RNA–Protein interactions for RNA: ENST00000354674.4

SYNE1-203, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,154 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-203ENST00000354674 ASAP1Q9ULH1 1129 aa12.49□□□□□ -0.41
SYNE1-203ENST00000354674 FAM177BA6PVY3 158 aa12.49□□□□□ -0.41
SYNE1-203ENST00000354674 ZBTB7BO15156 539 aaPredicted RBP12.49□□□□□ -0.41
SYNE1-203ENST00000354674 PRIM1P49642 420 aaKnown RBP12.49□□□□□ -0.41
SYNE1-203ENST00000354674 ITPRIPQ8IWB1 547 aa12.49□□□□□ -0.41
SYNE1-203ENST00000354674 PHAXQ9H814 394 aaKnown RBP12.49□□□□□ -0.41
SYNE1-203ENST00000354674 QTRT2Q9H974 415 aaKnown RBP12.49□□□□□ -0.41
SYNE1-203ENST00000354674 ZBTB40Q9NUA8 1239 aa12.49□□□□□ -0.41
SYNE1-203ENST00000354674 USP16Q9Y5T5 823 aa12.49□□□□□ -0.41
SYNE1-203ENST00000354674 HYPKQ9NX55 129 aa12.48□□□□□ -0.41
SYNE1-203ENST00000354674 PROSER3Q2NL68 480 aa12.48□□□□□ -0.41
SYNE1-203ENST00000354674 ZNF831Q5JPB2 1677 aa12.47□□□□□ -0.41
SYNE1-203ENST00000354674 KDM2BQ8NHM5 1336 aa12.47□□□□□ -0.41
SYNE1-203ENST00000354674 NHSQ6T4R5 1651 aa12.47□□□□□ -0.41
SYNE1-203ENST00000354674 PPP4R3BQ5MIZ7 849 aa12.47□□□□□ -0.41
SYNE1-203ENST00000354674 TJP1Q07157 1748 aa12.47□□□□□ -0.41
SYNE1-203ENST00000354674 UQCRHLA0A096LP55 91 aa12.46□□□□□ -0.41
SYNE1-203ENST00000354674 UQCRHP07919 91 aa12.46□□□□□ -0.41
SYNE1-203ENST00000354674 CCT4P50991 539 aaKnown RBP12.46□□□□□ -0.42
SYNE1-203ENST00000354674 FKBP5Q13451 457 aaPredicted RBP12.46□□□□□ -0.42
SYNE1-203ENST00000354674 GAS2L3Q86XJ1 694 aa12.46□□□□□ -0.42
SYNE1-203ENST00000354674 ADCY9O60503 1353 aa12.46□□□□□ -0.42
SYNE1-203ENST00000354674 ATP10DQ9P241 1426 aa12.45□□□□□ -0.42
SYNE1-203ENST00000354674 MRE11P49959 708 aa12.45□□□□□ -0.42
SYNE1-203ENST00000354674 ZNF772Q68DY9 489 aaPredicted RBP12.45□□□□□ -0.42
SYNE1-203ENST00000354674 TEX13AQ9BXU3 409 aaPredicted RBP12.45□□□□□ -0.42
SYNE1-203ENST00000354674 PCDHB15Q9Y5E8 787 aa12.45□□□□□ -0.42
SYNE1-203ENST00000354674 IBTKQ9P2D0 1353 aaPredicted RBP12.45□□□□□ -0.42
SYNE1-203ENST00000354674 FSD2A1L4K1 749 aa12.45□□□□□ -0.42
SYNE1-203ENST00000354674 PTCD1O75127 700 aaKnown RBP12.45□□□□□ -0.42
SYNE1-203ENST00000354674 DHX37Q8IY37 1157 aaKnown RBP12.45□□□□□ -0.42
SYNE1-203ENST00000354674 SEPT12Q8IYM1 358 aa12.45□□□□□ -0.42
SYNE1-203ENST00000354674 SLC4A9Q96Q91 983 aa12.45□□□□□ -0.42
SYNE1-203ENST00000354674 SBF2Q86WG5 1849 aa12.45□□□□□ -0.42
SYNE1-203ENST00000354674 F6X3S4 739 aa12.44□□□□□ -0.42
SYNE1-203ENST00000354674 ANXA1P04083 346 aa12.44□□□□□ -0.42
SYNE1-203ENST00000354674 MCM4P33991 863 aa12.44□□□□□ -0.42
SYNE1-203ENST00000354674 MSNP26038 577 aaKnown RBP12.44□□□□□ -0.42
SYNE1-203ENST00000354674 BECN1Q14457 450 aa12.44□□□□□ -0.42
SYNE1-203ENST00000354674 MPNDQ8N594 471 aa12.44□□□□□ -0.42
SYNE1-203ENST00000354674 FOXD4L1Q9NU39 408 aa12.44□□□□□ -0.42
SYNE1-203ENST00000354674 RREB1Q92766 1687 aa12.44□□□□□ -0.42
SYNE1-203ENST00000354674 ZBTB9Q96C00 473 aa12.44□□□□□ -0.42
SYNE1-203ENST00000354674 ACSBG1Q96GR2 724 aa12.44□□□□□ -0.42
SYNE1-203ENST00000354674 TMEM51Q9NW97 253 aa12.44□□□□□ -0.42
SYNE1-203ENST00000354674 NBPF26B4DH59 902 aa12.43□□□□□ -0.42
SYNE1-203ENST00000354674 NBPF14Q5TI25 921 aa12.43□□□□□ -0.42
SYNE1-203ENST00000354674 NBPF10Q6P3W6 841 aaKnown RBP12.43□□□□□ -0.42
SYNE1-203ENST00000354674 NBPF15Q8N660 670 aa12.43□□□□□ -0.42
SYNE1-203ENST00000354674 SYTL4Q96C24 671 aaPredicted RBP12.43□□□□□ -0.42
SYNE1-203ENST00000354674 KCNQ2O43526 872 aa12.43□□□□□ -0.42
SYNE1-203ENST00000354674 KSR2Q6VAB6 950 aa12.43□□□□□ -0.42
SYNE1-203ENST00000354674 BRWD3Q6RI45 1802 aa12.43□□□□□ -0.42
SYNE1-203ENST00000354674 CENPQQ7L2Z9 268 aaPredicted RBP12.42□□□□□ -0.42
SYNE1-203ENST00000354674 CGNQ9P2M7 1197 aaKnown RBP12.42□□□□□ -0.42
SYNE1-203ENST00000354674 PI4KAP2A4QPH2 592 aa12.42□□□□□ -0.42
SYNE1-203ENST00000354674 IGHDP01880 384 aa12.42□□□□□ -0.42
SYNE1-203ENST00000354674 BEND3Q5T5X7 828 aa12.42□□□□□ -0.42
SYNE1-203ENST00000354674 PI4KAP1Q8N8J0 262 aa12.42□□□□□ -0.42
SYNE1-203ENST00000354674 DNAAF4Q8WXU2 420 aa12.42□□□□□ -0.42
SYNE1-203ENST00000354674 BTAF1O14981 1849 aa12.42□□□□□ -0.42
SYNE1-203ENST00000354674 SMARCC1Q92922 1105 aaPredicted RBP12.42□□□□□ -0.42
SYNE1-203ENST00000354674 NUP188Q5SRE5 1749 aa12.42□□□□□ -0.42
SYNE1-203ENST00000354674 SPDYE4A6NLX3 237 aa12.41□□□□□ -0.42
SYNE1-203ENST00000354674 CDK11BP21127 795 aaKnown RBP12.41□□□□□ -0.42
SYNE1-203ENST00000354674 RBM6P78332 1123 aaKnown RBP12.41□□□□□ -0.42
SYNE1-203ENST00000354674 HDAC1Q13547 482 aaPredicted RBP12.41□□□□□ -0.42
SYNE1-203ENST00000354674 DNAJC10Q8IXB1 793 aa12.41□□□□□ -0.42
SYNE1-203ENST00000354674 A0A0G2JS52 829 aa12.41□□□□□ -0.42
SYNE1-203ENST00000354674 DDX58O95786 925 aaKnown RBP12.41□□□□□ -0.42
SYNE1-203ENST00000354674 CYP19A1P11511 503 aaPredicted RBP12.41□□□□□ -0.42
SYNE1-203ENST00000354674 SMAP1Q8IYB5 467 aaPredicted RBP12.41□□□□□ -0.42
SYNE1-203ENST00000354674 IPO4Q8TEX9 1081 aaKnown RBP12.41□□□□□ -0.42
SYNE1-203ENST00000354674 XAGE3Q8WTP9 111 aa12.41□□□□□ -0.42
SYNE1-203ENST00000354674 PALLDQ8WX93 1383 aa12.41□□□□□ -0.42
SYNE1-203ENST00000354674 COL5A3P25940 1745 aaPredicted RBP12.41□□□□□ -0.42
SYNE1-203ENST00000354674 ARFGEF2Q9Y6D5 1785 aa12.41□□□□□ -0.42
SYNE1-203ENST00000354674 A1BGP04217 495 aa12.4□□□□□ -0.42
SYNE1-203ENST00000354674 MYL6BP14649 208 aa12.4□□□□□ -0.42
SYNE1-203ENST00000354674 SLC4A10Q6U841 1118 aa12.4□□□□□ -0.42
SYNE1-203ENST00000354674 COPS6Q7L5N1 327 aa12.4□□□□□ -0.42
SYNE1-203ENST00000354674 RBM42Q9BTD8 480 aaKnown RBP12.4□□□□□ -0.42
SYNE1-203ENST00000354674 STARD3NLO95772 234 aa12.4□□□□□ -0.42
SYNE1-203ENST00000354674 MAP3K2Q9Y2U5 619 aa12.4□□□□□ -0.42
SYNE1-203ENST00000354674 TBC1D2Q9BYX2 928 aa12.4□□□□□ -0.42
SYNE1-203ENST00000354674 MEIS3Q99687 375 aa12.39□□□□□ -0.43
SYNE1-203ENST00000354674 LY75O60449 1722 aa12.39□□□□□ -0.43
SYNE1-203ENST00000354674 LOC102724428A0A0B4J2F2 783 aa12.39□□□□□ -0.43
SYNE1-203ENST00000354674 ALDH1L1O75891 902 aa12.39□□□□□ -0.43
SYNE1-203ENST00000354674 SIK1P57059 783 aa12.39□□□□□ -0.43
SYNE1-203ENST00000354674 SRCIN1Q9C0H9 1055 aa12.39□□□□□ -0.43
SYNE1-203ENST00000354674 RWDD1Q9H446 243 aaPredicted RBP12.39□□□□□ -0.43
SYNE1-203ENST00000354674 PIP4K2AP48426 406 aaPredicted RBP12.38□□□□□ -0.43
SYNE1-203ENST00000354674 DNTTIP2Q5QJE6 756 aaKnown RBP12.38□□□□□ -0.43
SYNE1-203ENST00000354674 ANKRD13DQ6ZTN6 518 aa12.38□□□□□ -0.43
SYNE1-203ENST00000354674 PTF1AQ7RTS3 328 aa12.38□□□□□ -0.43
SYNE1-203ENST00000354674 USP44Q9H0E7 712 aa12.38□□□□□ -0.43
SYNE1-203ENST00000354674 RGS17Q9UGC6 210 aaPredicted RBP12.38□□□□□ -0.43
SYNE1-203ENST00000354674 ZSCAN20P17040 1043 aaPredicted RBP12.38□□□□□ -0.43
SYNE1-203ENST00000354674 PLBD2Q8NHP8 589 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms