RNA–Protein interactions for RNA: ENST00000345865.6

UPF3B-202, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3B, Length 2,335 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-202ENST00000345865 LMBRD1Q9NUN5 540 aa18.78■□□□□ 0.6
UPF3B-202ENST00000345865 CYP27B1O15528 508 aa18.77■□□□□ 0.6
UPF3B-202ENST00000345865 CNTROBQ8N137 903 aa18.77■□□□□ 0.6
UPF3B-202ENST00000345865 KLHL40Q2TBA0 621 aa18.77■□□□□ 0.59
UPF3B-202ENST00000345865 CLASRPQ8N2M8 674 aaKnown RBP18.77■□□□□ 0.59
UPF3B-202ENST00000345865 LSG1Q9H089 658 aaKnown RBP18.77■□□□□ 0.59
UPF3B-202ENST00000345865 SPG7Q9UQ90 795 aa18.77■□□□□ 0.59
UPF3B-202ENST00000345865 DDX49Q9Y6V7 483 aaKnown RBP18.77■□□□□ 0.59
UPF3B-202ENST00000345865 TTC41PQ6P2S7 1318 aa18.76■□□□□ 0.59
UPF3B-202ENST00000345865 DDX58O95786 925 aaKnown RBP18.76■□□□□ 0.59
UPF3B-202ENST00000345865 MCM2P49736 904 aa18.76■□□□□ 0.59
UPF3B-202ENST00000345865 CWC27Q6UX04 472 aaKnown RBP18.76■□□□□ 0.59
UPF3B-202ENST00000345865 RAD50Q92878 1312 aa18.76■□□□□ 0.59
UPF3B-202ENST00000345865 EPB41L2O43491 1005 aaKnown RBP18.75■□□□□ 0.59
UPF3B-202ENST00000345865 GLRX3O76003 335 aaKnown RBP18.75■□□□□ 0.59
UPF3B-202ENST00000345865 SASH1O94885 1247 aa18.75■□□□□ 0.59
UPF3B-202ENST00000345865 CSB-PGBD3P0DP91 1061 aa18.75■□□□□ 0.59
UPF3B-202ENST00000345865 LRP10Q7Z4F1 713 aa18.75■□□□□ 0.59
UPF3B-202ENST00000345865 IFNL2Q8IZJ0 200 aa18.75■□□□□ 0.59
UPF3B-202ENST00000345865 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP18.75■□□□□ 0.59
UPF3B-202ENST00000345865 USP16Q9Y5T5 823 aa18.75■□□□□ 0.59
UPF3B-202ENST00000345865 DCCP43146 1447 aa18.75■□□□□ 0.59
UPF3B-202ENST00000345865 PIP4K2AP48426 406 aaPredicted RBP18.75■□□□□ 0.59
UPF3B-202ENST00000345865 RIC3Q7Z5B4 369 aa18.75■□□□□ 0.59
UPF3B-202ENST00000345865 XAGE3Q8WTP9 111 aa18.75■□□□□ 0.59
UPF3B-202ENST00000345865 COPS6Q7L5N1 327 aa18.74■□□□□ 0.59
UPF3B-202ENST00000345865 RASEFQ8IZ41 740 aa18.74■□□□□ 0.59
UPF3B-202ENST00000345865 ISY1Q9ULR0 285 aaKnown RBP18.74■□□□□ 0.59
UPF3B-202ENST00000345865 FOXD4L5Q5VV16 416 aaPredicted RBP18.74■□□□□ 0.59
UPF3B-202ENST00000345865 TNS3Q68CZ2 1445 aa18.74■□□□□ 0.59
UPF3B-202ENST00000345865 FAM43AQ8N2R8 423 aa18.74■□□□□ 0.59
UPF3B-202ENST00000345865 FOXD4L4Q8WXT5 416 aaPredicted RBP18.74■□□□□ 0.59
UPF3B-202ENST00000345865 ECHDC1Q9NTX5 307 aa18.74■□□□□ 0.59
UPF3B-202ENST00000345865 SNX14Q9Y5W7 946 aa18.74■□□□□ 0.59
UPF3B-202ENST00000345865 NEURL1BA8MQ27 555 aa18.73■□□□□ 0.59
UPF3B-202ENST00000345865 EPHA10Q5JZY3 1008 aa18.73■□□□□ 0.59
UPF3B-202ENST00000345865 AACSQ86V21 672 aa18.73■□□□□ 0.59
UPF3B-202ENST00000345865 KLHDC4Q8TBB5 520 aa18.73■□□□□ 0.59
UPF3B-202ENST00000345865 EAF2Q96CJ1 260 aaPredicted RBP18.73■□□□□ 0.59
UPF3B-202ENST00000345865 SPATA31A3Q5VYP0 1347 aa18.72■□□□□ 0.59
UPF3B-202ENST00000345865 LARP1Q6PKG0 1096 aaKnown RBP18.72■□□□□ 0.59
UPF3B-202ENST00000345865 ERC1Q8IUD2 1116 aa18.72■□□□□ 0.59
UPF3B-202ENST00000345865 IFIT2P09913 472 aaKnown RBP18.72■□□□□ 0.59
UPF3B-202ENST00000345865 CADPS2Q86UW7 1296 aa18.72■□□□□ 0.59
UPF3B-202ENST00000345865 INTS4Q96HW7 963 aaKnown RBP18.72■□□□□ 0.59
UPF3B-202ENST00000345865 DCAF5Q96JK2 942 aa18.72■□□□□ 0.59
UPF3B-202ENST00000345865 MRC1P22897 1456 aa18.71■□□□□ 0.59
UPF3B-202ENST00000345865 PRPF40AO75400 957 aaKnown RBP18.71■□□□□ 0.59
UPF3B-202ENST00000345865 GCKRQ14397 625 aa18.71■□□□□ 0.59
UPF3B-202ENST00000345865 MYD88Q99836 296 aa18.71■□□□□ 0.59
UPF3B-202ENST00000345865 RRAGDQ9NQL2 400 aaPredicted RBP18.71■□□□□ 0.59
UPF3B-202ENST00000345865 HDAC5Q9UQL6 1122 aa18.71■□□□□ 0.59
UPF3B-202ENST00000345865 ABCC6O95255 1503 aa18.71■□□□□ 0.59
UPF3B-202ENST00000345865 PKD1L3Q7Z443 1732 aa18.71■□□□□ 0.59
UPF3B-202ENST00000345865 BRD1O95696 1058 aa18.71■□□□□ 0.58
UPF3B-202ENST00000345865 JARID2Q92833 1246 aaPredicted RBP18.71■□□□□ 0.58
UPF3B-202ENST00000345865 METTL22Q9BUU2 404 aaPredicted RBP18.71■□□□□ 0.58
UPF3B-202ENST00000345865 SIL1Q9H173 461 aa18.71■□□□□ 0.58
UPF3B-202ENST00000345865 TLR7Q9NYK1 1049 aaKnown RBP18.71■□□□□ 0.58
UPF3B-202ENST00000345865 HSPA2P54652 639 aa18.7■□□□□ 0.58
UPF3B-202ENST00000345865 PTH1RQ03431 593 aa18.7■□□□□ 0.58
UPF3B-202ENST00000345865 GPT2Q8TD30 523 aa18.7■□□□□ 0.58
UPF3B-202ENST00000345865 TTC14Q96N46 770 aa18.7■□□□□ 0.58
UPF3B-202ENST00000345865 CCDC8Q9H0W5 538 aaPredicted RBP18.7■□□□□ 0.58
UPF3B-202ENST00000345865 SNRPA1P09661 255 aaKnown RBP18.69■□□□□ 0.58
UPF3B-202ENST00000345865 G3BP1Q13283 466 aaKnown RBP eCLIP18.69■□□□□ 0.58
UPF3B-202ENST00000345865 CAVIN1Q6NZI2 390 aaKnown RBP18.69■□□□□ 0.58
UPF3B-202ENST00000345865 ANKRD13DQ6ZTN6 518 aa18.69■□□□□ 0.58
UPF3B-202ENST00000345865 NEXNQ0ZGT2 675 aa18.68■□□□□ 0.58
UPF3B-202ENST00000345865 DIAPH3Q9NSV4 1193 aa18.68■□□□□ 0.58
UPF3B-202ENST00000345865 GLI3P10071 1580 aa18.68■□□□□ 0.58
UPF3B-202ENST00000345865 CPA1P15085 419 aa18.68■□□□□ 0.58
UPF3B-202ENST00000345865 TTC5Q8N0Z6 440 aa18.68■□□□□ 0.58
UPF3B-202ENST00000345865 LARP6Q9BRS8 491 aaKnown RBP18.68■□□□□ 0.58
UPF3B-202ENST00000345865 NCLP19338 710 aaKnown RBP18.67■□□□□ 0.58
UPF3B-202ENST00000345865 KIAA1211Q6ZU35 1233 aa18.67■□□□□ 0.58
UPF3B-202ENST00000345865 NSFL1CQ9UNZ2 370 aaKnown RBP18.67■□□□□ 0.58
UPF3B-202ENST00000345865 CPDO75976 1380 aa18.67■□□□□ 0.58
UPF3B-202ENST00000345865 XIRP1Q702N8 1843 aaKnown RBP18.67■□□□□ 0.58
UPF3B-202ENST00000345865 EVI5LQ96CN4 794 aa18.67■□□□□ 0.58
UPF3B-202ENST00000345865 GPATCH3Q96I76 525 aa18.67■□□□□ 0.58
UPF3B-202ENST00000345865 FMNL2Q96PY5 1086 aa18.67■□□□□ 0.58
UPF3B-202ENST00000345865 AK2P54819 239 aa18.66■□□□□ 0.58
UPF3B-202ENST00000345865 CABP4P57796 275 aa18.66■□□□□ 0.58
UPF3B-202ENST00000345865 ZSCAN23Q3MJ62 389 aa18.66■□□□□ 0.58
UPF3B-202ENST00000345865 RUFY3Q7L099 469 aa18.66■□□□□ 0.58
UPF3B-202ENST00000345865 RBM27Q9P2N5 1060 aaKnown RBP18.66■□□□□ 0.58
UPF3B-202ENST00000345865 ADCK5Q3MIX3 580 aa18.65■□□□□ 0.58
UPF3B-202ENST00000345865 BRINP3Q76B58 766 aa18.65■□□□□ 0.58
UPF3B-202ENST00000345865 FAM227BQ96M60 508 aa18.65■□□□□ 0.58
UPF3B-202ENST00000345865 ZNF445P59923 1031 aa18.65■□□□□ 0.58
UPF3B-202ENST00000345865 RUFY2Q8WXA3 655 aa18.65■□□□□ 0.58
UPF3B-202ENST00000345865 AFDNP55196 1824 aaKnown RBP18.64■□□□□ 0.57
UPF3B-202ENST00000345865 ARFGEF2Q9Y6D5 1785 aa18.64■□□□□ 0.57
UPF3B-202ENST00000345865 ATP5J2-PTCD1G3V325 749 aa18.64■□□□□ 0.57
UPF3B-202ENST00000345865 PTCD1O75127 700 aaKnown RBP18.64■□□□□ 0.57
UPF3B-202ENST00000345865 RFX5P48382 616 aaPredicted RBP18.64■□□□□ 0.57
UPF3B-202ENST00000345865 BOLA2Q9H3K6 86 aa18.64■□□□□ 0.57
UPF3B-202ENST00000345865 PLEKHG2Q9H7P9 1386 aa18.64■□□□□ 0.57
UPF3B-202ENST00000345865 CASTP20810 708 aaKnown RBP18.63■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms