9HCJ0 1690 aaKnown RBP16.31■□□□□ 0.2
SMARCB1-203ENST00000407082 ERVV-2B6SEH9 535 aa16.31■□□□□ 0.2
SMARCB1-203ENST00000407082 HTATSF1O43719 755 aaKnown RBP16.31■□□□□ 0.2
SMARCB1-203ENST00000407082 LMNB1P20700 586 aa16.31■□□□□ 0.2
SMARCB1-203ENST00000407082 CRKLP46109 303 aaKnown RBP16.31■□□□□ 0.2
SMARCB1-203ENST00000407082 FTSJ3Q8IY81 847 aaKnown RBP16.31■□□□□ 0.2
SMARCB1-203ENST00000407082 IL17REQ8NFR9 667 aa16.31■□□□□ 0.2
SMARCB1-203ENST00000407082 PCNTO95613 3336 aa16.3■□□□□ 0.2
SMARCB1-203ENST00000407082 GNAI1P63096 354 aa16.3■□□□□ 0.2
SMARCB1-203ENST00000407082 MCM10Q7L590 875 aa16.3■□□□□ 0.2
SMARCB1-203ENST00000407082 DZIP1LQ8IYY4 767 aaKnown RBP16.3■□□□□ 0.2
SMARCB1-203ENST00000407082 MKRN1Q9UHC7 482 aaKnown RBP16.3■□□□□ 0.2
SMARCB1-203ENST00000407082 COG6Q9Y2V7 657 aa16.3■□□□□ 0.2
SMARCB1-203ENST00000407082 KDM6AO15550 1401 aaPredicted RBP16.29■□□□□ 0.2
SMARCB1-203ENST00000407082 ZPR1O75312 459 aa16.29■□□□□ 0.2
SMARCB1-203ENST00000407082 DCTN1Q14203 1278 aa16.29■□□□□ 0.2
SMARCB1-203ENST00000407082 SMC4Q9NTJ3 1288 aa16.29■□□□□ 0.2
SMARCB1-203ENST00000407082 SBF1O95248 1867 aa16.29■□□□□ 0.2
SMARCB1-203ENST00000407082 USP42Q9H9J4 1324 aaKnown RBP16.28■□□□□ 0.2
SMARCB1-203ENST00000407082 EXOSC9Q06265 439 aaKnown RBP16.28■□□□□ 0.2
SMARCB1-203ENST00000407082 MVPQ14764 893 aaKnown RBP16.28■□□□□ 0.2
SMARCB1-203ENST00000407082 NFATC2IPQ8NCF5 419 aa16.28■□□□□ 0.2
SMARCB1-203ENST00000407082 DDX19BQ9UMR2 479 aa16.28■□□□□ 0.2
SMARCB1-203ENST00000407082 POLRMTO00411 1230 aaKnown RBP16.27■□□□□ 0.2
SMARCB1-203ENST00000407082 BRPF1P55201 1214 aaPredicted RBP16.27■□□□□ 0.2
SMARCB1-203ENST00000407082 TEFQ10587 303 aa16.27■□□□□ 0.2
SMARCB1-203ENST00000407082 USPL1Q5W0Q7 1092 aa16.27■□□□□ 0.2
SMARCB1-203ENST00000407082 DPY19L2Q6NUT2 758 aa16.27■□□□□ 0.2
SMARCB1-203ENST00000407082 PANK1Q8TE04 598 aa16.27■□□□□ 0.2
SMARCB1-203ENST00000407082 SLC52A2Q9HAB3 445 aa16.27■□□□□ 0.2
SMARCB1-203ENST00000407082 ZC3H4Q9UPT8 1303 aaKnown RBP16.26■□□□□ 0.19
SMARCB1-203ENST00000407082 DLG5Q8TDM6 1919 aa16.26■□□□□ 0.19
SMARCB1-203ENST00000407082 TM4SF1P30408 202 aa16.26■□□□□ 0.19
SMARCB1-203ENST00000407082 IFT57Q9NWB7 429 aa16.26■□□□□ 0.19
SMARCB1-203ENST00000407082 CEMIPQ8WUJ3 1361 aa16.26■□□□□ 0.19
SMARCB1-203ENST00000407082 TTLL6Q8N841 843 aa16.25■□□□□ 0.19
SMARCB1-203ENST00000407082 THUMPD2Q9BTF0 503 aaKnown RBP16.25■□□□□ 0.19
SMARCB1-203ENST00000407082 ZNF219Q9P2Y4 722 aaPredicted RBP16.25■□□□□ 0.19
SMARCB1-203ENST00000407082 MYH14Q7Z406 1995 aaKnown RBP16.25■□□□□ 0.19
SMARCB1-203ENST00000407082 SCN11AQ9UI33 1791 aa16.25■□□□□ 0.19
SMARCB1-203ENST00000407082 ATF7IPQ6VMQ6 1270 aa16.24■□□□□ 0.19
SMARCB1-203ENST00000407082 C2CD5Q86YS7 1000 aa16.24■□□□□ 0.19
SMARCB1-203ENST00000407082 DAXXQ9UER7 740 aaPredicted RBP16.24■□□□□ 0.19
SMARCB1-203ENST00000407082 FOXN1O15353 648 aa16.23■□□□□ 0.19
SMARCB1-203ENST00000407082 ARHGAP45Q92619 1136 aa16.23■□□□□ 0.19
SMARCB1-203ENST00000407082 TSR2Q969E8 191 aaKnown RBP16.23■□□□□ 0.19
SMARCB1-203ENST00000407082 ADAMTS7Q9UKP4 1686 aa16.23■□□□□ 0.19
SMARCB1-203ENST00000407082 COL5A3P25940 1745 aaPredicted RBP16.22■□□□□ 0.19
SMARCB1-203ENST00000407082 VIRMAQ69YN4 1812 aaKnown RBP16.22■□□□□ 0.19
SMARCB1-203ENST00000407082 POTECB2RU33 542 aa16.22■□□□□ 0.19
SMARCB1-203ENST00000407082 TAF7Q15545 349 aaPredicted RBP16.22■□□□□ 0.19
SMARCB1-203ENST00000407082 INTS5Q6P9B9 1019 aaKnown RBP16.22■□□□□ 0.19
SMARCB1-203ENST00000407082 NPM2Q86SE8 214 aaKnown RBP16.22■□□□□ 0.19
SMARCB1-203ENST00000407082 AIDAQ96BJ3 306 aa16.22■□□□□ 0.19
SMARCB1-203ENST00000407082 CREBZFQ9NS37 354 aa16.22■□□□□ 0.19
SMARCB1-203ENST00000407082 BTBD11A6QL63 1104 aa16.21■□□□□ 0.19
SMARCB1-203ENST00000407082 H0YIN7 160 aa16.21■□□□□ 0.19
SMARCB1-203ENST00000407082 NFIXQ14938 502 aa16.21■□□□□ 0.19
SMARCB1-203ENST00000407082 ERFEQ4G0M1 354 aa16.21■□□□□ 0.19
SMARCB1-203ENST00000407082 CHADLQ6NUI6 762 aa16.21■□□□□ 0.19
SMARCB1-203ENST00000407082 SSH1Q8WYL5 1049 aa16.21■□□□□ 0.19
SMARCB1-203ENST00000407082 ZNF622Q969S3 477 aaKnown RBP eCLIP16.21■□□□□ 0.19
SMARCB1-203ENST00000407082 MRC1P22897 1456 aa16.21■□□□□ 0.19
SMARCB1-203ENST00000407082 IGHDP01880 384 aa16.2■□□□□ 0.18
SMARCB1-203ENST00000407082 SERPINB2P05120 415 aa16.2■□□□□ 0.18
SMARCB1-203ENST00000407082 RGS3P49796 1198 aa16.2■□□□□ 0.18
SMARCB1-203ENST00000407082 SLC39A6Q13433 755 aa16.2■□□□□ 0.18
SMARCB1-203ENST00000407082 BICDL1Q6ZP65 573 aa16.2■□□□□ 0.18
SMARCB1-203ENST00000407082 DNAJC10Q8IXB1 793 aa16.2■□□□□ 0.18
SMARCB1-203ENST00000407082 CFAP44Q96MT7 982 aa16.2■□□□□ 0.18
SMARCB1-203ENST00000407082 ZNF831Q5JPB2 1677 aa16.2■□□□□ 0.18
SMARCB1-203ENST00000407082 CCDC88AQ3V6T2 1871 aa16.19■□□□□ 0.18
SMARCB1-203ENST00000407082 NFKBIEO00221 500 aa16.19■□□□□ 0.18
SMARCB1-203ENST00000407082 SLC34A2O95436 690 aa16.19■□□□□ 0.18
SMARCB1-203ENST00000407082 HDAC1Q13547 482 aaPredicted RBP16.19■□□□□ 0.18
SMARCB1-203ENST00000407082 BCL2L13Q9BXK5 485 aa16.19■□□□□ 0.18
SMARCB1-203ENST00000407082 MIS18AQ9NYP9 233 aa16.19■□□□□ 0.18
SMARCB1-203ENST00000407082 LAS1LQ9Y4W2 734 aaKnown RBP16.19■□□□□ 0.18
SMARCB1-203ENST00000407082 C21orf2O43822 256 aa16.18■□□□□ 0.18
SMARCB1-203ENST00000407082 ZNF853P0CG23 659 aa16.18■□□□□ 0.18
SMARCB1-203ENST00000407082 POTEIP0CG38 1075 aa16.18■□□□□ 0.18
SMARCB1-203ENST00000407082 POTEJP0CG39 1038 aa16.18■□□□□ 0.18
SMARCB1-203ENST00000407082 CTCFP49711 727 aaPredicted RBP16.18■□□□□ 0.18
SMARCB1-203ENST00000407082 PRDM10Q9NQV6 1147 aa16.18■□□□□ 0.18
SMARCB1-203ENST00000407082 NOB1Q9ULX3 412 aaKnown RBP16.18■□□□□ 0.18
SMARCB1-203ENST00000407082 ZNF790Q6PG37 636 aa16.17■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms