RNA–Protein interactions for RNA: ENST00000357890.9

RNF40-202, Transcript of ring finger protein 40, humanhuman

TSL 2 BASIC

Gene RNF40, Length 3,917 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40-202ENST00000357890 GADD45BO75293 160 aaPredicted RBP11.85□□□□□ -0.51
RNF40-202ENST00000357890 ATP8B2P98198 1209 aa11.85□□□□□ -0.51
RNF40-202ENST00000357890 CKAP2LQ8IYA6 745 aa11.85□□□□□ -0.51
RNF40-202ENST00000357890 CCDC192P0DO97 292 aa11.85□□□□□ -0.51
RNF40-202ENST00000357890 FOSBP53539 338 aa11.85□□□□□ -0.51
RNF40-202ENST00000357890 FERMT3Q86UX7 667 aa11.85□□□□□ -0.51
RNF40-202ENST00000357890 CLASRPQ8N2M8 674 aaKnown RBP11.85□□□□□ -0.51
RNF40-202ENST00000357890 SPG7Q9UQ90 795 aa11.85□□□□□ -0.51
RNF40-202ENST00000357890 PTGS1P23219 599 aa11.85□□□□□ -0.51
RNF40-202ENST00000357890 PSME1Q06323 249 aa11.85□□□□□ -0.51
RNF40-202ENST00000357890 PNMA6EA0A0J9YXQ4 647 aa11.84□□□□□ -0.51
RNF40-202ENST00000357890 TPM3P06753 285 aa11.84□□□□□ -0.51
RNF40-202ENST00000357890 CALCOCO1Q9P1Z2 691 aa11.84□□□□□ -0.51
RNF40-202ENST00000357890 TBX22Q9Y458 520 aa11.84□□□□□ -0.51
RNF40-202ENST00000357890 NCOA3Q9Y6Q9 1424 aa11.84□□□□□ -0.51
RNF40-202ENST00000357890 C1orf141Q5JVX7 400 aa11.84□□□□□ -0.51
RNF40-202ENST00000357890 CCDC186Q7Z3E2 898 aa11.84□□□□□ -0.51
RNF40-202ENST00000357890 USHBP1Q8N6Y0 703 aa11.84□□□□□ -0.51
RNF40-202ENST00000357890 CNPY2Q9Y2B0 182 aa11.84□□□□□ -0.51
RNF40-202ENST00000357890 CCDC9Q9Y3X0 531 aaKnown RBP11.84□□□□□ -0.51
RNF40-202ENST00000357890 CHMLP26374 656 aa11.84□□□□□ -0.51
RNF40-202ENST00000357890 KRT222Q8N1A0 295 aa11.84□□□□□ -0.51
RNF40-202ENST00000357890 PALD1Q9ULE6 856 aa11.84□□□□□ -0.51
RNF40-202ENST00000357890 APPP05067 770 aa11.83□□□□□ -0.52
RNF40-202ENST00000357890 CASTP20810 708 aaKnown RBP11.83□□□□□ -0.52
RNF40-202ENST00000357890 PPP1R42Q7Z4L9 355 aa11.83□□□□□ -0.52
RNF40-202ENST00000357890 TMX1Q9H3N1 280 aa11.83□□□□□ -0.52
RNF40-202ENST00000357890 OGFRQ9NZT2 677 aa11.83□□□□□ -0.52
RNF40-202ENST00000357890 RAB11FIP3O75154 756 aa11.83□□□□□ -0.52
RNF40-202ENST00000357890 AIMP1Q12904 312 aaKnown RBP11.83□□□□□ -0.52
RNF40-202ENST00000357890 ANXA1P04083 346 aa11.82□□□□□ -0.52
RNF40-202ENST00000357890 CCDC83Q8IWF9 413 aa11.82□□□□□ -0.52
RNF40-202ENST00000357890 JAKMIP1Q96N16 626 aaKnown RBP11.82□□□□□ -0.52
RNF40-202ENST00000357890 PLEKHG1Q9ULL1 1385 aa11.82□□□□□ -0.52
RNF40-202ENST00000357890 TECPR2O15040 1411 aa11.82□□□□□ -0.52
RNF40-202ENST00000357890 HSP90B1P14625 803 aaKnown RBP11.82□□□□□ -0.52
RNF40-202ENST00000357890 HOXC9P31274 260 aa11.82□□□□□ -0.52
RNF40-202ENST00000357890 CEBPZQ03701 1054 aaKnown RBP11.82□□□□□ -0.52
RNF40-202ENST00000357890 MNS1Q8NEH6 495 aa11.82□□□□□ -0.52
RNF40-202ENST00000357890 KIF1BPQ96EK5 621 aa11.82□□□□□ -0.52
RNF40-202ENST00000357890 OSBPL3Q9H4L5 887 aa11.82□□□□□ -0.52
RNF40-202ENST00000357890 SOS1Q07889 1333 aaPredicted RBP11.82□□□□□ -0.52
RNF40-202ENST00000357890 ANAPC15P60006 121 aa11.81□□□□□ -0.52
RNF40-202ENST00000357890 GTF3C6Q969F1 213 aa11.81□□□□□ -0.52
RNF40-202ENST00000357890 PYCARDQ9ULZ3 195 aa11.81□□□□□ -0.52
RNF40-202ENST00000357890 IGSF1Q8N6C5 1336 aa11.81□□□□□ -0.52
RNF40-202ENST00000357890 GPS2Q13227 327 aa11.81□□□□□ -0.52
RNF40-202ENST00000357890 PLEKHO1Q53GL0 409 aaPredicted RBP11.81□□□□□ -0.52
RNF40-202ENST00000357890 FAM177A1Q8N128 213 aaPredicted RBP11.81□□□□□ -0.52
RNF40-202ENST00000357890 PDLIM2Q96JY6 352 aa11.81□□□□□ -0.52
RNF40-202ENST00000357890 FMNL2Q96PY5 1086 aa11.81□□□□□ -0.52
RNF40-202ENST00000357890 DNAJC2Q99543 621 aaKnown RBP11.81□□□□□ -0.52
RNF40-202ENST00000357890 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.81□□□□□ -0.52
RNF40-202ENST00000357890 MAP3K5Q99683 1374 aa11.81□□□□□ -0.52
RNF40-202ENST00000357890 ATP10DQ9P241 1426 aa11.81□□□□□ -0.52
RNF40-202ENST00000357890 IRX3P78415 501 aaPredicted RBP11.8□□□□□ -0.52
RNF40-202ENST00000357890 PRPF40BQ6NWY9 871 aaKnown RBP11.8□□□□□ -0.52
RNF40-202ENST00000357890 ZNF530Q6P9A1 599 aaPredicted RBP11.8□□□□□ -0.52
RNF40-202ENST00000357890 FEZ1Q99689 392 aa11.8□□□□□ -0.52
RNF40-202ENST00000357890 NOL10Q9BSC4 688 aaKnown RBP11.8□□□□□ -0.52
RNF40-202ENST00000357890 TNMDQ9H2S6 317 aa11.8□□□□□ -0.52
RNF40-202ENST00000357890 CYP46A1Q9Y6A2 500 aa11.8□□□□□ -0.52
RNF40-202ENST00000357890 NAA30Q147X3 362 aaPredicted RBP11.8□□□□□ -0.52
RNF40-202ENST00000357890 PTPN14Q15678 1187 aa11.8□□□□□ -0.52
RNF40-202ENST00000357890 STX6O43752 255 aa11.8□□□□□ -0.52
RNF40-202ENST00000357890 CPA1P15085 419 aa11.8□□□□□ -0.52
RNF40-202ENST00000357890 G3BP1Q13283 466 aaKnown RBP eCLIP11.8□□□□□ -0.523e-7■■□□□ 13.3
RNF40-202ENST00000357890 RHPN1Q8TCX5 695 aa11.8□□□□□ -0.52
RNF40-202ENST00000357890 BABAM1Q9NWV8 329 aa11.8□□□□□ -0.52
RNF40-202ENST00000357890 PHF8Q9UPP1 1060 aa11.8□□□□□ -0.52
RNF40-202ENST00000357890 LIMCH1Q9UPQ0 1083 aa11.8□□□□□ -0.52
RNF40-202ENST00000357890 FER1L4A9Z1Z3 1794 aa11.8□□□□□ -0.52
RNF40-202ENST00000357890 KDM4AO75164 1064 aa11.8□□□□□ -0.52
RNF40-202ENST00000357890 ESCO1Q5FWF5 840 aa11.8□□□□□ -0.52
RNF40-202ENST00000357890 IPO4Q8TEX9 1081 aaKnown RBP11.8□□□□□ -0.52
RNF40-202ENST00000357890 DNAAF4Q8WXU2 420 aa11.8□□□□□ -0.52
RNF40-202ENST00000357890 SIL1Q9H173 461 aa11.8□□□□□ -0.52
RNF40-202ENST00000357890 PDRG1Q9NUG6 133 aa11.8□□□□□ -0.52
RNF40-202ENST00000357890 OVOS2A0A0J9YW53 1432 aa11.79□□□□□ -0.52
RNF40-202ENST00000357890 OVOS2Q6IE36 1432 aa11.79□□□□□ -0.52
RNF40-202ENST00000357890 PI4KAP2A4QPH2 592 aa11.79□□□□□ -0.52
RNF40-202ENST00000357890 STK3Q13188 491 aa11.79□□□□□ -0.52
RNF40-202ENST00000357890 LARP1BQ659C4 914 aaKnown RBP11.79□□□□□ -0.52
RNF40-202ENST00000357890 ZNF710Q8N1W2 664 aa11.79□□□□□ -0.52
RNF40-202ENST00000357890 PI4KAP1Q8N8J0 262 aa11.79□□□□□ -0.52
RNF40-202ENST00000357890 PHAXQ9H814 394 aaKnown RBP11.79□□□□□ -0.52
RNF40-202ENST00000357890 USP31Q70CQ4 1352 aa11.79□□□□□ -0.52
RNF40-202ENST00000357890 BTBD11A6QL63 1104 aa11.79□□□□□ -0.52
RNF40-202ENST00000357890 BRD1O95696 1058 aa11.79□□□□□ -0.52
RNF40-202ENST00000357890 UVSSAQ2YD98 709 aa11.79□□□□□ -0.52
RNF40-202ENST00000357890 UNC5CLQ8IV45 518 aa11.79□□□□□ -0.52
RNF40-202ENST00000357890 NUP62CLQ9H1M0 184 aa11.79□□□□□ -0.52
RNF40-202ENST00000357890 ZDHHC9Q9Y397 364 aa11.79□□□□□ -0.52
RNF40-202ENST00000357890 CRB1P82279 1406 aa11.79□□□□□ -0.52
RNF40-202ENST00000357890 H3BQV1 296 aa11.79□□□□□ -0.52
RNF40-202ENST00000357890 IFFO2Q5TF58 517 aa11.79□□□□□ -0.52
RNF40-202ENST00000357890 IL17REQ8NFR9 667 aa11.79□□□□□ -0.52
RNF40-202ENST00000357890 INTS4Q96HW7 963 aaKnown RBP11.79□□□□□ -0.52
RNF40-202ENST00000357890 ARGLU1Q9NWB6 273 aaPredicted RBP11.79□□□□□ -0.52
RNF40-202ENST00000357890 CEP135Q66GS9 1140 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms