RNA–Protein interactions for RNA: ENST00000354901.8

SMG6-202, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 1 (best) BASIC

Gene SMG6, Length 3,473 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-202ENST00000354901 RGPD8O14715 1765 aaPredicted RBP11.25□□□□□ -0.61
SMG6-202ENST00000354901 NPHP1O15259 732 aa11.25□□□□□ -0.61
SMG6-202ENST00000354901 ATP8B2P98198 1209 aa11.25□□□□□ -0.61
SMG6-202ENST00000354901 TAF7Q15545 349 aaPredicted RBP11.25□□□□□ -0.61
SMG6-202ENST00000354901 TAF3Q5VWG9 929 aa11.25□□□□□ -0.61
SMG6-202ENST00000354901 IL25Q9H293 177 aa11.25□□□□□ -0.61
SMG6-202ENST00000354901 LGR6Q9HBX8 967 aa11.25□□□□□ -0.61
SMG6-202ENST00000354901 KCNQ3O43525 872 aa11.24□□□□□ -0.61
SMG6-202ENST00000354901 NAA30Q147X3 362 aaPredicted RBP11.24□□□□□ -0.61
SMG6-202ENST00000354901 ZNF592Q92610 1267 aa11.24□□□□□ -0.61
SMG6-202ENST00000354901 CHMLP26374 656 aa11.24□□□□□ -0.61
SMG6-202ENST00000354901 PPP1R42Q7Z4L9 355 aa11.24□□□□□ -0.61
SMG6-202ENST00000354901 TULP1O00294 542 aaPredicted RBP11.23□□□□□ -0.61
SMG6-202ENST00000354901 SRGAP3O43295 1099 aa11.23□□□□□ -0.61
SMG6-202ENST00000354901 MCCP23508 829 aa11.23□□□□□ -0.61
SMG6-202ENST00000354901 MCM5P33992 734 aa11.23□□□□□ -0.61
SMG6-202ENST00000354901 OS9Q13438 667 aaPredicted RBP11.23□□□□□ -0.61
SMG6-202ENST00000354901 PRIMPOLQ96LW4 560 aa11.23□□□□□ -0.61
SMG6-202ENST00000354901 LRSAM1Q6UWE0 723 aa11.23□□□□□ -0.61
SMG6-202ENST00000354901 LRRC59Q96AG4 307 aaKnown RBP11.23□□□□□ -0.61
SMG6-202ENST00000354901 NOL12Q9UGY1 213 aaKnown RBP eCLIP11.23□□□□□ -0.61
SMG6-202ENST00000354901 V9GYY5 206 aaPredicted RBP11.23□□□□□ -0.61
SMG6-202ENST00000354901 NBPF7P0C2Y1 421 aaPredicted RBP11.23□□□□□ -0.61
SMG6-202ENST00000354901 KIF1AQ12756 1690 aa11.23□□□□□ -0.61
SMG6-202ENST00000354901 TIGD1Q96MW7 591 aa11.23□□□□□ -0.61
SMG6-202ENST00000354901 TSPY26PQ9H489 355 aa11.23□□□□□ -0.61
SMG6-202ENST00000354901 CWC22Q9HCG8 908 aaKnown RBP11.23□□□□□ -0.61
SMG6-202ENST00000354901 PIK3C2AO00443 1686 aa11.22□□□□□ -0.61
SMG6-202ENST00000354901 CYP2E1P05181 493 aaPredicted RBP11.22□□□□□ -0.61
SMG6-202ENST00000354901 OSBPL3Q9H4L5 887 aa11.22□□□□□ -0.61
SMG6-202ENST00000354901 CHPF2Q9P2E5 772 aa11.22□□□□□ -0.61
SMG6-202ENST00000354901 KDRP35968 1356 aa11.22□□□□□ -0.61
SMG6-202ENST00000354901 PI4KAP2A4QPH2 592 aa11.22□□□□□ -0.61
SMG6-202ENST00000354901 MPRIPQ6WCQ1 1025 aa11.22□□□□□ -0.61
SMG6-202ENST00000354901 PI4KAP1Q8N8J0 262 aa11.22□□□□□ -0.61
SMG6-202ENST00000354901 SRCIN1Q9C0H9 1055 aa11.22□□□□□ -0.61
SMG6-202ENST00000354901 MAP3K5Q99683 1374 aa11.22□□□□□ -0.61
SMG6-202ENST00000354901 CCDC66A2RUB6 948 aa11.22□□□□□ -0.61
SMG6-202ENST00000354901 NBPF6Q5VWK0 638 aa11.21□□□□□ -0.61
SMG6-202ENST00000354901 DDX54Q8TDD1 881 aaKnown RBP11.21□□□□□ -0.61
SMG6-202ENST00000354901 NBPF4Q96M43 638 aa11.21□□□□□ -0.61
SMG6-202ENST00000354901 RGPD1P0DJD0 1748 aa11.21□□□□□ -0.61
SMG6-202ENST00000354901 TEFQ10587 303 aa11.21□□□□□ -0.62
SMG6-202ENST00000354901 IBTKQ9P2D0 1353 aaPredicted RBP11.21□□□□□ -0.62
SMG6-202ENST00000354901 ADCY5O95622 1261 aa11.2□□□□□ -0.62
SMG6-202ENST00000354901 SPG7Q9UQ90 795 aa11.2□□□□□ -0.62
SMG6-202ENST00000354901 DCCP43146 1447 aa11.2□□□□□ -0.62
SMG6-202ENST00000354901 SALL3Q9BXA9 1300 aa11.2□□□□□ -0.62
SMG6-202ENST00000354901 CPA1P15085 419 aa11.2□□□□□ -0.62
SMG6-202ENST00000354901 ESCO1Q5FWF5 840 aa11.2□□□□□ -0.62
SMG6-202ENST00000354901 CWC27Q6UX04 472 aaKnown RBP11.2□□□□□ -0.62
SMG6-202ENST00000354901 CLEC17AQ6ZS10 378 aa11.2□□□□□ -0.62
SMG6-202ENST00000354901 RHPN1Q8TCX5 695 aa11.2□□□□□ -0.62
SMG6-202ENST00000354901 PIBF1Q8WXW3 757 aa11.2□□□□□ -0.62
SMG6-202ENST00000354901 DNAJC2Q99543 621 aaKnown RBP11.2□□□□□ -0.62
SMG6-202ENST00000354901 ZNF530Q6P9A1 599 aaPredicted RBP11.19□□□□□ -0.62
SMG6-202ENST00000354901 C16orf45Q96MC5 204 aaPredicted RBP11.19□□□□□ -0.62
SMG6-202ENST00000354901 MARF1Q9Y4F3 1742 aaKnown RBP11.19□□□□□ -0.62
SMG6-202ENST00000354901 SOS1Q07889 1333 aaPredicted RBP11.19□□□□□ -0.62
SMG6-202ENST00000354901 PSME1Q06323 249 aa11.19□□□□□ -0.62
SMG6-202ENST00000354901 ST7Q9NRC1 585 aa11.19□□□□□ -0.62
SMG6-202ENST00000354901 DIAPH3Q9NSV4 1193 aa11.19□□□□□ -0.62
SMG6-202ENST00000354901 PHF8Q9UPP1 1060 aa11.19□□□□□ -0.62
SMG6-202ENST00000354901 PATL2C9JE40 543 aaKnown RBP11.19□□□□□ -0.62
SMG6-202ENST00000354901 HTATSF1O43719 755 aaKnown RBP11.18□□□□□ -0.62
SMG6-202ENST00000354901 HCLS1P14317 486 aaPredicted RBP11.18□□□□□ -0.62
SMG6-202ENST00000354901 AIMP1Q12904 312 aaKnown RBP11.18□□□□□ -0.62
SMG6-202ENST00000354901 PA2G4Q9UQ80 394 aaKnown RBP11.18□□□□□ -0.62
SMG6-202ENST00000354901 PHRF1Q9P1Y6 1649 aaKnown RBP11.18□□□□□ -0.62
SMG6-202ENST00000354901 DNAAF4Q8WXU2 420 aa11.18□□□□□ -0.62
SMG6-202ENST00000354901 PRAMEF22A3QJZ6 481 aa11.18□□□□□ -0.62
SMG6-202ENST00000354901 BTBD11A6QL63 1104 aa11.18□□□□□ -0.62
SMG6-202ENST00000354901 SSH3Q8TE77 659 aa11.18□□□□□ -0.62
SMG6-202ENST00000354901 MST1RQ04912 1400 aa11.17□□□□□ -0.62
SMG6-202ENST00000354901 C9orf78Q9NZ63 289 aaPredicted RBP11.17□□□□□ -0.62
SMG6-202ENST00000354901 OGFRQ9NZT2 677 aa11.17□□□□□ -0.62
SMG6-202ENST00000354901 PYCARDQ9ULZ3 195 aa11.17□□□□□ -0.62
SMG6-202ENST00000354901 EIF4A1P60842 406 aaKnown RBP11.17□□□□□ -0.62
SMG6-202ENST00000354901 DRC7Q8IY82 874 aa11.17□□□□□ -0.62
SMG6-202ENST00000354901 GTF2F1P35269 517 aaKnown RBP eCLIP11.17□□□□□ -0.62
SMG6-202ENST00000354901 CWF19L2Q2TBE0 894 aaKnown RBP11.17□□□□□ -0.62
SMG6-202ENST00000354901 GADD45BO75293 160 aaPredicted RBP11.16□□□□□ -0.62
SMG6-202ENST00000354901 PROSER3Q2NL68 480 aa11.16□□□□□ -0.62
SMG6-202ENST00000354901 STAP2Q9UGK3 403 aa11.16□□□□□ -0.62
SMG6-202ENST00000354901 RASEFQ8IZ41 740 aa11.16□□□□□ -0.62
SMG6-202ENST00000354901 BRD1O95696 1058 aa11.15□□□□□ -0.62
SMG6-202ENST00000354901 MCM2P49736 904 aa11.15□□□□□ -0.62
SMG6-202ENST00000354901 KIF1BPQ96EK5 621 aa11.15□□□□□ -0.62
SMG6-202ENST00000354901 CHMP3Q9Y3E7 222 aa11.15□□□□□ -0.62
SMG6-202ENST00000354901 CAPN2P17655 700 aa11.15□□□□□ -0.62
SMG6-202ENST00000354901 PI4K2BQ8TCG2 481 aa11.15□□□□□ -0.62
SMG6-202ENST00000354901 TOMM22Q9NS69 142 aa11.15□□□□□ -0.62
SMG6-202ENST00000354901 BEND3Q5T5X7 828 aa11.15□□□□□ -0.63
SMG6-202ENST00000354901 CNTROBQ8N137 903 aa11.15□□□□□ -0.63
SMG6-202ENST00000354901 IP6K1Q92551 441 aa11.15□□□□□ -0.63
SMG6-202ENST00000354901 SIL1Q9H173 461 aa11.15□□□□□ -0.63
SMG6-202ENST00000354901 MAP3K2Q9Y2U5 619 aa11.15□□□□□ -0.63
SMG6-202ENST00000354901 TEX2Q8IWB9 1127 aa11.14□□□□□ -0.63
SMG6-202ENST00000354901 SLFN14P0C7P3 912 aa11.14□□□□□ -0.63
SMG6-202ENST00000354901 C1orf141Q5JVX7 400 aa11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms