RNA–Protein interactions for RNA: ENST00000389195.6

LTN1-203, Transcript of listerin E3 ubiquitin protein ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LTN1, Length 2,714 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LTN1-203ENST00000389195 C8orf37Q96NL8 207 aa12.54□□□□□ -0.4
LTN1-203ENST00000389195 CCDC8Q9H0W5 538 aaPredicted RBP12.54□□□□□ -0.4
LTN1-203ENST00000389195 KIF2CQ99661 725 aa12.53□□□□□ -0.4
LTN1-203ENST00000389195 A0A087WZG4 1122 aa12.53□□□□□ -0.4
LTN1-203ENST00000389195 GCKRQ14397 625 aa12.53□□□□□ -0.4
LTN1-203ENST00000389195 LINS1Q8NG48 757 aa12.53□□□□□ -0.4
LTN1-203ENST00000389195 TLR7Q9NYK1 1049 aaKnown RBP12.53□□□□□ -0.4
LTN1-203ENST00000389195 IBTKQ9P2D0 1353 aaPredicted RBP12.53□□□□□ -0.4
LTN1-203ENST00000389195 SIPA1L3O60292 1781 aaPredicted RBP12.53□□□□□ -0.4
LTN1-203ENST00000389195 KCNQ2O43526 872 aa12.53□□□□□ -0.4
LTN1-203ENST00000389195 HSP90AB1P08238 724 aaKnown RBP12.53□□□□□ -0.4
LTN1-203ENST00000389195 ATG3Q9NT62 314 aa12.53□□□□□ -0.4
LTN1-203ENST00000389195 FAM177BA6PVY3 158 aa12.52□□□□□ -0.41
LTN1-203ENST00000389195 CDC45O75419 566 aa12.52□□□□□ -0.41
LTN1-203ENST00000389195 DDX58O95786 925 aaKnown RBP12.52□□□□□ -0.41
LTN1-203ENST00000389195 CHGBP05060 677 aa12.52□□□□□ -0.41
LTN1-203ENST00000389195 EXOC5O00471 708 aa12.52□□□□□ -0.41
LTN1-203ENST00000389195 GPTP24298 496 aa12.52□□□□□ -0.41
LTN1-203ENST00000389195 METTL22Q9BUU2 404 aaPredicted RBP12.52□□□□□ -0.41
LTN1-203ENST00000389195 FRAT2O75474 233 aaPredicted RBP12.51□□□□□ -0.41
LTN1-203ENST00000389195 NEXNQ0ZGT2 675 aa12.51□□□□□ -0.41
LTN1-203ENST00000389195 POLA2Q14181 598 aa12.51□□□□□ -0.41
LTN1-203ENST00000389195 FAM98CQ17RN3 349 aaKnown RBP12.51□□□□□ -0.41
LTN1-203ENST00000389195 EDC3Q96F86 508 aaKnown RBP12.51□□□□□ -0.41
LTN1-203ENST00000389195 ZNF594Q96JF6 807 aaPredicted RBP12.51□□□□□ -0.41
LTN1-203ENST00000389195 CACNA1FO60840 1977 aa12.51□□□□□ -0.41
LTN1-203ENST00000389195 SASH1O94885 1247 aa12.5□□□□□ -0.41
LTN1-203ENST00000389195 NOL8Q76FK4 1167 aaKnown RBP12.5□□□□□ -0.41
LTN1-203ENST00000389195 TBC1D2BQ9UPU7 963 aa12.5□□□□□ -0.41
LTN1-203ENST00000389195 ABCA3Q99758 1704 aa12.5□□□□□ -0.41
LTN1-203ENST00000389195 ERVV-2B6SEH9 535 aa12.5□□□□□ -0.41
LTN1-203ENST00000389195 HLFQ16534 295 aa12.49□□□□□ -0.41
LTN1-203ENST00000389195 SALL3Q9BXA9 1300 aa12.49□□□□□ -0.41
LTN1-203ENST00000389195 AACSQ86V21 672 aa12.49□□□□□ -0.41
LTN1-203ENST00000389195 FAM89AQ96GI7 184 aa12.49□□□□□ -0.41
LTN1-203ENST00000389195 NHSL1Q5SYE7 1610 aa12.49□□□□□ -0.41
LTN1-203ENST00000389195 NKX1-1Q15270 411 aaPredicted RBP12.48□□□□□ -0.41
LTN1-203ENST00000389195 NFKBIBQ15653 356 aa12.48□□□□□ -0.41
LTN1-203ENST00000389195 LMBR1LQ6UX01 489 aa12.48□□□□□ -0.41
LTN1-203ENST00000389195 EAF2Q96CJ1 260 aaPredicted RBP12.48□□□□□ -0.41
LTN1-203ENST00000389195 NGLY1Q96IV0 654 aa12.48□□□□□ -0.41
LTN1-203ENST00000389195 LARP6Q9BRS8 491 aaKnown RBP12.48□□□□□ -0.41
LTN1-203ENST00000389195 ALDH1L1O75891 902 aa12.48□□□□□ -0.41
LTN1-203ENST00000389195 MARCH10Q8NA82 808 aaPredicted RBP12.48□□□□□ -0.41
LTN1-203ENST00000389195 SLFNL1Q499Z3 407 aa12.47□□□□□ -0.41
LTN1-203ENST00000389195 ZBTB1Q9Y2K1 713 aa12.47□□□□□ -0.41
LTN1-203ENST00000389195 DDB1Q16531 1140 aa12.47□□□□□ -0.41
LTN1-203ENST00000389195 USP26Q9BXU7 913 aa12.47□□□□□ -0.41
LTN1-203ENST00000389195 PALD1Q9ULE6 856 aa12.47□□□□□ -0.41
LTN1-203ENST00000389195 LTBP4Q8N2S1 1624 aa12.47□□□□□ -0.41
LTN1-203ENST00000389195 CWC27Q6UX04 472 aaKnown RBP12.46□□□□□ -0.41
LTN1-203ENST00000389195 PI4K2BQ8TCG2 481 aa12.46□□□□□ -0.41
LTN1-203ENST00000389195 BOLA2Q9H3K6 86 aa12.46□□□□□ -0.41
LTN1-203ENST00000389195 ANO2Q9NQ90 1003 aa12.46□□□□□ -0.41
LTN1-203ENST00000389195 PKD1L3Q7Z443 1732 aa12.46□□□□□ -0.41
LTN1-203ENST00000389195 ADAMTS7Q9UKP4 1686 aa12.46□□□□□ -0.41
LTN1-203ENST00000389195 PLBD2Q8NHP8 589 aa12.46□□□□□ -0.41
LTN1-203ENST00000389195 KIF1BPQ96EK5 621 aa12.46□□□□□ -0.41
LTN1-203ENST00000389195 TOM1O60784 492 aa12.46□□□□□ -0.42
LTN1-203ENST00000389195 SHANK3Q9BYB0 1731 aa12.45□□□□□ -0.42
LTN1-203ENST00000389195 RBM25P49756 843 aaKnown RBP12.45□□□□□ -0.42
LTN1-203ENST00000389195 TFCP2Q12800 502 aa12.45□□□□□ -0.42
LTN1-203ENST00000389195 G3BP1Q13283 466 aaKnown RBP eCLIP12.45□□□□□ -0.42
LTN1-203ENST00000389195 BECN1Q14457 450 aa12.45□□□□□ -0.42
LTN1-203ENST00000389195 PUS3Q9BZE2 481 aaKnown RBP12.45□□□□□ -0.42
LTN1-203ENST00000389195 TOGARAM1Q9Y4F4 1720 aa12.45□□□□□ -0.42
LTN1-203ENST00000389195 CHMLP26374 656 aa12.45□□□□□ -0.42
LTN1-203ENST00000389195 PXDNLA1KZ92 1463 aa12.44□□□□□ -0.42
LTN1-203ENST00000389195 IFIT2P09913 472 aaKnown RBP12.44□□□□□ -0.42
LTN1-203ENST00000389195 TIMM10P62072 90 aa12.44□□□□□ -0.42
LTN1-203ENST00000389195 LRRC24Q50LG9 513 aa12.44□□□□□ -0.42
LTN1-203ENST00000389195 CLASRPQ8N2M8 674 aaKnown RBP12.44□□□□□ -0.42
LTN1-203ENST00000389195 SPATA31A1Q5TZJ5 1347 aa12.44□□□□□ -0.42
LTN1-203ENST00000389195 KCPQ6ZWJ8 1503 aa12.44□□□□□ -0.42
LTN1-203ENST00000389195 PTPN12Q05209 780 aaKnown RBP12.44□□□□□ -0.42
LTN1-203ENST00000389195 COL9A3Q14050 684 aaPredicted RBP12.44□□□□□ -0.42
LTN1-203ENST00000389195 COL16A1Q07092 1604 aaPredicted RBP12.43□□□□□ -0.42
LTN1-203ENST00000389195 UPF3BQ9BZI7 483 aaKnown RBP12.43□□□□□ -0.42
LTN1-203ENST00000389195 OSBPL3Q9H4L5 887 aa12.43□□□□□ -0.42
LTN1-203ENST00000389195 MRC1P22897 1456 aa12.43□□□□□ -0.42
LTN1-203ENST00000389195 GLI3P10071 1580 aa12.43□□□□□ -0.42
LTN1-203ENST00000389195 CPA1P15085 419 aa12.43□□□□□ -0.42
LTN1-203ENST00000389195 CASP7P55210 303 aa12.42□□□□□ -0.42
LTN1-203ENST00000389195 FOXO4P98177 505 aa12.42□□□□□ -0.42
LTN1-203ENST00000389195 CHAMP1Q96JM3 812 aa12.42□□□□□ -0.42
LTN1-203ENST00000389195 NEUROD6Q96NK8 337 aa12.42□□□□□ -0.42
LTN1-203ENST00000389195 ESYT1Q9BSJ8 1104 aa12.42□□□□□ -0.42
LTN1-203ENST00000389195 CHMP4AQ9BY43 222 aa12.42□□□□□ -0.42
LTN1-203ENST00000389195 ANTXR1Q9H6X2 564 aa12.42□□□□□ -0.42
LTN1-203ENST00000389195 PARP4Q9UKK3 1724 aaKnown RBP12.42□□□□□ -0.42
LTN1-203ENST00000389195 ERC2O15083 957 aa12.42□□□□□ -0.42
LTN1-203ENST00000389195 RAB11FIP3O75154 756 aa12.42□□□□□ -0.42
LTN1-203ENST00000389195 ATP6V1AP38606 617 aa12.42□□□□□ -0.42
LTN1-203ENST00000389195 HSCBQ8IWL3 235 aa12.42□□□□□ -0.42
LTN1-203ENST00000389195 CWC25Q9NXE8 425 aaPredicted RBP12.42□□□□□ -0.42
LTN1-203ENST00000389195 SNAP23O00161 211 aa12.41□□□□□ -0.42
LTN1-203ENST00000389195 CYP19A1P11511 503 aaPredicted RBP12.41□□□□□ -0.42
LTN1-203ENST00000389195 RFX5P48382 616 aaPredicted RBP12.41□□□□□ -0.42
LTN1-203ENST00000389195 MTX1Q13505 466 aa12.41□□□□□ -0.42
LTN1-203ENST00000389195 FAM227BQ96M60 508 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms