RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 TMEM94Q12767 1356 aa26.42■■□□□ 1.82
SHMT1-202ENST00000352886 PHKG2P15735 406 aa26.42■■□□□ 1.82
SHMT1-202ENST00000352886 NFATC2IPQ8NCF5 419 aa26.42■■□□□ 1.82
SHMT1-202ENST00000352886 SUCLG2Q96I99 432 aa26.42■■□□□ 1.82
SHMT1-202ENST00000352886 MEGF6O75095 1541 aa26.42■■□□□ 1.82
SHMT1-202ENST00000352886 ERC1Q8IUD2 1116 aa26.41■■□□□ 1.82
SHMT1-202ENST00000352886 SPG7Q9UQ90 795 aa26.41■■□□□ 1.82
SHMT1-202ENST00000352886 COL18A1P39060 1754 aa26.41■■□□□ 1.82
SHMT1-202ENST00000352886 CWC27Q6UX04 472 aaKnown RBP26.41■■□□□ 1.82
SHMT1-202ENST00000352886 KAZALD1Q96I82 304 aa26.41■■□□□ 1.82
SHMT1-202ENST00000352886 UTYO14607 1347 aa26.4■■□□□ 1.82
SHMT1-202ENST00000352886 CSB-PGBD3P0DP91 1061 aa26.4■■□□□ 1.82
SHMT1-202ENST00000352886 RIC3Q7Z5B4 369 aa26.4■■□□□ 1.82
SHMT1-202ENST00000352886 CABLES1Q8TDN4 633 aa26.4■■□□□ 1.82
SHMT1-202ENST00000352886 INTS4Q96HW7 963 aaKnown RBP26.4■■□□□ 1.82
SHMT1-202ENST00000352886 BICC1Q9H694 974 aaKnown RBP26.4■■□□□ 1.82
SHMT1-202ENST00000352886 STRCP1A6NGW2 1772 aa26.4■■□□□ 1.82
SHMT1-202ENST00000352886 MYL6BP14649 208 aa26.39■■□□□ 1.82
SHMT1-202ENST00000352886 LSG1Q9H089 658 aaKnown RBP26.39■■□□□ 1.82
SHMT1-202ENST00000352886 ECHDC1Q9NTX5 307 aa26.39■■□□□ 1.82
SHMT1-202ENST00000352886 IFIT2P09913 472 aaKnown RBP26.39■■□□□ 1.81
SHMT1-202ENST00000352886 FOXD4L5Q5VV16 416 aaPredicted RBP26.39■■□□□ 1.81
SHMT1-202ENST00000352886 FOXD4L4Q8WXT5 416 aaPredicted RBP26.39■■□□□ 1.81
SHMT1-202ENST00000352886 NCLP19338 710 aaKnown RBP26.38■■□□□ 1.81
SHMT1-202ENST00000352886 UBE2Q2Q8WVN8 375 aa26.38■■□□□ 1.81
SHMT1-202ENST00000352886 PRPF40AO75400 957 aaKnown RBP26.38■■□□□ 1.81
SHMT1-202ENST00000352886 IGKV5-2P06315 115 aa26.38■■□□□ 1.81
SHMT1-202ENST00000352886 GPATCH3Q96I76 525 aa26.38■■□□□ 1.81
SHMT1-202ENST00000352886 KIAA1211Q6ZU35 1233 aa26.37■■□□□ 1.81
SHMT1-202ENST00000352886 IFNL2Q8IZJ0 200 aa26.37■■□□□ 1.81
SHMT1-202ENST00000352886 CHAMP1Q96JM3 812 aa26.37■■□□□ 1.81
SHMT1-202ENST00000352886 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP26.37■■□□□ 1.81
SHMT1-202ENST00000352886 AACSQ86V21 672 aa26.37■■□□□ 1.81
SHMT1-202ENST00000352886 RRAGDQ9NQL2 400 aaPredicted RBP26.37■■□□□ 1.81
SHMT1-202ENST00000352886 DIAPH3Q9NSV4 1193 aa26.37■■□□□ 1.81
SHMT1-202ENST00000352886 SNX14Q9Y5W7 946 aa26.37■■□□□ 1.81
SHMT1-202ENST00000352886 CHRNA2Q15822 529 aa26.36■■□□□ 1.81
SHMT1-202ENST00000352886 CAVIN1Q6NZI2 390 aaKnown RBP26.36■■□□□ 1.81
SHMT1-202ENST00000352886 LARP1Q6PKG0 1096 aaKnown RBP26.36■■□□□ 1.81
SHMT1-202ENST00000352886 ZNF496Q96IT1 587 aaPredicted RBP26.36■■□□□ 1.81
SHMT1-202ENST00000352886 DCCP43146 1447 aa26.36■■□□□ 1.81
SHMT1-202ENST00000352886 BRD1O95696 1058 aa26.35■■□□□ 1.81
SHMT1-202ENST00000352886 XAGE3Q8WTP9 111 aa26.35■■□□□ 1.81
SHMT1-202ENST00000352886 NEXNQ0ZGT2 675 aa26.35■■□□□ 1.81
SHMT1-202ENST00000352886 SASH1O94885 1247 aa26.34■■□□□ 1.81
SHMT1-202ENST00000352886 G3BP1Q13283 466 aaKnown RBP eCLIP26.34■■□□□ 1.81
SHMT1-202ENST00000352886 COPS6Q7L5N1 327 aa26.34■■□□□ 1.81
SHMT1-202ENST00000352886 RASEFQ8IZ41 740 aa26.34■■□□□ 1.81
SHMT1-202ENST00000352886 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP26.34■■□□□ 1.81
SHMT1-202ENST00000352886 ABCC6O95255 1503 aa26.33■■□□□ 1.81
SHMT1-202ENST00000352886 NEURL1BA8MQ27 555 aa26.33■■□□□ 1.81
SHMT1-202ENST00000352886 RUFY2Q8WXA3 655 aa26.33■■□□□ 1.81
SHMT1-202ENST00000352886 TNS3Q68CZ2 1445 aa26.33■■□□□ 1.81
SHMT1-202ENST00000352886 CYP27B1O15528 508 aa26.32■■□□□ 1.8
SHMT1-202ENST00000352886 GPT2Q8TD30 523 aa26.32■■□□□ 1.8
SHMT1-202ENST00000352886 MYD88Q99836 296 aa26.32■■□□□ 1.8
SHMT1-202ENST00000352886 ZSCAN23Q3MJ62 389 aa26.31■■□□□ 1.8
SHMT1-202ENST00000352886 TTC5Q8N0Z6 440 aa26.31■■□□□ 1.8
SHMT1-202ENST00000352886 DCAF5Q96JK2 942 aa26.31■■□□□ 1.8
SHMT1-202ENST00000352886 MRC1P22897 1456 aa26.31■■□□□ 1.8
SHMT1-202ENST00000352886 ZNF445P59923 1031 aa26.31■■□□□ 1.8
SHMT1-202ENST00000352886 EAF2Q96CJ1 260 aaPredicted RBP26.31■■□□□ 1.8
SHMT1-202ENST00000352886 EVI5LQ96CN4 794 aa26.31■■□□□ 1.8
SHMT1-202ENST00000352886 METTL22Q9BUU2 404 aaPredicted RBP26.31■■□□□ 1.8
SHMT1-202ENST00000352886 SIL1Q9H173 461 aa26.31■■□□□ 1.8
SHMT1-202ENST00000352886 USP16Q9Y5T5 823 aa26.31■■□□□ 1.8
SHMT1-202ENST00000352886 GCKRQ14397 625 aa26.3■■□□□ 1.8
SHMT1-202ENST00000352886 CADPS2Q86UW7 1296 aa26.3■■□□□ 1.8
SHMT1-202ENST00000352886 TTC14Q96N46 770 aa26.3■■□□□ 1.8
SHMT1-202ENST00000352886 SNRPA1P09661 255 aaKnown RBP26.3■■□□□ 1.8
SHMT1-202ENST00000352886 PKD1L3Q7Z443 1732 aa26.3■■□□□ 1.8
SHMT1-202ENST00000352886 PIP4K2AP48426 406 aaPredicted RBP26.29■■□□□ 1.8
SHMT1-202ENST00000352886 CCDC8Q9H0W5 538 aaPredicted RBP26.29■■□□□ 1.8
SHMT1-202ENST00000352886 PTH1RQ03431 593 aa26.28■■□□□ 1.8
SHMT1-202ENST00000352886 ANKRD13DQ6ZTN6 518 aa26.28■■□□□ 1.8
SHMT1-202ENST00000352886 KLHDC4Q8TBB5 520 aa26.28■■□□□ 1.8
SHMT1-202ENST00000352886 AK2P54819 239 aa26.28■■□□□ 1.8
SHMT1-202ENST00000352886 LRP10Q7Z4F1 713 aa26.28■■□□□ 1.8
SHMT1-202ENST00000352886 NASPP49321 788 aaPredicted RBP26.27■■□□□ 1.8
SHMT1-202ENST00000352886 TLR7Q9NYK1 1049 aaKnown RBP26.27■■□□□ 1.8
SHMT1-202ENST00000352886 EPHA10Q5JZY3 1008 aa26.27■■□□□ 1.8
SHMT1-202ENST00000352886 FMNL2Q96PY5 1086 aa26.27■■□□□ 1.8
SHMT1-202ENST00000352886 RBM27Q9P2N5 1060 aaKnown RBP26.27■■□□□ 1.8
SHMT1-202ENST00000352886 AFDNP55196 1824 aaKnown RBP26.27■■□□□ 1.8
SHMT1-202ENST00000352886 SPATA31A3Q5VYP0 1347 aa26.26■■□□□ 1.79
SHMT1-202ENST00000352886 PLEKHG2Q9H7P9 1386 aa26.26■■□□□ 1.79
SHMT1-202ENST00000352886 CASTP20810 708 aaKnown RBP26.26■■□□□ 1.79
SHMT1-202ENST00000352886 CPA1P15085 419 aa26.24■■□□□ 1.79
SHMT1-202ENST00000352886 CABP4P57796 275 aa26.24■■□□□ 1.79
SHMT1-202ENST00000352886 PRPF40BQ6NWY9 871 aaKnown RBP26.24■■□□□ 1.79
SHMT1-202ENST00000352886 RUFY3Q7L099 469 aa26.24■■□□□ 1.79
SHMT1-202ENST00000352886 LARP6Q9BRS8 491 aaKnown RBP26.24■■□□□ 1.79
SHMT1-202ENST00000352886 NSFL1CQ9UNZ2 370 aaKnown RBP26.24■■□□□ 1.79
SHMT1-202ENST00000352886 LIMCH1Q9UPQ0 1083 aa26.24■■□□□ 1.79
SHMT1-202ENST00000352886 ARFGEF2Q9Y6D5 1785 aa26.23■■□□□ 1.79
SHMT1-202ENST00000352886 JARID2Q92833 1246 aaPredicted RBP26.23■■□□□ 1.79
SHMT1-202ENST00000352886 WDR33Q9C0J8 1336 aaKnown RBP26.23■■□□□ 1.79
SHMT1-202ENST00000352886 FAM227BQ96M60 508 aa26.23■■□□□ 1.79
SHMT1-202ENST00000352886 BOLA2Q9H3K6 86 aa26.23■■□□□ 1.79
SHMT1-202ENST00000352886 TMEM63CQ9P1W3 806 aa26.23■■□□□ 1.79
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms