RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 CHD1LQ86WJ1 897 aa8.3□□□□□ -1.08
UPF2-203ENST00000397053 NOD1Q9Y239 953 aa8.3□□□□□ -1.08
UPF2-203ENST00000397053 GAPVD1Q14C86 1478 aa8.3□□□□□ -1.08
UPF2-203ENST00000397053 NDC80O14777 642 aa8.3□□□□□ -1.08
UPF2-203ENST00000397053 SSRP1Q08945 709 aaKnown RBP8.3□□□□□ -1.08
UPF2-203ENST00000397053 PLS1Q14651 629 aa8.3□□□□□ -1.08
UPF2-203ENST00000397053 MAP3K11Q16584 847 aa8.3□□□□□ -1.08
UPF2-203ENST00000397053 KIF4BQ2VIQ3 1234 aa8.3□□□□□ -1.08
UPF2-203ENST00000397053 MCM10Q7L590 875 aa8.3□□□□□ -1.08
UPF2-203ENST00000397053 CCDC8Q9H0W5 538 aaPredicted RBP8.3□□□□□ -1.08
UPF2-203ENST00000397053 VEZTQ9HBM0 779 aa8.3□□□□□ -1.08
UPF2-203ENST00000397053 IKBKGQ9Y6K9 419 aa8.3□□□□□ -1.08
UPF2-203ENST00000397053 F8W031 263 aaPredicted RBP8.3□□□□□ -1.08
UPF2-203ENST00000397053 HMGB1P09429 215 aaKnown RBP8.3□□□□□ -1.08
UPF2-203ENST00000397053 GIGYF2Q6Y7W6 1299 aaKnown RBP8.3□□□□□ -1.08
UPF2-203ENST00000397053 PPP1R14CQ8TAE6 165 aa8.3□□□□□ -1.08
UPF2-203ENST00000397053 ERMNQ8TAM6 284 aa8.3□□□□□ -1.08
UPF2-203ENST00000397053 KIF4AO95239 1232 aa8.3□□□□□ -1.08
UPF2-203ENST00000397053 PRKCSHP14314 528 aaPredicted RBP8.3□□□□□ -1.08
UPF2-203ENST00000397053 OTUD6BQ8N6M0 293 aa8.3□□□□□ -1.08
UPF2-203ENST00000397053 PUS7Q96PZ0 661 aaKnown RBP8.3□□□□□ -1.08
UPF2-203ENST00000397053 DBF4Q9UBU7 674 aaPredicted RBP8.3□□□□□ -1.08
UPF2-203ENST00000397053 ANKRD30BQ9BXX2 1392 aa8.29□□□□□ -1.08
UPF2-203ENST00000397053 RAB11FIP3O75154 756 aa8.29□□□□□ -1.08
UPF2-203ENST00000397053 SLU7O95391 586 aaKnown RBP8.29□□□□□ -1.08
UPF2-203ENST00000397053 NBPF7P0C2Y1 421 aaPredicted RBP8.29□□□□□ -1.08
UPF2-203ENST00000397053 GSTO1P78417 241 aa8.29□□□□□ -1.08
UPF2-203ENST00000397053 GUCY1B3Q02153 619 aa8.29□□□□□ -1.08
UPF2-203ENST00000397053 SLC4A8Q2Y0W8 1093 aa8.29□□□□□ -1.08
UPF2-203ENST00000397053 IMPG2Q9BZV3 1241 aa8.29□□□□□ -1.08
UPF2-203ENST00000397053 SNRKQ9NRH2 765 aa8.29□□□□□ -1.08
UPF2-203ENST00000397053 LRPPRCP42704 1394 aaKnown RBP8.29□□□□□ -1.08
UPF2-203ENST00000397053 BIRC2Q13490 618 aa8.29□□□□□ -1.08
UPF2-203ENST00000397053 HLTFQ14527 1009 aaKnown RBP eCLIP8.29□□□□□ -1.08
UPF2-203ENST00000397053 TTF1Q15361 905 aaPredicted RBP8.29□□□□□ -1.08
UPF2-203ENST00000397053 CCDC83Q8IWF9 413 aa8.29□□□□□ -1.08
UPF2-203ENST00000397053 NLRP3Q96P20 1036 aa8.29□□□□□ -1.08
UPF2-203ENST00000397053 SETDB2Q96T68 719 aa8.29□□□□□ -1.08
UPF2-203ENST00000397053 CRNKL1Q9BZJ0 848 aaKnown RBP8.29□□□□□ -1.08
UPF2-203ENST00000397053 ZC3H12CQ9C0D7 883 aaKnown RBP8.29□□□□□ -1.08
UPF2-203ENST00000397053 RPGRIP1LQ68CZ1 1315 aa8.29□□□□□ -1.08
UPF2-203ENST00000397053 KIF5CO60282 957 aa8.29□□□□□ -1.08
UPF2-203ENST00000397053 MVPQ14764 893 aaKnown RBP8.29□□□□□ -1.08
UPF2-203ENST00000397053 PPP4R3BQ5MIZ7 849 aa8.29□□□□□ -1.08
UPF2-203ENST00000397053 KRT28Q7Z3Y7 464 aa8.29□□□□□ -1.08
UPF2-203ENST00000397053 IFNL2Q8IZJ0 200 aa8.29□□□□□ -1.08
UPF2-203ENST00000397053 HYPKQ9NX55 129 aa8.29□□□□□ -1.08
UPF2-203ENST00000397053 TFCP2L1Q9NZI6 479 aa8.29□□□□□ -1.08
UPF2-203ENST00000397053 MX1P20591 662 aa8.29□□□□□ -1.08
UPF2-203ENST00000397053 DNAAF4Q8WXU2 420 aa8.29□□□□□ -1.08
UPF2-203ENST00000397053 ZMYND15Q9H091 742 aa8.29□□□□□ -1.08
UPF2-203ENST00000397053 YEATS4O95619 227 aa8.28□□□□□ -1.08
UPF2-203ENST00000397053 IARSP41252 1262 aaKnown RBP8.28□□□□□ -1.08
UPF2-203ENST00000397053 CBX1P83916 185 aa8.28□□□□□ -1.08
UPF2-203ENST00000397053 CNNM3Q8NE01 707 aa8.28□□□□□ -1.08
UPF2-203ENST00000397053 C8orf37Q96NL8 207 aa8.28□□□□□ -1.08
UPF2-203ENST00000397053 NUP88Q99567 741 aaPredicted RBP8.28□□□□□ -1.08
UPF2-203ENST00000397053 ZSCAN12O43309 604 aa8.28□□□□□ -1.08
UPF2-203ENST00000397053 TMCO3Q6UWJ1 677 aa8.28□□□□□ -1.08
UPF2-203ENST00000397053 SCAND2PQ9GZW5 306 aaPredicted RBP8.28□□□□□ -1.08
UPF2-203ENST00000397053 ANO10Q9NW15 660 aa8.28□□□□□ -1.08
UPF2-203ENST00000397053 AMOTL2Q9Y2J4 779 aa8.28□□□□□ -1.08
UPF2-203ENST00000397053 TOP1P11387 765 aaKnown RBP8.28□□□□□ -1.08
UPF2-203ENST00000397053 CPLX3Q8WVH0 158 aa8.28□□□□□ -1.08
UPF2-203ENST00000397053 PLVAPQ9BX97 442 aa8.28□□□□□ -1.08
UPF2-203ENST00000397053 LRRC27Q9C0I9 530 aa8.28□□□□□ -1.08
UPF2-203ENST00000397053 MAP9Q49MG5 647 aa8.28□□□□□ -1.08
UPF2-203ENST00000397053 TMEM67Q5HYA8 995 aa8.28□□□□□ -1.08
UPF2-203ENST00000397053 THUMPD2Q9BTF0 503 aaKnown RBP8.28□□□□□ -1.08
UPF2-203ENST00000397053 CCDC175P0C221 793 aa8.27□□□□□ -1.08
UPF2-203ENST00000397053 CCDC152Q4G0S7 254 aa8.27□□□□□ -1.08
UPF2-203ENST00000397053 WAPLQ7Z5K2 1190 aa8.27□□□□□ -1.08
UPF2-203ENST00000397053 SPAG5Q96R06 1193 aa8.27□□□□□ -1.08
UPF2-203ENST00000397053 MMRN2Q9H8L6 949 aa8.27□□□□□ -1.08
UPF2-203ENST00000397053 CCDC172P0C7W6 258 aa8.27□□□□□ -1.09
UPF2-203ENST00000397053 MFSD6Q6ZSS7 791 aa8.27□□□□□ -1.09
UPF2-203ENST00000397053 SREK1Q8WXA9 508 aaKnown RBP8.27□□□□□ -1.09
UPF2-203ENST00000397053 NAA15Q9BXJ9 866 aaKnown RBP8.27□□□□□ -1.09
UPF2-203ENST00000397053 BCCIPQ9P287 314 aaKnown RBP eCLIP8.27□□□□□ -1.09
UPF2-203ENST00000397053 CHRNA2Q15822 529 aa8.27□□□□□ -1.09
UPF2-203ENST00000397053 MICU3Q86XE3 530 aa8.27□□□□□ -1.09
UPF2-203ENST00000397053 CWC25Q9NXE8 425 aaPredicted RBP8.27□□□□□ -1.09
UPF2-203ENST00000397053 ATP5J2-PTCD1G3V325 749 aa8.27□□□□□ -1.09
UPF2-203ENST00000397053 ZBTB24O43167 697 aaPredicted RBP8.27□□□□□ -1.09
UPF2-203ENST00000397053 CAMK4Q16566 473 aa8.27□□□□□ -1.09
UPF2-203ENST00000397053 SMARCC1Q92922 1105 aaPredicted RBP8.27□□□□□ -1.09
UPF2-203ENST00000397053 ZNF408Q9H9D4 720 aa8.27□□□□□ -1.09
UPF2-203ENST00000397053 KRT13P13646 458 aa8.26□□□□□ -1.09
UPF2-203ENST00000397053 BRDTQ58F21 947 aaPredicted RBP8.26□□□□□ -1.09
UPF2-203ENST00000397053 UBE3BQ7Z3V4 1068 aa8.26□□□□□ -1.09
UPF2-203ENST00000397053 HFM1A2PYH4 1435 aa8.26□□□□□ -1.09
UPF2-203ENST00000397053 PRG4Q92954 1404 aaPredicted RBP8.26□□□□□ -1.09
UPF2-203ENST00000397053 GOLIM4O00461 696 aa8.26□□□□□ -1.09
UPF2-203ENST00000397053 ZGPATQ8N5A5 531 aaKnown RBP8.26□□□□□ -1.09
UPF2-203ENST00000397053 ALS2CR12Q96Q35 445 aa8.26□□□□□ -1.09
UPF2-203ENST00000397053 PANK2Q9BZ23 570 aa8.26□□□□□ -1.09
UPF2-203ENST00000397053 C6orf50Q9HD87 102 aa8.26□□□□□ -1.09
UPF2-203ENST00000397053 USP16Q9Y5T5 823 aa8.26□□□□□ -1.09
UPF2-203ENST00000397053 PARP3Q9Y6F1 533 aa8.26□□□□□ -1.09
UPF2-203ENST00000397053 SYNJ2O15056 1496 aa8.26□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms