RNA–Protein interactions for RNA: ENST00000397906.6

TTC28-201, Transcript of tetratricopeptide repeat domain 28, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene TTC28, Length 11,795 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-201ENST00000397906 KAT14Q9H8E8 782 aa13.22□□□□□ -0.29
TTC28-201ENST00000397906 PLCD3Q8N3E9 789 aa13.22□□□□□ -0.29
TTC28-201ENST00000397906 LMTK3Q96Q04 1460 aa13.22□□□□□ -0.29
TTC28-201ENST00000397906 PDE4BQ07343 736 aa13.22□□□□□ -0.29
TTC28-201ENST00000397906 PLS1Q14651 629 aa13.22□□□□□ -0.29
TTC28-201ENST00000397906 TMEM266Q2M3C6 531 aa13.22□□□□□ -0.29
TTC28-201ENST00000397906 DNA2P51530 1060 aa13.21□□□□□ -0.29
TTC28-201ENST00000397906 CCDC150Q8NCX0 1101 aa13.21□□□□□ -0.29
TTC28-201ENST00000397906 OGFOD1Q8N543 542 aa13.21□□□□□ -0.29
TTC28-201ENST00000397906 LRRC59Q96AG4 307 aaKnown RBP13.21□□□□□ -0.29
TTC28-201ENST00000397906 WDR70Q9NW82 654 aa13.21□□□□□ -0.29
TTC28-201ENST00000397906 STX8Q9UNK0 236 aa13.21□□□□□ -0.29
TTC28-201ENST00000397906 FILIP1Q7Z7B0 1213 aa13.21□□□□□ -0.3
TTC28-201ENST00000397906 SKAP1Q86WV1 359 aa13.21□□□□□ -0.3
TTC28-201ENST00000397906 TTF1Q15361 905 aaPredicted RBP13.21□□□□□ -0.3
TTC28-201ENST00000397906 ZNF397Q8NF99 534 aaPredicted RBP13.21□□□□□ -0.3
TTC28-201ENST00000397906 TSG101Q99816 390 aa13.21□□□□□ -0.3
TTC28-201ENST00000397906 MICU3Q86XE3 530 aa13.21□□□□□ -0.3
TTC28-201ENST00000397906 NPHP3Q7Z494 1330 aa13.21□□□□□ -0.3
TTC28-201ENST00000397906 CFAP100Q494V2 611 aa13.2□□□□□ -0.3
TTC28-201ENST00000397906 C20orf194Q5TEA3 1177 aa13.2□□□□□ -0.3
TTC28-201ENST00000397906 NIP7Q9Y221 180 aaKnown RBP eCLIP13.2□□□□□ -0.3
TTC28-201ENST00000397906 RIMBP2O15034 1052 aa13.2□□□□□ -0.3
TTC28-201ENST00000397906 TNNT1P13805 278 aa13.2□□□□□ -0.3
TTC28-201ENST00000397906 RARSP54136 660 aaKnown RBP13.2□□□□□ -0.3
TTC28-201ENST00000397906 SPTY2D1Q68D10 685 aaPredicted RBP13.2□□□□□ -0.3
TTC28-201ENST00000397906 TXLNBQ8N3L3 684 aa13.2□□□□□ -0.3
TTC28-201ENST00000397906 TMEM67Q5HYA8 995 aa13.2□□□□□ -0.3
TTC28-201ENST00000397906 ANKRD18AQ8IVF6 992 aa13.2□□□□□ -0.3
TTC28-201ENST00000397906 ANKRD13DQ6ZTN6 518 aa13.2□□□□□ -0.3
TTC28-201ENST00000397906 DNAI2Q9GZS0 605 aa13.2□□□□□ -0.3
TTC28-201ENST00000397906 PPIP5K1Q6PFW1 1433 aa13.2□□□□□ -0.3
TTC28-201ENST00000397906 POLD1P28340 1107 aa13.2□□□□□ -0.3
TTC28-201ENST00000397906 MFSD6Q6ZSS7 791 aa13.2□□□□□ -0.3
TTC28-201ENST00000397906 SIRT1Q96EB6 747 aa13.2□□□□□ -0.3
TTC28-201ENST00000397906 PARP3Q9Y6F1 533 aa13.2□□□□□ -0.3
TTC28-201ENST00000397906 MACROD2A1Z1Q3 448 aa13.19□□□□□ -0.3
TTC28-201ENST00000397906 BAG4O95429 457 aaKnown RBP13.19□□□□□ -0.3
TTC28-201ENST00000397906 ALDH1L2Q3SY69 923 aa13.19□□□□□ -0.3
TTC28-201ENST00000397906 MBIPQ9NS73 344 aa13.19□□□□□ -0.3
TTC28-201ENST00000397906 NKTRP30414 1462 aaKnown RBP13.19□□□□□ -0.3
TTC28-201ENST00000397906 JAG2Q9Y219 1238 aa13.19□□□□□ -0.3
TTC28-201ENST00000397906 MMRN2Q9H8L6 949 aa13.19□□□□□ -0.3
TTC28-201ENST00000397906 KDM5BQ9UGL1 1544 aa13.19□□□□□ -0.3
TTC28-201ENST00000397906 ZRSR2Q15696 482 aaKnown RBP13.19□□□□□ -0.3
TTC28-201ENST00000397906 TAF3Q5VWG9 929 aa13.19□□□□□ -0.3
TTC28-201ENST00000397906 ANAPC15P60006 121 aa13.19□□□□□ -0.3
TTC28-201ENST00000397906 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.19□□□□□ -0.3
TTC28-201ENST00000397906 TSPY3P0CV98 308 aa13.19□□□□□ -0.3
TTC28-201ENST00000397906 TSPY8P0CW00 308 aa13.19□□□□□ -0.3
TTC28-201ENST00000397906 EPB41L2O43491 1005 aaKnown RBP13.18□□□□□ -0.3
TTC28-201ENST00000397906 HDAC9Q9UKV0 1011 aa13.18□□□□□ -0.3
TTC28-201ENST00000397906 RAB34Q9BZG1 259 aa13.18□□□□□ -0.3
TTC28-201ENST00000397906 CRNKL1Q9BZJ0 848 aaKnown RBP13.18□□□□□ -0.3
TTC28-201ENST00000397906 CACNA2D4Q7Z3S7 1137 aa13.18□□□□□ -0.3
TTC28-201ENST00000397906 CKAP2LQ8IYA6 745 aa13.18□□□□□ -0.3
TTC28-201ENST00000397906 THOC2Q8NI27 1593 aaKnown RBP13.18□□□□□ -0.3
TTC28-201ENST00000397906 ASXL2Q76L83 1435 aa13.18□□□□□ -0.3
TTC28-201ENST00000397906 GBP2P32456 591 aaPredicted RBP13.18□□□□□ -0.3
TTC28-201ENST00000397906 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP13.18□□□□□ -0.3
TTC28-201ENST00000397906 LDHCP07864 332 aa13.18□□□□□ -0.3
TTC28-201ENST00000397906 DISP3Q9P2K9 1392 aa13.18□□□□□ -0.3
TTC28-201ENST00000397906 NCOA1Q15788 1441 aa13.18□□□□□ -0.3
TTC28-201ENST00000397906 JAKMIP3Q5VZ66 844 aa13.17□□□□□ -0.3
TTC28-201ENST00000397906 URB2Q14146 1524 aaKnown RBP13.17□□□□□ -0.3
TTC28-201ENST00000397906 GSTO1P78417 241 aa13.17□□□□□ -0.3
TTC28-201ENST00000397906 PSMD1Q99460 953 aa13.17□□□□□ -0.3
TTC28-201ENST00000397906 WDR7Q9Y4E6 1490 aa13.17□□□□□ -0.3
TTC28-201ENST00000397906 TRIM27P14373 513 aa13.17□□□□□ -0.3
TTC28-201ENST00000397906 BICD1Q96G01 975 aa13.17□□□□□ -0.3
TTC28-201ENST00000397906 PUF60Q9UHX1 559 aaKnown RBP13.17□□□□□ -0.3
TTC28-201ENST00000397906 PANK2Q9BZ23 570 aa13.17□□□□□ -0.3
TTC28-201ENST00000397906 SCAF11Q99590 1463 aaKnown RBP13.17□□□□□ -0.3
TTC28-201ENST00000397906 TSPYL1Q9H0U9 437 aa13.17□□□□□ -0.3
TTC28-201ENST00000397906 SYCP3Q8IZU3 236 aa13.17□□□□□ -0.3
TTC28-201ENST00000397906 TCERG1LQ5VWI1 586 aa13.17□□□□□ -0.3
TTC28-201ENST00000397906 XAGE3Q8WTP9 111 aa13.17□□□□□ -0.3
TTC28-201ENST00000397906 TAF4BQ92750 862 aa13.17□□□□□ -0.3
TTC28-201ENST00000397906 USP8P40818 1118 aa13.16□□□□□ -0.3
TTC28-201ENST00000397906 NLRP3Q96P20 1036 aa13.16□□□□□ -0.3
TTC28-201ENST00000397906 TEX14Q8IWB6 1497 aa13.16□□□□□ -0.3
TTC28-201ENST00000397906 PTPRCP08575 1304 aa13.16□□□□□ -0.3
TTC28-201ENST00000397906 SMTNL1A8MU46 457 aa13.16□□□□□ -0.3
TTC28-201ENST00000397906 RTCBQ9Y3I0 505 aaKnown RBP13.16□□□□□ -0.3
TTC28-201ENST00000397906 SYCE3A1L190 88 aa13.16□□□□□ -0.3
TTC28-201ENST00000397906 DZIP3Q86Y13 1208 aaKnown RBP13.16□□□□□ -0.3
TTC28-201ENST00000397906 CYP7A1P22680 504 aa13.16□□□□□ -0.3
TTC28-201ENST00000397906 CTNNBL1Q8WYA6 563 aaPredicted RBP13.16□□□□□ -0.3
TTC28-201ENST00000397906 TMX1Q9H3N1 280 aa13.16□□□□□ -0.3
TTC28-201ENST00000397906 DHX29Q7Z478 1369 aaKnown RBP13.16□□□□□ -0.3
TTC28-201ENST00000397906 NBPF14Q5TI25 921 aa13.16□□□□□ -0.3
TTC28-201ENST00000397906 PRKCSHP14314 528 aaPredicted RBP13.16□□□□□ -0.3
TTC28-201ENST00000397906 FKBP15Q5T1M5 1219 aa13.16□□□□□ -0.3
TTC28-201ENST00000397906 ZNF804AQ7Z570 1209 aa13.16□□□□□ -0.3
TTC28-201ENST00000397906 EVI5LQ96CN4 794 aa13.16□□□□□ -0.3
TTC28-201ENST00000397906 PIK3R4Q99570 1358 aa13.16□□□□□ -0.3
TTC28-201ENST00000397906 HMGB1P09429 215 aaKnown RBP13.16□□□□□ -0.3
TTC28-201ENST00000397906 COPS6Q7L5N1 327 aa13.16□□□□□ -0.3
TTC28-201ENST00000397906 SLC26A6Q9BXS9 759 aa13.16□□□□□ -0.3
TTC28-201ENST00000397906 C11orf95C9JLR9 678 aaPredicted RBP13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms