RNA–Protein interactions for RNA: ENST00000400018.7

SKA3-203, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SKA3, Length 2,745 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-203ENST00000400018 INTS5Q6P9B9 1019 aaKnown RBP14.73□□□□□ -0.05
SKA3-203ENST00000400018 KSR2Q6VAB6 950 aa14.73□□□□□ -0.05
SKA3-203ENST00000400018 KLHDC4Q8TBB5 520 aa14.73□□□□□ -0.05
SKA3-203ENST00000400018 SRCIN1Q9C0H9 1055 aa14.72□□□□□ -0.05
SKA3-203ENST00000400018 THSD7AQ9UPZ6 1657 aa14.72□□□□□ -0.05
SKA3-203ENST00000400018 SMARCA5O60264 1052 aaPredicted RBP14.72□□□□□ -0.05
SKA3-203ENST00000400018 BICDL1Q6ZP65 573 aa14.72□□□□□ -0.05
SKA3-203ENST00000400018 MYH14Q7Z406 1995 aaKnown RBP14.72□□□□□ -0.05
SKA3-203ENST00000400018 KDM2BQ8NHM5 1336 aa14.72□□□□□ -0.05
SKA3-203ENST00000400018 TNKS1BP1Q9C0C2 1729 aaKnown RBP14.72□□□□□ -0.05
SKA3-203ENST00000400018 CCNL1Q9UK58 526 aaPredicted RBP14.72□□□□□ -0.05
SKA3-203ENST00000400018 EPHA10Q5JZY3 1008 aa14.71□□□□□ -0.05
SKA3-203ENST00000400018 SRP68Q9UHB9 627 aaKnown RBP14.71□□□□□ -0.05
SKA3-203ENST00000400018 UBR2Q8IWV8 1755 aa14.71□□□□□ -0.06
SKA3-203ENST00000400018 STARD3NLO95772 234 aa14.71□□□□□ -0.06
SKA3-203ENST00000400018 EXOC6BQ9Y2D4 811 aa14.71□□□□□ -0.06
SKA3-203ENST00000400018 UBE3BQ7Z3V4 1068 aa14.7□□□□□ -0.06
SKA3-203ENST00000400018 C9orf78Q9NZ63 289 aaPredicted RBP14.7□□□□□ -0.06
SKA3-203ENST00000400018 C16orf71Q8IYS4 520 aaPredicted RBP14.7□□□□□ -0.06
SKA3-203ENST00000400018 PROM2Q8N271 834 aa14.7□□□□□ -0.06
SKA3-203ENST00000400018 LNPKQ9C0E8 428 aa14.7□□□□□ -0.06
SKA3-203ENST00000400018 PA2G4Q9UQ80 394 aaKnown RBP14.7□□□□□ -0.06
SKA3-203ENST00000400018 PAPPAQ13219 1627 aa14.69□□□□□ -0.06
SKA3-203ENST00000400018 ERICH6BQ5W0A0 696 aa14.69□□□□□ -0.06
SKA3-203ENST00000400018 CEP85Q6P2H3 762 aa14.69□□□□□ -0.06
SKA3-203ENST00000400018 FAM89AQ96GI7 184 aa14.69□□□□□ -0.06
SKA3-203ENST00000400018 SUCLG2Q96I99 432 aa14.69□□□□□ -0.06
SKA3-203ENST00000400018 BTAF1O14981 1849 aa14.68□□□□□ -0.06
SKA3-203ENST00000400018 NEURL1BA8MQ27 555 aa14.68□□□□□ -0.06
SKA3-203ENST00000400018 GNPATO15228 680 aa14.68□□□□□ -0.06
SKA3-203ENST00000400018 TSHZ3Q63HK5 1081 aa14.68□□□□□ -0.06
SKA3-203ENST00000400018 KAZALD1Q96I82 304 aa14.68□□□□□ -0.06
SKA3-203ENST00000400018 PDZRN3Q9UPQ7 1066 aa14.68□□□□□ -0.06
SKA3-203ENST00000400018 APBA3O96018 575 aa14.68□□□□□ -0.06
SKA3-203ENST00000400018 UBTFL1P0CB47 393 aaPredicted RBP14.68□□□□□ -0.06
SKA3-203ENST00000400018 CCT4P50991 539 aaKnown RBP14.68□□□□□ -0.06
SKA3-203ENST00000400018 DZIP3Q86Y13 1208 aaKnown RBP14.68□□□□□ -0.06
SKA3-203ENST00000400018 OTUD7AQ8TE49 926 aaPredicted RBP14.68□□□□□ -0.06
SKA3-203ENST00000400018 MS4A1P11836 297 aa14.67□□□□□ -0.06
SKA3-203ENST00000400018 CCDC87Q9NVE4 849 aa14.67□□□□□ -0.06
SKA3-203ENST00000400018 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP14.67□□□□□ -0.06
SKA3-203ENST00000400018 A0A087WZG4 1122 aa14.67□□□□□ -0.06
SKA3-203ENST00000400018 DEKP35659 375 aaKnown RBP14.67□□□□□ -0.06
SKA3-203ENST00000400018 DEFB132Q7Z7B7 95 aa14.67□□□□□ -0.06
SKA3-203ENST00000400018 METTL22Q9BUU2 404 aaPredicted RBP14.67□□□□□ -0.06
SKA3-203ENST00000400018 SIL1Q9H173 461 aa14.67□□□□□ -0.06
SKA3-203ENST00000400018 ANKRD45Q5TZF3 282 aa14.66□□□□□ -0.06
SKA3-203ENST00000400018 CHMP3Q9Y3E7 222 aa14.66□□□□□ -0.06
SKA3-203ENST00000400018 DDX58O95786 925 aaKnown RBP14.66□□□□□ -0.06
SKA3-203ENST00000400018 FAM196AQ6ZSG2 479 aa14.66□□□□□ -0.06
SKA3-203ENST00000400018 BICC1Q9H694 974 aaKnown RBP14.66□□□□□ -0.06
SKA3-203ENST00000400018 PPP1R42Q7Z4L9 355 aa14.65□□□□□ -0.06
SKA3-203ENST00000400018 NUTM1Q86Y26 1132 aa14.65□□□□□ -0.06
SKA3-203ENST00000400018 TJP1Q07157 1748 aa14.65□□□□□ -0.06
SKA3-203ENST00000400018 ATP10DQ9P241 1426 aa14.65□□□□□ -0.06
SKA3-203ENST00000400018 EN1Q05925 392 aaPredicted RBP14.65□□□□□ -0.06
SKA3-203ENST00000400018 GCKRQ14397 625 aa14.65□□□□□ -0.06
SKA3-203ENST00000400018 SLC51AQ86UW1 340 aa14.65□□□□□ -0.06
SKA3-203ENST00000400018 PLBD2Q8NHP8 589 aa14.65□□□□□ -0.06
SKA3-203ENST00000400018 GNAI2P04899 355 aa14.65□□□□□ -0.07
SKA3-203ENST00000400018 PDE4AP27815 886 aa14.65□□□□□ -0.07
SKA3-203ENST00000400018 SBF2Q86WG5 1849 aa14.64□□□□□ -0.07
SKA3-203ENST00000400018 CENPQQ7L2Z9 268 aaPredicted RBP14.64□□□□□ -0.07
SKA3-203ENST00000400018 NPM2Q86SE8 214 aaKnown RBP14.64□□□□□ -0.07
SKA3-203ENST00000400018 VSIG10Q8N0Z9 540 aa14.64□□□□□ -0.07
SKA3-203ENST00000400018 BCL11BQ9C0K0 894 aaPredicted RBP14.64□□□□□ -0.07
SKA3-203ENST00000400018 IL1RAPL2Q9NP60 686 aa14.64□□□□□ -0.07
SKA3-203ENST00000400018 GRM8O00222 908 aa14.64□□□□□ -0.07
SKA3-203ENST00000400018 SRGAP3O43295 1099 aa14.64□□□□□ -0.07
SKA3-203ENST00000400018 NEXNQ0ZGT2 675 aa14.64□□□□□ -0.07
SKA3-203ENST00000400018 LINS1Q8NG48 757 aa14.64□□□□□ -0.07
SKA3-203ENST00000400018 RWDD1Q9H446 243 aaPredicted RBP14.64□□□□□ -0.07
SKA3-203ENST00000400018 UBN2Q6ZU65 1347 aa14.63□□□□□ -0.07
SKA3-203ENST00000400018 EIF5P55010 431 aaKnown RBP14.63□□□□□ -0.07
SKA3-203ENST00000400018 USPL1Q5W0Q7 1092 aa14.63□□□□□ -0.07
SKA3-203ENST00000400018 PDGFDQ9GZP0 370 aaPredicted RBP14.63□□□□□ -0.07
SKA3-203ENST00000400018 PLEKHG2Q9H7P9 1386 aa14.63□□□□□ -0.07
SKA3-203ENST00000400018 KIF6Q6ZMV9 814 aa14.63□□□□□ -0.07
SKA3-203ENST00000400018 ZNF594Q96JF6 807 aaPredicted RBP14.63□□□□□ -0.07
SKA3-203ENST00000400018 SOS1Q07889 1333 aaPredicted RBP14.62□□□□□ -0.07
SKA3-203ENST00000400018 HCLS1P14317 486 aaPredicted RBP14.62□□□□□ -0.07
SKA3-203ENST00000400018 TXNRD1Q16881 649 aa14.62□□□□□ -0.07
SKA3-203ENST00000400018 ANKRD44Q8N8A2 993 aa14.62□□□□□ -0.07
SKA3-203ENST00000400018 LAMB4A4D0S4 1761 aa14.61□□□□□ -0.07
SKA3-203ENST00000400018 EZH2Q15910 746 aaKnown RBP14.61□□□□□ -0.07
SKA3-203ENST00000400018 SMARCC1Q92922 1105 aaPredicted RBP14.61□□□□□ -0.07
SKA3-203ENST00000400018 MAP3K15Q6ZN16 1313 aa14.61□□□□□ -0.07
SKA3-203ENST00000400018 ZNF827Q17R98 1081 aa14.61□□□□□ -0.07
SKA3-203ENST00000400018 TEX13AQ9BXU3 409 aaPredicted RBP14.61□□□□□ -0.07
SKA3-203ENST00000400018 CACNA1FO60840 1977 aa14.61□□□□□ -0.07
SKA3-203ENST00000400018 ARFGEF2Q9Y6D5 1785 aa14.6□□□□□ -0.07
SKA3-203ENST00000400018 ARHGEF1Q92888 912 aaKnown RBP14.6□□□□□ -0.07
SKA3-203ENST00000400018 TCIRG1Q13488 830 aa14.6□□□□□ -0.07
SKA3-203ENST00000400018 COL15A1P39059 1388 aa14.6□□□□□ -0.07
SKA3-203ENST00000400018 CAMTA2O94983 1202 aa14.59□□□□□ -0.07
SKA3-203ENST00000400018 SUSD4Q5VX71 490 aa14.59□□□□□ -0.07
SKA3-203ENST00000400018 MSL1Q68DK7 614 aa14.59□□□□□ -0.07
SKA3-203ENST00000400018 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP14.59□□□□□ -0.07
SKA3-203ENST00000400018 SURF6O75683 361 aaKnown RBP14.59□□□□□ -0.07
SKA3-203ENST00000400018 GNAI3P08754 354 aa14.59□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms