RNA–Protein interactions for RNA: ENST00000379433.5

NEDD9-201, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 1 (best) BASIC

Gene NEDD9, Length 3,341 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-201ENST00000379433 ZCRB1Q8TBF4 217 aaKnown RBP13.21□□□□□ -0.29
NEDD9-201ENST00000379433 MEGF6O75095 1541 aa13.2□□□□□ -0.3
NEDD9-201ENST00000379433 APPP05067 770 aa13.2□□□□□ -0.3
NEDD9-201ENST00000379433 UBE3BQ7Z3V4 1068 aa13.2□□□□□ -0.3
NEDD9-201ENST00000379433 NEXNQ0ZGT2 675 aa13.19□□□□□ -0.3
NEDD9-201ENST00000379433 KSR2Q6VAB6 950 aa13.19□□□□□ -0.3
NEDD9-201ENST00000379433 LARP6Q9BRS8 491 aaKnown RBP13.19□□□□□ -0.3
NEDD9-201ENST00000379433 CCDC8Q9H0W5 538 aaPredicted RBP13.19□□□□□ -0.3
NEDD9-201ENST00000379433 RGPD5Q99666 1765 aa13.19□□□□□ -0.3
NEDD9-201ENST00000379433 ZNF142P52746 1687 aaPredicted RBP13.19□□□□□ -0.3
NEDD9-201ENST00000379433 DDX58O95786 925 aaKnown RBP13.19□□□□□ -0.3
NEDD9-201ENST00000379433 MAPK8IP2Q13387 824 aaPredicted RBP13.19□□□□□ -0.3
NEDD9-201ENST00000379433 BICC1Q9H694 974 aaKnown RBP13.19□□□□□ -0.3
NEDD9-201ENST00000379433 NDUFB9Q9Y6M9 179 aa13.19□□□□□ -0.3
NEDD9-201ENST00000379433 ADCY9O60503 1353 aa13.18□□□□□ -0.3
NEDD9-201ENST00000379433 RHPN1Q8TCX5 695 aa13.18□□□□□ -0.3
NEDD9-201ENST00000379433 MARF1Q9Y4F3 1742 aaKnown RBP13.18□□□□□ -0.3
NEDD9-201ENST00000379433 TNS3Q68CZ2 1445 aa13.18□□□□□ -0.3
NEDD9-201ENST00000379433 FAM177BA6PVY3 158 aa13.18□□□□□ -0.3
NEDD9-201ENST00000379433 RRP9O43818 475 aaKnown RBP13.18□□□□□ -0.3
NEDD9-201ENST00000379433 GRIPAP1Q4V328 841 aa13.18□□□□□ -0.3
NEDD9-201ENST00000379433 SUCLG2Q96I99 432 aa13.18□□□□□ -0.3
NEDD9-201ENST00000379433 DCAF5Q96JK2 942 aa13.18□□□□□ -0.3
NEDD9-201ENST00000379433 FOXD4L6Q3SYB3 417 aaPredicted RBP13.18□□□□□ -0.3
NEDD9-201ENST00000379433 FOXD4L3Q6VB84 417 aaPredicted RBP13.18□□□□□ -0.3
NEDD9-201ENST00000379433 ANAPC15P60006 121 aa13.17□□□□□ -0.3
NEDD9-201ENST00000379433 ANKRD13DQ6ZTN6 518 aa13.17□□□□□ -0.3
NEDD9-201ENST00000379433 FMNL2Q96PY5 1086 aa13.17□□□□□ -0.3
NEDD9-201ENST00000379433 DDX21Q9NR30 783 aaKnown RBP eCLIP13.17□□□□□ -0.3
NEDD9-201ENST00000379433 HYPKQ9NX55 129 aa13.17□□□□□ -0.3
NEDD9-201ENST00000379433 SNRPA1P09661 255 aaKnown RBP13.17□□□□□ -0.3
NEDD9-201ENST00000379433 IL2RBP14784 551 aa13.16□□□□□ -0.3
NEDD9-201ENST00000379433 CWC27Q6UX04 472 aaKnown RBP13.16□□□□□ -0.3
NEDD9-201ENST00000379433 ZNF830Q96NB3 372 aaPredicted RBP13.16□□□□□ -0.3
NEDD9-201ENST00000379433 UPF3BQ9BZI7 483 aaKnown RBP13.16□□□□□ -0.3
NEDD9-201ENST00000379433 MED1Q15648 1581 aaPredicted RBP13.16□□□□□ -0.3
NEDD9-201ENST00000379433 GRM8O00222 908 aa13.16□□□□□ -0.3
NEDD9-201ENST00000379433 TTLL7Q6ZT98 887 aa13.16□□□□□ -0.3
NEDD9-201ENST00000379433 AACSQ86V21 672 aa13.16□□□□□ -0.3
NEDD9-201ENST00000379433 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP13.16□□□□□ -0.3
NEDD9-201ENST00000379433 STRCP1A6NGW2 1772 aa13.16□□□□□ -0.3
NEDD9-201ENST00000379433 A0A087WZG4 1122 aa13.15□□□□□ -0.3
NEDD9-201ENST00000379433 VGLL3A8MV65 326 aa13.15□□□□□ -0.3
NEDD9-201ENST00000379433 IFIT2P09913 472 aaKnown RBP13.15□□□□□ -0.3
NEDD9-201ENST00000379433 PDIA6Q15084 440 aa13.15□□□□□ -0.3
NEDD9-201ENST00000379433 ACSBG1Q96GR2 724 aa13.15□□□□□ -0.3
NEDD9-201ENST00000379433 IGKV5-2P06315 115 aa13.15□□□□□ -0.3
NEDD9-201ENST00000379433 ASAP1Q9ULH1 1129 aa13.15□□□□□ -0.3
NEDD9-201ENST00000379433 KDM6AO15550 1401 aaPredicted RBP13.15□□□□□ -0.3
NEDD9-201ENST00000379433 EPHA10Q5JZY3 1008 aa13.15□□□□□ -0.31
NEDD9-201ENST00000379433 BABAM1Q9NWV8 329 aa13.15□□□□□ -0.31
NEDD9-201ENST00000379433 G3BP1Q13283 466 aaKnown RBP eCLIP13.14□□□□□ -0.31
NEDD9-201ENST00000379433 CLASRPQ8N2M8 674 aaKnown RBP13.14□□□□□ -0.31
NEDD9-201ENST00000379433 GPATCH11Q8N954 259 aa13.14□□□□□ -0.31
NEDD9-201ENST00000379433 WDR17Q8IZU2 1322 aa13.14□□□□□ -0.31
NEDD9-201ENST00000379433 IL25Q9H293 177 aa13.14□□□□□ -0.31
NEDD9-201ENST00000379433 BOLA2Q9H3K6 86 aa13.14□□□□□ -0.31
NEDD9-201ENST00000379433 GPTP24298 496 aa13.13□□□□□ -0.31
NEDD9-201ENST00000379433 NEK4P51957 841 aa13.13□□□□□ -0.31
NEDD9-201ENST00000379433 SSH3Q8TE77 659 aa13.13□□□□□ -0.31
NEDD9-201ENST00000379433 EDC3Q96F86 508 aaKnown RBP13.13□□□□□ -0.31
NEDD9-201ENST00000379433 KIF2CQ99661 725 aa13.13□□□□□ -0.31
NEDD9-201ENST00000379433 ERC2O15083 957 aa13.13□□□□□ -0.31
NEDD9-201ENST00000379433 RBM25P49756 843 aaKnown RBP13.13□□□□□ -0.31
NEDD9-201ENST00000379433 LINS1Q8NG48 757 aa13.13□□□□□ -0.31
NEDD9-201ENST00000379433 TMOD3Q9NYL9 352 aa13.13□□□□□ -0.31
NEDD9-201ENST00000379433 KIF1BPQ96EK5 621 aa13.13□□□□□ -0.31
NEDD9-201ENST00000379433 USP26Q9BXU7 913 aa13.13□□□□□ -0.31
NEDD9-201ENST00000379433 TLR7Q9NYK1 1049 aaKnown RBP13.13□□□□□ -0.31
NEDD9-201ENST00000379433 IBTKQ9P2D0 1353 aaPredicted RBP13.12□□□□□ -0.31
NEDD9-201ENST00000379433 HOXB7P09629 217 aa13.12□□□□□ -0.31
NEDD9-201ENST00000379433 MCCP23508 829 aa13.12□□□□□ -0.31
NEDD9-201ENST00000379433 REC8O95072 547 aa13.11□□□□□ -0.31
NEDD9-201ENST00000379433 CHAMP1Q96JM3 812 aa13.11□□□□□ -0.31
NEDD9-201ENST00000379433 NEUROD6Q96NK8 337 aa13.11□□□□□ -0.31
NEDD9-201ENST00000379433 NEURL1BA8MQ27 555 aa13.11□□□□□ -0.31
NEDD9-201ENST00000379433 PALD1Q9ULE6 856 aa13.11□□□□□ -0.31
NEDD9-201ENST00000379433 NBPF26B4DH59 902 aa13.11□□□□□ -0.31
NEDD9-201ENST00000379433 KDM4AO75164 1064 aa13.11□□□□□ -0.31
NEDD9-201ENST00000379433 KCNJ4P48050 445 aa13.11□□□□□ -0.31
NEDD9-201ENST00000379433 KCNQ4P56696 695 aa13.11□□□□□ -0.31
NEDD9-201ENST00000379433 NBPF14Q5TI25 921 aa13.11□□□□□ -0.31
NEDD9-201ENST00000379433 NBPF10Q6P3W6 841 aaKnown RBP13.11□□□□□ -0.31
NEDD9-201ENST00000379433 NBPF15Q8N660 670 aa13.11□□□□□ -0.31
NEDD9-201ENST00000379433 CLGNO14967 610 aa13.1□□□□□ -0.31
NEDD9-201ENST00000379433 GCKRQ14397 625 aa13.1□□□□□ -0.31
NEDD9-201ENST00000379433 KAZALD1Q96I82 304 aa13.1□□□□□ -0.31
NEDD9-201ENST00000379433 ZNF594Q96JF6 807 aaPredicted RBP13.1□□□□□ -0.31
NEDD9-201ENST00000379433 LMTK3Q96Q04 1460 aa13.1□□□□□ -0.31
NEDD9-201ENST00000379433 HDAC5Q9UQL6 1122 aa13.1□□□□□ -0.31
NEDD9-201ENST00000379433 PCDH11XQ9BZA7 1347 aa13.1□□□□□ -0.31
NEDD9-201ENST00000379433 PCDH11YQ9BZA8 1340 aa13.1□□□□□ -0.31
NEDD9-201ENST00000379433 CPA1P15085 419 aa13.1□□□□□ -0.31
NEDD9-201ENST00000379433 DNAJC10Q8IXB1 793 aa13.1□□□□□ -0.31
NEDD9-201ENST00000379433 RGS22Q8NE09 1264 aa13.1□□□□□ -0.31
NEDD9-201ENST00000379433 PRDM4Q9UKN5 801 aa13.1□□□□□ -0.31
NEDD9-201ENST00000379433 SOS2Q07890 1332 aaPredicted RBP13.1□□□□□ -0.31
NEDD9-201ENST00000379433 CHGBP05060 677 aa13.1□□□□□ -0.31
NEDD9-201ENST00000379433 LMBR1LQ6UX01 489 aa13.1□□□□□ -0.31
NEDD9-201ENST00000379433 SYNE4Q8N205 404 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms